- a1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- a2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- AboveLeftFragmentExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- AboveLeftFragmentExtractor(String, String) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveLeftFragmentExtractor
-
- AboveRightFragmentExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- AboveRightFragmentExtractor(String, String) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveRightFragmentExtractor
-
- AbstractBagOfWordsExporter - Class in org.apache.ctakes.ytex.kernel
-
- AbstractBagOfWordsExporter() - Constructor for class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- AbstractBaseDictionary - Class in org.apache.ctakes.dictionary.lookup
-
- AbstractBaseDictionary() - Constructor for class org.apache.ctakes.dictionary.lookup.AbstractBaseDictionary
-
- AbstractBaseMetaDataHit - Class in org.apache.ctakes.dictionary.lookup
-
Base impl for a MetaDataHit implementation.
- AbstractBaseMetaDataHit() - Constructor for class org.apache.ctakes.dictionary.lookup.AbstractBaseMetaDataHit
-
- AbstractClassifier - Class in org.apache.ctakes.coreference.util
-
- AbstractClassifier(File, int) - Constructor for class org.apache.ctakes.coreference.util.AbstractClassifier
-
- AbstractConceptFactory - Class in org.apache.ctakes.dictionary.lookup2.concept
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/4/2014
- AbstractConceptFactory(String) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.AbstractConceptFactory
-
- AbstractItemCell - Class in org.apache.ctakes.core.cc.pretty.cell
-
Contains the text span
- AbstractItemCell(TextSpan) - Constructor for class org.apache.ctakes.core.cc.pretty.cell.AbstractItemCell
-
- AbstractJCasTermAnnotator - Class in org.apache.ctakes.dictionary.lookup2.ae
-
Performs the basic initialization with uima context, including the parse of the dictionary specifications file.
- AbstractJCasTermAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
- AbstractJdbcWriter - Class in org.apache.ctakes.core.cc
-
Write cas to a database using jdbc
- AbstractJdbcWriter() - Constructor for class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
- AbstractJdbcWriter.FieldInfo - Interface in org.apache.ctakes.core.cc
-
- AbstractJdbcWriter.TableInfo - Interface in org.apache.ctakes.core.cc
-
- AbstractJdbcWriter.TableSqlInfo - Class in org.apache.ctakes.core.cc
-
- AbstractOutputFileWriter - Class in org.apache.ctakes.core.cc
-
- AbstractOutputFileWriter() - Constructor for class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
- AbstractRareWordDictionary - Class in org.apache.ctakes.dictionary.lookup2.dictionary
-
Author: SPF
Affiliation: CHIP-NLP
Date: 11/25/13
- AbstractRareWordDictionary(String) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.AbstractRareWordDictionary
-
- AbstractTermConsumer - Class in org.apache.ctakes.dictionary.lookup2.consumer
-
Author: SPF
Affiliation: CHIP-NLP
Date: 2/5/14
- AbstractTermConsumer(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.AbstractTermConsumer
-
- accept(File) - Method in class org.apache.ctakes.ytex.kernel.FileUtil.DirectoryFileFilter
-
- accept(File) - Method in class org.apache.ctakes.ytex.kernel.FileUtil.PrefixFileFilter
-
- accept(File) - Method in class org.apache.ctakes.ytex.kernel.FileUtil.SuffixFileFilter
-
- ACRONYM_PATTERN - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
vng change split sentences periods that do not have this acronym
preceding it
- actionPerformed(ActionEvent) - Method in class org.apache.ctakes.gui.component.FileTableCellEditor
- actionPerformed(ActionEvent) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
- add(Collection<? extends ANNOTATION_TYPE>, Collection<? extends ANNOTATION_TYPE>) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Update the statistics, comparing the reference annotations to the predicted annotations.
- add(Collection<? extends ANNOTATION_TYPE>, Collection<? extends ANNOTATION_TYPE>, Function<ANNOTATION_TYPE, SPAN_TYPE>, Function<ANNOTATION_TYPE, OUTCOME_TYPE>) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Update the statistics, comparing the reference annotations to the predicted annotations.
- add(Class<? extends AnalysisComponent>, Object...) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Use of this method is order-specific.
- add(double) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
- add(TlinkType) - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- add(String) - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- add(K) - Method in class org.apache.ctakes.utils.struct.CounterMap
-
- add(K, Integer) - Method in class org.apache.ctakes.utils.struct.CounterMap
-
- add(K) - Method in class org.apache.ctakes.utils.struct.CounterTreeMap
-
- add(K, Integer) - Method in class org.apache.ctakes.utils.struct.CounterTreeMap
-
- addAll(Iterable<AnnotationStatisticsCompact<OUTCOME_TYPE>>) - Static method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Add all statistics together.
- addAll(AnnotationStatisticsCompact<OUTCOME_TYPE>) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Adds all the statistics collected by another AnnotationStatisticsCompact to this one.
- addAllValues(K, C) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
adds everything from the given collection to the internal collection mapped with key
- addAllValues(K, C) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
adds everything from the given collection to the internal collection mapped with key
- addAllValues(K, C) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
adds everything from the given collection to the internal collection mapped with key
- addAllValues(K, C) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
adds everything from the given collection to the internal collection mapped with key
- addAllValues(K, C) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
adds everything from the given collection to the internal collection mapped with key
- addAllValues(K, C) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
adds everything from the given collection to the internal collection mapped with key
- addAnnotation(Annotation) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Adds a single annotation to the syntactic cue annotation list.
- addAnnotation(int, XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Inserts a new annotation with the specified internal id
to this XcasFile.
- addAnnotation(int, XcasAnnotation, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Inserts a new annotation, along with its position in the file,
to this XcasFile object.
- addAnnotation(int, XcasAnnotation, int, int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Inserts a new annotation, along with its position in the file,
to this XcasFile object.
- addAnnotations(List) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Adds a list of annotations to the syntactic cue annotation list.
- addCacheEntry(String) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Adds an entry to the dictionary lookup cache.
- addChild(SimpleTree) - Method in class org.apache.ctakes.utils.tree.SimpleTree
-
- addChildrenToNodes(Map<NodeKey, Node>, QueryMappingInfo) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.AddClosure
-
- AddClosure() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddClosure
-
- addCode(String, String) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- addCollectionFilter(CollectionFilter) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Adds a Collection filter to the engine.
- addConcept(ApiConcept) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- addConcept(String) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddContain2Overlap
-
- AddContain2Overlap() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddContain2Overlap
-
- addDescription(AnalysisEngineDescription) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Use of this method is order-specific.
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddEEPotentialRelations
-
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddEEPotentialRelations
-
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddEEPotentialRelations
-
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddEEPotentialRelations
-
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.AddEEPotentialRelations
-
- AddEEPotentialRelations() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.AddEEPotentialRelations
-
- addField(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
-
- addFilenameToDir(String, String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddFlippedOverlap
-
- AddFlippedOverlap() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddFlippedOverlap
-
- addHotKey(String, KeyStroke, Action) - Method in class org.apache.ctakes.gui.action.GlobalHotKeyManager
- addHotKey(String, KeyStroke, Action) - Method in interface org.apache.ctakes.gui.action.HotKeyManager
-
- addInstance(Instance<String>) - Method in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- addItemCell(ItemCell) - Method in class org.apache.ctakes.core.cc.pretty.row.DefaultItemRow
-
Attempt to add an item cell to this row
- addItemCell(ItemCell) - Method in interface org.apache.ctakes.core.cc.pretty.row.ItemRow
-
Attempt to add an item cell to this row
- addLast(Class<? extends AnalysisComponent>, Object...) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds an ae or cc component t othe very end of the pipeline.
- addListDataListener(ListDataListener) - Method in class org.apache.ctakes.gui.pipeline.bit.info.TypeProductListModel
-
does nothing.
- addLogged(Class<? extends AnalysisComponent>, Object...) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds an ae or cc wrapped with "Starting processing" and "Finished processing" log messages
Use of this method is order-specific.
- addMetaData(Object, Object) - Method in class org.apache.ctakes.necontexts.ContextHit
-
- addMetaData(Object, Object) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Adds a meta data entry for the document.
- addNominalWordToInstance(BagOfWordsData, int, String, String) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- addNominalWordToInstance(SparseData, long, String, String) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- addNumericAttribute(BufferedWriter, String) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
- addNumericWordToInstance(BagOfWordsData, int, String, double) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- addNumericWordToInstance(SparseData, long, String, double) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- addOtherTimes(JCas, TopTreebankNode, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.temporal.ae.feature.TemporalPETFlatExtractor
-
- addOtherTimes(JCas, TopTreebankNode, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPETExtractor
-
- addParameters(Object...) - Method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
Add key value pairs to the stored properties
- addPostLookupFilter(PostLookupFilter) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Adds a Post-lookup filter to the engine.
- AddPotentialRelations() - Constructor for class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.AddPotentialRelations
-
- AddPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddPotentialRelations
-
- AddPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddPotentialRelations
-
- AddPotentialRelations() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddPotentialRelations
-
- AddPotentialRelations() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddPotentialRelations
-
- addPreLookupFilter(PreLookupFilter) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Adds a Pre-lookup filter to the engine.
- addRow(StringTableRow) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTable
-
- addSectionType(RegexSectionizer.SectionType) - Static method in class org.apache.ctakes.core.ae.RegexSectionizer
-
- addSegment(SegmentMetaData) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Adds a segment.
- addStringAttribute(String, String) - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Adds an attribute that may be used for filtering.
- addStringAttribute(String, String) - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Adds an attribute that may be used for filtering.
- addStringAttribute(String, String) - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- addStringAttribute(String, String) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- addTableModelListener(TableModelListener) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- addTableModelListener(TableModelListener) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- addTableModelListener(TableModelListener) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- addTexts(Collection<String>) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- addToIndexes(JCas, ArrayList<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddTransitiveContainsRelations
-
- AddTransitiveContainsRelations() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddTransitiveContainsRelations
-
- addTransparency(Color, int) - Static method in class org.apache.ctakes.gui.util.ColorFactory
-
- addTui(Tui) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- addUserBit(UserBit) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
-
- addVectors(List<Double>, List<Double>) - Method in class org.apache.ctakes.relationextractor.ae.features.EmbeddingFeatureExtractor
-
Add two vectors.
- addVectors(List<Double>, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationEmbeddingFeatureExtractor
-
Add two vectors.
- addVectors(List<Double>, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticEmbeddingFeatureExtractor
-
Add two vectors.
- addVectors(List<Double>, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticETEmbeddingFeatureExtractor
-
Add two vectors.
- addVocabulary(String, String) - Method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- ADJP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ADJP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ADJP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ADJP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ADJP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADJP
-
Never called.
- ADJP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADJP
-
Internal - constructor used by generator
- ADJP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADJP
-
- ADJP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADJP
-
- ADJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ADJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ADJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ADJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adjective phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ADJP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADJP_Type
-
initialize variables to correspond with Cas Type and Features
- adjustOffsetToBestMatch(int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- ADVP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ADVP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ADVP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ADVP - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ADVP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADVP
-
Never called.
- ADVP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADVP
-
Internal - constructor used by generator
- ADVP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADVP
-
- ADVP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADVP
-
- ADVP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ADVP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ADVP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ADVP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An adverb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ADVP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ADVP_Type
-
initialize variables to correspond with Cas Type and Features
- AEROSOL - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- AF - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- Affects - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects() - Constructor for class org.apache.ctakes.typesystem.type.relation.Affects
-
Never called.
- Affects(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Affects
-
Internal - constructor used by generator
- Affects(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Affects
-
- Affects_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- Affects_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Affects_Type
-
initialize variables to correspond with Cas Type and Features
- AffectsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- AffectsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- AffectsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- AffectsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:50 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- AffectsTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
Never called.
- AffectsTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
Internal - constructor used by generator
- AffectsTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
- AffectsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- AffectsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- AffectsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- AffectsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- AffectsTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
precompute the scaling factor - we will always divide by this
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
load the map of uima annotation class name to mapper class name from the
database.
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- afterPropertiesSet() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- al - Variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- alias(IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.UMLSFeatureExtractor
-
- ALL_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
The ALL_SCOPE scope provides the context annotation that are found in all three of the other scopes (LEFT, MIDDLE, and RIGHT).
- allAnnotationTypes - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- allBagsParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- allFieldsValues() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Returns a string representation of all the attributes and references.
- ALLFILELOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- allParams - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- allParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- allParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- allParams - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- alog(double) - Static method in class org.apache.ctakes.utils.wiki.ApproximateMath
-
- AlternateCuePhraseAnnotator - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- AlternateCuePhraseAnnotator() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.AlternateCuePhraseAnnotator
-
- ANAFORA_ANNOTATIONS_DIR - Static variable in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- anaforaDirectory - Variable in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- anaforaOutput - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- anaforaXMLSuffixes - Variable in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- AnalyseRelationArgumentDuration() - Constructor for class org.apache.ctakes.temporal.duration.EventEventDurationStatistics.AnalyseRelationArgumentDuration
-
- AnalyseRelationArgumentDuration() - Constructor for class org.apache.ctakes.temporal.duration.EventTimeDurationStatistics.AnalyseRelationArgumentDuration
-
- analyzeContext(List<? extends Annotation>, int) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer
-
This method is called by the ContextAnnotator.
- analyzeContext(List<? extends Annotation>, int) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
-
- analyzeContext(List<? extends Annotation>, int) - Method in class org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
-
This method analyzes a list of tokens looking for a negation pattern as
specified by the class NegationFSM.
- analyzeContext(List<? extends Annotation>, int) - Method in class org.apache.ctakes.necontexts.status.StatusContextAnalyzer
-
Analyze a list of tokens looking for a status pattern as
specified by the class StatusIndicatorFSM.
- analyzeContext(List<? extends Annotation>, int) - Method in class org.apache.ctakes.smokingstatus.context.negation.NegationContextAnalyzer
-
This method analyzes a list of tokens looking for a negation pattern as
specified by the class NegationFSM.
- AnaphoricityAttributeCalculator - Class in org.apache.ctakes.coreference.util
-
- AnaphoricityAttributeCalculator(JCas, Markable) - Constructor for class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- AnatomicalSite - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite() - Constructor for class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
Never called.
- AnatomicalSite(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
Internal - constructor used by generator
- AnatomicalSite(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
- AnatomicalSite_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A body part or area, corresponding to the UMLS semantic group of Anatomy.
- AnatomicalSite_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
initialize variables to correspond with Cas Type and Features
- AnatomicalSiteListExtractorPipeline - Class in org.apache.ctakes.relationextractor.metastasis
-
Pipeline for detecting very simple lists of anatomical sites.
- AnatomicalSiteListExtractorPipeline() - Constructor for class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline
-
- AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe - Class in org.apache.ctakes.relationextractor.metastasis
-
Implements a finate state machine for detecting
extremely simple lists and conjunctions of anatomical sites.
- AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe.State - Enum in org.apache.ctakes.relationextractor.metastasis
-
- AnatomicalSiteMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
Never called.
- AnatomicalSiteMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
Internal - constructor used by generator
- AnatomicalSiteMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
- AnatomicalSiteMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
- AnatomicalSiteMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (AnatomicalSite) Entity.
- AnatomicalSiteMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
initialize variables to correspond with Cas Type and Features
- AND_RELATION - Static variable in class org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl
-
- AnnoFSAttribute() - Constructor for class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- AnnoFSAttribute(int, FeatureStructure, Integer) - Constructor for class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- AnnoLink(int, int, String) - Constructor for class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- AnnoMappingInfo - Class in org.apache.ctakes.ytex.uima.mapper
-
- AnnoMappingInfo() - Constructor for class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- annotateParagraph(JCas, String, int, int, int) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
split paragraphs.
- annotateRange(JCas, int, int) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
A utility method that annotates a given range.
- annotateRange(JCas, String, Segment, int) - Method in class org.apache.ctakes.core.ae.SentenceDetector
-
Detect sentences within a section of the text and add annotations to the
CAS.
- annotateRange(JCas, int, int) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
A utility method that tokenizes a range of text.
- annotateRange(JCas, int, int) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
Tokenizes a range of text, adding the tokens to the CAS
Tokenizes one sentence at a time.
- annotateRange(JCas, String, int, int) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
A utility method that annotates a given range.
- annotateRange(JCas, String, int, int) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
A utility method that annotates a given range.
- annotateRange(JCas, String, int, int) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
A utility method that annotates a given range.
- annotateRange(JCas, String, int, int, int) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
Detect sentences within a section of the text and add annotations to the
CAS.
- annotateSentence(JCas, Sentence) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
- Annotation - Class in org.apache.ctakes.assertion.stub
-
- Annotation() - Constructor for class org.apache.ctakes.assertion.stub.Annotation
-
- Annotation - Class in org.apache.ctakes.preprocessor
-
- Annotation() - Constructor for class org.apache.ctakes.preprocessor.Annotation
-
- AnnotationComparator() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.AnnotationComparator
-
- AnnotationContainmentLink - Class in org.apache.ctakes.ytex.uima.model
-
represent a containment relationship between annotations, e.g.
- AnnotationContainmentLink() - Constructor for class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- AnnotationCounter - Class in org.apache.ctakes.coreference.util
-
- AnnotationCounter() - Constructor for class org.apache.ctakes.coreference.util.AnnotationCounter
-
- AnnotationDepUtils - Class in org.apache.ctakes.dependency.parser.util
-
- AnnotationDepUtils() - Constructor for class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- AnnotationIdCollection - Class in org.apache.ctakes.temporal.utils
-
Author: SPF
Affiliation: CHIP-NLP
Date: 6/17/13
- AnnotationIdCollection(ArrayList<BinaryTextRelation>) - Constructor for class org.apache.ctakes.temporal.utils.AnnotationIdCollection
-
- annotationNode(JCas, Annotation) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- annotationNode(JCas, int, int) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- AnnotationPairer<MENTION_TYPE,PAIR_TYPE> - Interface in org.apache.ctakes.coreference.ae.pairing
-
- annotations - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- annotationsClone() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- AnnotationSelector - Class in org.apache.ctakes.coreference.util
-
- AnnotationSelector() - Constructor for class org.apache.ctakes.coreference.util.AnnotationSelector
-
- annotationSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The annotation-valued annotation attributes (i.e.
- AnnotationStatisticsCompact<OUTCOME_TYPE extends Comparable<? super OUTCOME_TYPE>> - Class in org.apache.ctakes.assertion.eval
-
Stores statistics for comparing Annotations extracted by a system to gold
Annotations.
- AnnotationStatisticsCompact() - Constructor for class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Create an AnnotationStatisticsCompact that compares Annotations based on their begin and end
offsets, plus a Feature of the Annotation that represents the outcome or label.
- annotationToFeatureValue(String) - Static method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Creates a Function that extracts a feature value from a TOP.
- annotationToNull() - Static method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Creates a Function that always returns null.
- annotationToSpan() - Static method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Creates a Function that converts an Annotation into a hashable representation
of its begin and end offsets.
- AnnotationTreeUtils - Class in org.apache.ctakes.constituency.parser.util
-
- AnnotationTreeUtils() - Constructor for class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- annotationTypes - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- annotationTypes - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- annotationViewGenerator - Variable in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
- annotationViewGenerator - Variable in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
- ANNOTATOR_CLASSES - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- AnnotLocationComparator() - Constructor for class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier.AnnotLocationComparator
-
- AnnotOffsetComparator - Class in org.apache.ctakes.coreference.util
-
- AnnotOffsetComparator() - Constructor for class org.apache.ctakes.coreference.util.AnnotOffsetComparator
-
- ANY_ADJECTIVE - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ANY_DEPREL - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ANY_NOUN - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ANY_POS - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ANY_TOKEN - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
Static identifiers used to build Regex expressions
- ANY_VERB - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ApiConcept - Class in org.apache.ctakes.assertion.stub
-
- ApiConcept() - Constructor for class org.apache.ctakes.assertion.stub.ApiConcept
-
- App - Class in org.apache.ctakes.jdl
-
Hello world!
- App() - Constructor for class org.apache.ctakes.jdl.App
-
- append(JCas, FSList, TOP) - Static method in class org.apache.ctakes.core.util.ListFactory
-
- append(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- append(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- append(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- appendOptional(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- appendOptional(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- appendOptional(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- appendText(String) - Method in class org.apache.ctakes.gui.component.LoggerPanel
-
- appendText(String) - Method in class org.apache.ctakes.gui.component.SystemOutPanel
-
- AppJdl - Class in org.apache.ctakes.jdl
-
Java data loader Application.
- AppJdl(String, String, String) - Constructor for class org.apache.ctakes.jdl.AppJdl
-
- ApplicationContextHolder - Class in org.apache.ctakes.ytex.uima
-
get the spring bean application context.
- ApplicationContextHolder() - Constructor for class org.apache.ctakes.ytex.uima.ApplicationContextHolder
-
- apply(Feature) - Method in class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- apply(Feature) - Method in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- apply(Feature) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.BrownClusterFeatureFunction
-
- apply(Feature) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.FedaFeatureFunction
-
- apply(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- apply(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- apply(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- apply(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.OddsRatioFeatureSelection
-
- applyFilter(Collection<MetaDataHit>) - Method in interface org.apache.ctakes.dictionary.lookup.filter.CollectionFilter
-
Prunes the Collection of MetaDataHit objects that meet the filter
implementation's match criteria.
- applyFilter(Collection<MetaDataHit>) - Method in class org.apache.ctakes.dictionary.lookup.filter.TruncateCollectionFilterImpl
-
Implementation
- AppMain - Class in org.apache.ctakes.jdl
-
Java data loader Main.
- ApproximateMath - Class in org.apache.ctakes.utils.wiki
-
- ApproximateMath() - Constructor for class org.apache.ctakes.utils.wiki.ApproximateMath
-
- ApproximateSimilarity - Class in org.apache.ctakes.utils.wiki
-
- ApproximateSimilarity() - Constructor for class org.apache.ctakes.utils.wiki.ApproximateSimilarity
-
- arg1begin - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- arg1end - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- arg2begin - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- arg2end - Variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- ArgContextProvider - Class in org.apache.ctakes.temporal.nn.data
-
- ArgContextProvider() - Constructor for class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
- ArgumentInfo - Class in org.apache.ctakes.assertion.cr
-
Information about a relation argument.
- ArgumentInfo - Class in org.apache.ctakes.relationextractor.knowtator
-
Information about a relation argument.
- ArgumentOrderFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Features that indicate the order of the arguments (e.g.
- ArgumentOrderFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor
-
- ArrayListMap<K,V> - Class in org.apache.ctakes.core.util.collection
-
Author: SPF
Affiliation: CHIP-NLP
Date: 7/23/14
- ArrayListMap() - Constructor for class org.apache.ctakes.core.util.collection.ArrayListMap
-
- ArrayListMap(int) - Constructor for class org.apache.ctakes.core.util.collection.ArrayListMap
-
- arrayOfArrayOfTokens - Variable in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- ASNEEDED - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- AspectualTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
Never called.
- AspectualTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
Internal - constructor used by generator
- AspectualTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
- AspectualTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- AspectualTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- asqrt(int) - Static method in class org.apache.ctakes.utils.wiki.ApproximateMath
-
- asqrt(double) - Static method in class org.apache.ctakes.utils.wiki.ApproximateMath
-
- assemble(Serializable, Object) - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- assemble(Serializable, Object) - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- Assertion - Class in org.apache.ctakes.assertion.medfacts.types
-
Updated by JCasGen Mon Apr 24 21:42:35 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-assertion/target/jcasgen/typesystem.xml
- Assertion() - Constructor for class org.apache.ctakes.assertion.medfacts.types.Assertion
-
Never called.
- Assertion(int, TOP_Type) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Assertion
-
Internal - constructor used by generator
- Assertion(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Assertion
-
- Assertion(JCas, int, int) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Assertion
-
- ASSERTION_MODEL_PARAM - Static variable in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- Assertion_Type - Class in org.apache.ctakes.assertion.medfacts.types
-
Updated by JCasGen Mon Apr 24 21:42:35 EDT 2017
- Assertion_Type(JCas, Type) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
initialize variables to correspond with Cas Type and Features
- AssertionAboveLeftTreeExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- AssertionAboveLeftTreeExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionAboveLeftTreeExtractor
-
- AssertionAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts
-
- AssertionAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- AssertionAnalysisEngineFit - Class in org.apache.ctakes.assertion.medfacts
-
- AssertionAnalysisEngineFit() - Constructor for class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- AssertionAnnotation - Class in org.apache.ctakes.assertion.stub
-
- AssertionAnnotation() - Constructor for class org.apache.ctakes.assertion.stub.AssertionAnnotation
-
- AssertionCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- AssertionCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- AssertionCleartkAnalysisEngine.FEATURE_CONFIG - Enum in org.apache.ctakes.assertion.medfacts.cleartk
-
- AssertionComponents - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
- AssertionComponents() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.AssertionComponents
-
- AssertionConst - Class in org.apache.ctakes.assertion.util
-
- AssertionConst() - Constructor for class org.apache.ctakes.assertion.util.AssertionConst
-
- AssertionCuePhraseAnnotation - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- AssertionCuePhraseAnnotation - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- AssertionCuePhraseAnnotation - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- AssertionCuePhraseAnnotation - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- AssertionCuePhraseAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
Never called.
- AssertionCuePhraseAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
Internal - constructor used by generator
- AssertionCuePhraseAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
- AssertionCuePhraseAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
- AssertionCuePhraseAnnotation_Type - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- AssertionCuePhraseAnnotation_Type - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- AssertionCuePhraseAnnotation_Type - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- AssertionCuePhraseAnnotation_Type - Class in org.apache.ctakes.typesystem.type.temporary.assertion
-
A cue phrase indicating potential negation, uncertainty, or conditional
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- AssertionCuePhraseAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- AssertionCuePhraseConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
Implementation that takes Rxnorm dictionary lookup hits and stores only the
ones that are also present in the Orange Book.
- AssertionCuePhraseConsumerImpl(UimaContext, Properties, int) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- AssertionCuePhraseConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- AssertionDecoderConfiguration - Class in org.apache.ctakes.assertion.stub
-
- AssertionDecoderConfiguration() - Constructor for class org.apache.ctakes.assertion.stub.AssertionDecoderConfiguration
-
- AssertionDependencyTreeExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- AssertionDependencyTreeExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionDependencyTreeExtractor
-
- AssertionDepUtils - Class in org.apache.ctakes.assertion.util
-
- AssertionDepUtils() - Constructor for class org.apache.ctakes.assertion.util.AssertionDepUtils
-
- AssertionEvaluation - Class in org.apache.ctakes.assertion.eval
-
- AssertionEvaluation(File, File, ArrayList<String>, Class<? extends DataWriter<String>>, String...) - Constructor for class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- AssertionEvaluation.HashableAnnotation - Class in org.apache.ctakes.assertion.eval
-
- AssertionEvaluation.OnlyGoldAssertions - Class in org.apache.ctakes.assertion.eval
-
Class that copies the manual
Modifier annotations to the default CAS.
- AssertionEvaluation.Options - Class in org.apache.ctakes.assertion.eval
-
- AssertionEvaluation.ReferenceAnnotationsSystemAssertionClearer - Class in org.apache.ctakes.assertion.eval
-
Class that copies the manual
Modifier annotations to the default CAS.
- AssertionEvaluation.ReferenceIdentifiedAnnotationsSystemToGoldCopier - Class in org.apache.ctakes.assertion.eval
-
Class that copies the manual
Modifier annotations to the default CAS.
- AssertionEvaluation.ReferenceSupportingAnnotationsSystemToGoldCopier - Class in org.apache.ctakes.assertion.eval
-
Class that copies the manual
Modifier annotations to the default CAS.
- AssertionEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold - Class in org.apache.ctakes.assertion.eval
-
Annotator that removes cTAKES EntityMentions and Modifiers from the system
view, and copies over the manually annotated EntityMentions and Modifiers
from the gold view.
- AssertionFileProcessor - Class in org.apache.ctakes.assertion.stub
-
- AssertionFileProcessor() - Constructor for class org.apache.ctakes.assertion.stub.AssertionFileProcessor
-
- AssertionSampleFeatureGenerator - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- AssertionSampleFeatureGenerator() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.AssertionSampleFeatureGenerator
-
- AssertionTreeUtils - Class in org.apache.ctakes.assertion.util
-
- AssertionTreeUtils() - Constructor for class org.apache.ctakes.assertion.util.AssertionTreeUtils
-
- assignPatientLevelSmokingStatus() - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
performs the patient-level smoking status classification based on document-level classification
each patient is assigned only one final smoking status
RULE:
If exists only U assign U
Else if exist N and there is no PCS assign N
Else if exist S and there is no PC assign S
Else if exist P or C (can be both)
If exists either P or C assign P or C respectively
Else if exist both P and C
If(C freq >= P freq) assign C
Else assign P
- AssociatedCodeElement - Class in org.apache.ctakes.drugner.elements
-
- AssociatedCodeElement() - Constructor for class org.apache.ctakes.drugner.elements.AssociatedCodeElement
-
- AssociatedCodeElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.AssociatedCodeElement
-
- associatedCodePrimary - Variable in class org.apache.ctakes.drugner.DrugMention
-
- associatedCodeSecondary - Variable in class org.apache.ctakes.drugner.DrugMention
-
terminology unique identifier (e.g.
- AssociatedCodeToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- AssociatedCodeToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.AssociatedCodeToken
-
- AssociatedPrimaryCodeElement - Class in org.apache.ctakes.drugner.elements
-
- AssociatedPrimaryCodeElement() - Constructor for class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
-
- AssociatedPrimaryCodeElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
-
- AssociatedSecondaryCodeElement - Class in org.apache.ctakes.drugner.elements
-
- AssociatedSecondaryCodeElement() - Constructor for class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
-
- AssociatedSecondaryCodeElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
-
- ATTR_BODYLATERALITY_DISTAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_DORSAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_INFERIOR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_LATERAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_MEDIAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_PROXIMAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_SUPERIOR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_UNMARKED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYLATERALITY_VENTRAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYSIDE_BILATERAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYSIDE_LEFT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYSIDE_RIGHT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_BODYSIDE_UNMARKED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_HISTORYOF_INDICATOR_ABSENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_HISTORYOF_INDICATOR_PRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_INSTANCE_ID - Static variable in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
value instance_id.
- ATTR_LAB_ABNORMAL_TRUE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ABNORMAL_VERYTRUE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_DELTAFLAG_CHANGEDOWN - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_DELTAFLAG_CHANGEUP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_DELTAFLAG_NOCHANGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ESTIMATED_FLAG_FALSE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ESTIMATED_FLAG_TRUE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_1ORMORE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_2ORMORE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_3ORMORE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_4ORMORE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_ANTICOMPLEMENTARYPRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_CYTOTOXICPRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_DETECTED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_INTERMEDIATE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_INTERMEDIATERESISTANCE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_MODERATELYSUSCEPTIBLE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_NEGATIVE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_NO_OR_NA_RANGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_NORMAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_NOTDETECTED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_POSITIVE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_QUALITYCONTROLFAIL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_REACTIVE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_RESISTANT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_SMALL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_SUSCEPTIBLE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_TRACE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_VERYSUSCEPTIBLE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_LAB_ORDINAL_WEAKLY_REACTIVE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ALLERGY_INDICATOR_ABSENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ALLERGY_INDICATOR_PRESENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_1 - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_2 - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_3 - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_4 - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_5 - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_DOSAGE_UNDETERMINED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_AEROSOL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_CAPSULE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_CREAM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_ELIXIR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_EMULSION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_ENEMA - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_GEL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_IMPLANT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_INHALANT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_INJECTION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_LIQUID - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_LOTION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_LOZENGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_OINTMENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_PATCH - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_PELLET - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_PILL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_POWDER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SHAMPOO - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SOAP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SOLUTION - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SPRAY - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SUPPOSITORY - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_SYRUP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_FORM_TABLET - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_ENTERAL_GASTRIC - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_ENTERAL_ORAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_ENTERAL_RECTAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAARTERIAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRACARDIAC - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAMUSCULAR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAPERIOTONEAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRATHECAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAVENOUS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_SUBCUTANEOUS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_TRANSDERMAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_PARENTERAL_TRANSMUCOSAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_TOPICAL - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_ROUTE_UNDETERMINED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_STATUSCHANGE_DECREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_STATUSCHANGE_INCREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_STATUSCHANGE_NOCHANGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_STATUSCHANGE_START - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_MEDICATION_STATUSCHANGE_STOP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SEVERITY_MODERATE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SEVERITY_SEVERE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SEVERITY_SLIGHT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SEVERITY_UNMARKED - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SUBJECT_DONOR_FAMILY_MEMBER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SUBJECT_DONOR_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SUBJECT_FAMILY_MEMBER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SUBJECT_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ATTR_SUBJECT_PATIENT - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- Attribute - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Attribute
-
Never called.
- Attribute(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Attribute
-
Internal - constructor used by generator
- Attribute(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Attribute
-
- Attribute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The semantic encapsulation of a modifer.
- Attribute_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Attribute_Type
-
initialize variables to correspond with Cas Type and Features
- AttributeCalculator - Class in org.apache.ctakes.coreference.util
-
- AttributeCalculator(JCas) - Constructor for class org.apache.ctakes.coreference.util.AttributeCalculator
-
- AttributeFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- AttributeFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.AttributeFeatureExtractor
-
- AttributeProductKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
Expects numeric values as input.
- AttributeProductKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.AttributeProductKernel
-
- AttributeRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
Never called.
- AttributeRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
Internal - constructor used by generator
- AttributeRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
- AttributeRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A real-world relationship between an Element and an Attribute.
- AttributeRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
initialize variables to correspond with Cas Type and Features
- attributes - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
- ATTRIBUTES_TO_IGNORE - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- attributeType - Variable in class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation.Options
-
- attributeType - Variable in class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation.Options
-
- AttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- AttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
Never called.
- AttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
Internal - constructor used by generator
- AttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
- AttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
- AttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- AttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
-
initialize variables to correspond with Cas Type and Features
- AutoTermExtractor - Class in org.apache.ctakes.gui.dictionary.umls
-
- AvailablesListModel - Class in org.apache.ctakes.gui.pipeline.bit.available
-
- AvailablesListModel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.available.AvailablesListModel
-
- AvailablesRenderer - Class in org.apache.ctakes.gui.pipeline.bit.available
-
- AvailablesRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.available.AvailablesRenderer
-
- B3Type - Enum in org.apache.ctakes.coreference.eval.helpers
-
- BackwardsTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- BackwardsTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- badNotes - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- BagOfAnnotationsGenerator<T extends org.apache.uima.jcas.tcas.Annotation,K> - Class in org.apache.ctakes.clinicalpipeline.runtime
-
- BagOfAnnotationsGenerator(String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator
-
- BagOfAnnotationsGenerator(String, String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator
-
- BagOfCUIsGenerator - Class in org.apache.ctakes.clinicalpipeline.runtime
-
- BagOfCUIsGenerator(String, String) - Constructor for class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator
-
- BagOfWordsData - Class in org.apache.ctakes.ytex.kernel
-
Data structure populated by AbstractBagOfWordsExporter that has all the
instance attributes needed for exporting to various formats.
- BagOfWordsData() - Constructor for class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- BagOfWordsDecorator - Interface in org.apache.ctakes.ytex.kernel
-
Classes that delegate to the BagOfWordsExporter can pass this decorator in to
add additional attributes
- BagOfWordsExporter - Interface in org.apache.ctakes.ytex.kernel
-
- BASE_DIRECTORY - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
CHANGE THESE
- BaseClassifierEvaluationParser - Class in org.apache.ctakes.ytex.kernel
-
miscellaneous methods used for parsing various output types
- BaseClassifierEvaluationParser() - Constructor for class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- BaseClassifierEvaluationParser.InstanceClassInfo - Class in org.apache.ctakes.ytex.kernel
-
- BaseDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup
-
- BaseDictionaryImpl() - Constructor for class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl
-
Deprecated.
- BaseItemCell - Interface in org.apache.ctakes.core.cc.pretty.cell
-
Item cell for most basic item: text and part of speech
- Baseline1DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotated degree_of relation in sentences containing a single entity mention
of a valid degree_of type and a single modifier.
- Baseline1DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator
-
- Baseline1EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotate location_of relation between two entities in sentences containing
exactly two entities (where the entities are of the correct types).
- Baseline1EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
-
- Baseline2DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotated degree_of relation between two entities in sentences with multiple modifiers (arg2)
and a single legitimate degree_of arg1 (i.e.
- Baseline2DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
-
- Baseline2EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotate location_of relation between two entities in sentences with multiple anatomical sites
and a single legitimate location_of arg2.
- Baseline2EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
-
- Baseline3DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
This baseline links each modifier with the closest entity of a type
that's suitable for degree_of, as long as there is no intervening modifier.
- Baseline3DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
-
- Baseline3EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
This baseline links each anatomical site with the closest entity of a type
that's suitable for location_of, as long as there is no intervening anatomical site.
- Baseline3EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
-
- Baseline4DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotate degree_of relation between two entities whenever
they are enclosed within the same noun phrse.
- Baseline4DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline4DegreeOfRelationExtractorAnnotator
-
- Baseline4EntityMentionPairRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae.baselines
-
Annotate location_of relation between two entities whenever
they are enclosed within the same noun phrse.
- Baseline4EntityMentionPairRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator
-
- BaseLookupConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
Provides some base functionality for subclasses.
- BaseLookupConsumerImpl() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl
-
- BaseLookupConsumerImpl.LookupHitKey - Class in org.apache.ctakes.dictionary.lookup.ae
-
Using a String as a HashMap Key can be slow as
the hashCode is computed per character with each call - ditto for equals
- BaseMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup
-
- BaseMetaDataHitImpl() - Constructor for class org.apache.ctakes.dictionary.lookup.BaseMetaDataHitImpl
-
Deprecated.
- BaseSimilarityMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
- BaseSimilarityMetric(ConceptSimilarityService) - Constructor for class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
- BaseSparseDataFormatter - Class in org.apache.ctakes.ytex.kernel
-
- BaseSparseDataFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
- BaseToken - Interface in org.apache.ctakes.core.fsm.token
-
- BaseToken - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
Never called.
- BaseToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
Internal - constructor used by generator
- BaseToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
- BaseToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
- BaseToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number.
- BaseToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
initialize variables to correspond with Cas Type and Features
- BaseTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- BaseTokenAdapter(Annotation) - Constructor for class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter
-
- BaseTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
- BaseTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter
-
- BaseTokenImpl - Class in org.apache.ctakes.core.fsm.output
-
- BaseTokenImpl(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.BaseTokenImpl
-
- BaseTokenImpl - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- BaseTokenImpl(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl
-
- batchProcessComplete() - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- BatchRunner - Class in org.apache.ctakes.assertion.stub
-
- BatchRunner() - Constructor for class org.apache.ctakes.assertion.stub.BatchRunner
-
- begin - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation
-
- begin - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span
-
The offset of the first character in the text span.
- BeginAndEndCharacterOffsetPair() - Constructor for class org.apache.ctakes.assertion.stub.LineTokenToCharacterOffsetConverter.BeginAndEndCharacterOffsetPair
-
- beginTreeMap - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- BEST_PARAMETERS - Static variable in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
-
- BEST_PARAMETERS - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- BF - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- bfs(Queue<TreebankNode>, TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator
-
- BinaryAlphaFeatureSelection<OUTCOME_T> - Class in org.apache.ctakes.temporal.ae.feature.selection
-
Selects features via binary Krippendorff's Alpha-Reliability between the a extracted feature
and the outcome values they are paired with in classification instances.
- BinaryAlphaFeatureSelection(String) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- BinaryAlphaFeatureSelection(String, double) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- BinaryAlphaFeatureSelection(String, double, String) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- binaryLookup(String) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Determines whether the input text is contained by the Dictionary.
- BinaryTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
Never called.
- BinaryTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
Internal - constructor used by generator
- BinaryTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
- BinaryTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type for relationships between two spans of text.
- BinaryTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- bins - Static variable in class org.apache.ctakes.temporal.duration.Utils
-
- BitCellRenderer - Class in org.apache.ctakes.gui.pipeline.bit
-
- BitCellRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.BitCellRenderer
-
- BitInfoPanel - Class in org.apache.ctakes.gui.pipeline.bit
-
- BitInfoPanel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- BO - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- BodyLaterality - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality() - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
Never called.
- BodyLaterality(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
Internal - constructor used by generator
- BodyLaterality(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
- BodyLaterality_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLaterality_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
-
initialize variables to correspond with Cas Type and Features
- BodyLateralityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
Never called.
- BodyLateralityModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
Internal - constructor used by generator
- BodyLateralityModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
- BodyLateralityModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
- BodyLateralityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.).
- BodyLateralityModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type
-
initialize variables to correspond with Cas Type and Features
- BodySide - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- BodySide - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- BodySide - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- BodySide - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:50 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- BodySide() - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodySide
-
Never called.
- BodySide(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodySide
-
Internal - constructor used by generator
- BodySide(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodySide
-
- BodySide_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- BodySide_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- BodySide_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- BodySide_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:50 EDT 2017
- BodySide_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
-
initialize variables to correspond with Cas Type and Features
- BodySideModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- BodySideModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- BodySideModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- BodySideModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- BodySideModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
Never called.
- BodySideModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
Internal - constructor used by generator
- BodySideModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
- BodySideModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
- BodySideModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- BodySideModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- BodySideModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- BodySideModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Value set: unmarked (default), left, right, bilateral
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- BodySideModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type
-
initialize variables to correspond with Cas Type and Features
- BooleanLabeledFS - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- BooleanLabeledFS() - Constructor for class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
Never called.
- BooleanLabeledFS(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
Internal - constructor used by generator
- BooleanLabeledFS(JCas) - Constructor for class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
- BooleanLabeledFS_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- BooleanLabeledFS_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
initialize variables to correspond with Cas Type and Features
- BooleanLabeledTree - Class in org.apache.ctakes.constituency.parser.uima.type
-
Updated by JCasGen Mon Apr 24 21:42:31 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-constituency-parser/target/jcasgen/typesystem.xml
- BooleanLabeledTree() - Constructor for class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
Never called.
- BooleanLabeledTree(int, TOP_Type) - Constructor for class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
Internal - constructor used by generator
- BooleanLabeledTree(JCas) - Constructor for class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
- BooleanLabeledTree(JCas, int, int) - Constructor for class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
- BooleanLabeledTree_Type - Class in org.apache.ctakes.constituency.parser.uima.type
-
Updated by JCasGen Mon Apr 24 21:42:31 EDT 2017
- BooleanLabeledTree_Type(JCas, Type) - Constructor for class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
initialize variables to correspond with Cas Type and Features
- booleanSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The boolean-valued annotation attributes
- BooleanUtil - Class in org.apache.ctakes.ytex.uima.model
-
- BooleanUtil() - Constructor for class org.apache.ctakes.ytex.uima.model.BooleanUtil
-
- BOUNDARY_ANN_TYPE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
Annotation type that defines the boundary within which the dictionary hits should be present.
- BrownClusterFeatureFunction - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- BrownClusterFeatureFunction() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.BrownClusterFeatureFunction
-
- BsvConceptFactory - Class in org.apache.ctakes.dictionary.lookup2.concept
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/9/2014
- BsvConceptFactory(String, UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory
-
- BsvConceptFactory(String, String) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory
-
- BsvConceptFactory.CuiTuiTerm - Class in org.apache.ctakes.dictionary.lookup2.concept
-
- BsvRareWordDictionary - Class in org.apache.ctakes.dictionary.lookup2.dictionary
-
A RareWordDictionary created from a bar-separated value (BSV) file.
- BsvRareWordDictionary(String, UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.BsvRareWordDictionary
-
- BsvRareWordDictionary(String, String) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.BsvRareWordDictionary
-
- BsvRegexSectionizer - Class in org.apache.ctakes.core.ae
-
- BsvRegexSectionizer() - Constructor for class org.apache.ctakes.core.ae.BsvRegexSectionizer
-
- build() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- build(Reader, String, String, boolean) - Static method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
-
Reads from a character stream.
- build(Reader, String, String, FieldConstraint, boolean) - Static method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
-
Reads from a character stream.
- build(Reader, String, String[], boolean) - Static method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
-
Reads from a character stream.
- build(Reader, String, String[], FieldConstraint, boolean) - Static method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
-
Reads from a character stream.
- buildAlignedTree(JCas, Parse, Sentence) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- buildAlignedTree(JCas, Parse, FSArray, Sentence) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- buildList(JCas, TOP[]) - Static method in class org.apache.ctakes.core.util.ListFactory
-
Builds a FSList from an array of JCas objects.
- buildList(JCas, List<? extends TOP>) - Static method in class org.apache.ctakes.core.util.ListFactory
-
- buildSentenceBoundaryMap() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- buildSentenceToTokenNumberMap() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- buildTokenBoundaryMap() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- CacheKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
consolidate caching in this class.
- CacheKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- CacheKeyGenerator - Interface in org.apache.ctakes.ytex.kernel.evaluator
-
- calcAlias() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcAliasAnatomy() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcAliasDisorder() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcAliasDrug() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcAliasFinding() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcAliasProcedure() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothDefinitesC() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothDefinitesI() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothDefinitesNA() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothPronouns() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothPronounsC() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothPronounsI() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcBothPronounsNA() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcCatNgrams(Integer, Markable) - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcClosestComp() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcDefinite1() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcDefinite2() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcDemonstrative2() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcDepPath() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcEndMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcEntityEndMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcEntityExactMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcEntityStartMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcEntityWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcExactMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcFullPath() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcIndefinite() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcIsAnatomicalSite() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcIsDisorder() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcIsDrug() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcIsFinding() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcIsProcedure() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcmDefinite() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmDemonstrative() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcMidMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcmIndefinite() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmIsAnatomicalSite() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmIsDisorder() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmIsDrug() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmIsFinding() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmIsProcedure() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmNPHead() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmNumber() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmNumPlu() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmNumSing() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmNumUnk() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcModifier() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcmProStr() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmSimilarStr() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcmWnClass() - Method in class org.apache.ctakes.coreference.util.AnaphoricityAttributeCalculator
-
- calcNegatedBoth() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcNonNegatedBoth() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcNPHead() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcNPSubj(TreebankNode) - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPSubj1() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPSubj2() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPSubjBoth() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderPP1() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderPP2() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderS1() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderS2() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderVP1() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNPunderVP2() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcNumberMatchC() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcNumberMatchI() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcNumberMatchNA() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcPathLength() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcPermStrDist() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcPronoun() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcPronoun1() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcPronoun2() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcProStr() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcSameSection() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
Determine whether the markables are located within the same section
- calcSentenceDistance() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcSimSum() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcSoonStr() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcSoonStrNonpro() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcStartMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcStringMatch() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcTokenDistance() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calculateBeginAndEndOfConcept(ApiConcept) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- calculateBeginAndEndOfConcept(int, int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- calculateBeginAndEndOfConcept(ApiConcept) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- calculateBeginAndEndOfConcept(int, int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
delegate to converter to determine offset.
- calculateBeginAndEndOfConcept(ApiConcept) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- calcWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- calcWnClass() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWnClassC() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWnClassI() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWnClassNA() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWordOverlap() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWordsStr() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- calcWordsSubstr() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- call() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl.SliceEvaluator
-
- Callback() - Constructor for class org.apache.ctakes.relationextractor.data.analysis.Utils.Callback
-
- Callback() - Constructor for class org.apache.ctakes.temporal.duration.Utils.Callback
-
- CAPS_ALL - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken
-
- CAPS_ALL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- CAPS_FIRST_ONLY - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken
-
- CAPS_FIRST_ONLY - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- CAPS_MIXED - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken
-
- CAPS_MIXED - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- CAPS_NONE - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken
-
- CAPS_NONE - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- CAPS_UNKNOWN - Static variable in interface org.apache.ctakes.core.fsm.token.WordToken
-
- CAPS_UNKNOWN - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- CAPSULE - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- caretUpdate(CaretEvent) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
- CasConsumer - Class in org.apache.ctakes.core.cc
-
CasConsumer that writes a JCas (the current view) to an xml file
- CasConsumer() - Constructor for class org.apache.ctakes.core.cc.CasConsumer
-
- CASConsumerTestDriver - Class in org.apache.ctakes.core.cc
-
- CASConsumerTestDriver() - Constructor for class org.apache.ctakes.core.cc.CASConsumerTestDriver
-
- CasIndexer<T extends org.apache.uima.jcas.tcas.Annotation> - Class in org.apache.ctakes.assertion.medfacts
-
- CasIndexer(JCas, Type) - Constructor for class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- CasIndexer() - Constructor for class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- cat - Variable in class org.apache.ctakes.utils.tree.SimpleTree
-
- CategoricalDistribution - Class in org.apache.ctakes.relationextractor.data
-
Class for generating samples from a three dimensional Categorical distribution.
- category - Variable in class org.apache.ctakes.assertion.cr.RelationInfo
-
- category - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- category_frequency - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- category_frequency - Static variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- CausesBringsAbout - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- CausesBringsAbout - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- CausesBringsAbout - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- CausesBringsAbout - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- CausesBringsAbout() - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
Never called.
- CausesBringsAbout(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
Internal - constructor used by generator
- CausesBringsAbout(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
- CausesBringsAbout_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- CausesBringsAbout_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- CausesBringsAbout_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- CausesBringsAbout_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- CausesBringsAbout_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type
-
initialize variables to correspond with Cas Type and Features
- CausesBringsAboutRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
Identifies causes/brings_about relation.
- CausesBringsAboutRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.CausesBringsAboutRelationExtractorAnnotator
-
- CausesBringsAboutTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- CausesBringsAboutTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- CausesBringsAboutTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- CausesBringsAboutTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- CausesBringsAboutTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
Never called.
- CausesBringsAboutTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
Internal - constructor used by generator
- CausesBringsAboutTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
- CausesBringsAboutTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- CausesBringsAboutTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- CausesBringsAboutTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- CausesBringsAboutTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- CausesBringsAboutTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- CB - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- CDA_PROCESSING - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
Specifies whether the cas should be handled as CDA (via 'plaintext' sofa view) or default (flat file)
- CdaCasInitializer - Class in org.apache.ctakes.preprocessor.ae
-
Bootstraps the CAS by:
Transforms document's original CDA text into plain text,
inserting section (segment) markers into text .
Transformation also inserts hyphens into words that should be hyphenated
Stores the resulting text in a new View (which has its own Sofa)
Detects sections and adds Segment (aka section) annotations
Extracts document level data and stores in CAS as Property annotations.
- CdaCasInitializer() - Constructor for class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- CDASegmentAnnotator - Class in org.apache.ctakes.core.ae
-
Creates segment annotations based on the ccda_sections.txt file Which is
based on HL7/CCDA/LONIC standard headings Additional custom heading names can
be added to the file.
- CDASegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- CEAFType - Enum in org.apache.ctakes.coreference.eval.helpers
-
- CellRendererLabel - Class in org.apache.ctakes.gui.component
-
- CellRendererLabel() - Constructor for class org.apache.ctakes.gui.component.CellRendererLabel
-
- CellRendererLabel(Icon) - Constructor for class org.apache.ctakes.gui.component.CellRendererLabel
-
- CellRendererLabel(String) - Constructor for class org.apache.ctakes.gui.component.CellRendererLabel
-
- CellRendererPanel - Class in org.apache.ctakes.gui.component
-
- CellRendererPanel(LayoutManager) - Constructor for class org.apache.ctakes.gui.component.CellRendererPanel
-
- CENTER - Static variable in class org.apache.ctakes.gui.component.TextLineNumber
-
- changedUpdate(DocumentEvent) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
- changeNumThreads(int) - Method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
-
- changeStatus - Variable in class org.apache.ctakes.drugner.DrugMention
-
aka change.
- CharacterOffsetToLineTokenConverter - Interface in org.apache.ctakes.assertion.stub
-
- CharacterOffsetToLineTokenConverterCtakesImpl - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
-
- CharacterOffsetToLineTokenConverterCtakesImpl() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- CharacterOffsetToLineTokenConverterCtakesImpl(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- CharacterOffsetToLineTokenConverterDefaultImpl - Class in org.apache.ctakes.assertion.stub
-
- CharacterOffsetToLineTokenConverterDefaultImpl(String) - Constructor for class org.apache.ctakes.assertion.stub.CharacterOffsetToLineTokenConverterDefaultImpl
-
- characters(char[], int, int) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- characters(char[], int, int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
- CharacterToken - Interface in org.apache.ctakes.core.fsm.token
-
- CharacterTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- CharacterTokenAdapter(BaseToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter
-
- CharacterTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
- CharacterTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter
-
- CHARS_PER_WORD - Static variable in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- checkFileRead(String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- checkFileRead(String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- CheckKnowtatorAnnotations - Class in org.apache.ctakes.temporal.utils
-
Checks Knowtator XML for possible annotation errors
- CheckKnowtatorAnnotations() - Constructor for class org.apache.ctakes.temporal.utils.CheckKnowtatorAnnotations
-
- CheckSpecialWordRelationExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- CheckSpecialWordRelationExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.CheckSpecialWordRelationExtractor
-
- checkTermByConceptId(String) - Method in interface org.apache.ctakes.ytex.web.search.ConceptSearchService
-
if the conceptId is a valid conceptId, get the corresponding term
- checkTermByConceptId(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- Chi2FeatureSelection<OUTCOME_T> - Class in org.apache.ctakes.assertion.attributes.features.selection
-
Selects features via Chi-squared statistics between the features extracted from its sub-extractor
and the outcome values they are paired with in classification instances.
- Chi2FeatureSelection(String) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- Chi2FeatureSelection(String, double) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- Chi2FeatureSelection(String, double, boolean) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
Constructor that can let use control the yate's correction
- Chi2FeatureSelection<OUTCOME_T> - Class in org.apache.ctakes.temporal.ae.feature.selection
-
Selects features via Chi-squared statistics between the features extracted from its sub-extractor
and the outcome values they are paired with in classification instances.
- Chi2FeatureSelection(String) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- Chi2FeatureSelection(String, double) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- Chi2FeatureSelection(String, double, boolean) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
Constructor that can let use control the yate's correction
- children - Variable in class org.apache.ctakes.utils.tree.SimpleTree
-
- Chunk - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk() - Constructor for class org.apache.ctakes.typesystem.type.syntax.Chunk
-
Never called.
- Chunk(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Chunk
-
Internal - constructor used by generator
- Chunk(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Chunk
-
- Chunk(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Chunk
-
- Chunk_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker).
- Chunk_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
-
initialize variables to correspond with Cas Type and Features
- ChunkAdjuster - Class in org.apache.ctakes.chunker.ae.adjuster
-
UIMA annotator that uses a pattern and a rule about that pattern to adjust
certain annotations.
- ChunkAdjuster() - Constructor for class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
- ChunkAnnotation - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-drug-ner/target/jcasgen/typesystem.xml
- ChunkAnnotation() - Constructor for class org.apache.ctakes.drugner.type.ChunkAnnotation
-
Never called.
- ChunkAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.ChunkAnnotation
-
Internal - constructor used by generator
- ChunkAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.ChunkAnnotation
-
- ChunkAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.ChunkAnnotation
-
- ChunkAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
- ChunkAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- ChunkCreator - Interface in org.apache.ctakes.chunker.ae
-
Implementations of this interface are responsible for creating chunk
annotations.
- Chunker - Class in org.apache.ctakes.chunker.ae
-
This class provides a UIMA wrapper for the OpenNLP
opennlp.tools.chunker.Chunker class.
- Chunker() - Constructor for class org.apache.ctakes.chunker.ae.Chunker
-
- CHUNKER_CREATOR_CLASS_PARAM - Static variable in class org.apache.ctakes.chunker.ae.Chunker
-
"ChunkCreatorClass" is a required, single, string parameter that
specifies the chunker creator class to instantiate.
- CHUNKER_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.chunker.ae.Chunker
-
"ChunkerModel" is a required, single, string parameter that contains the
file name of the chunker model.
- ChunkingExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ChunkingExtractor(String, Chunking<?, SUB_CHUNK_TYPE, CHUNK_TYPE>, JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Constructor for class org.apache.ctakes.temporal.ae.feature.ChunkingExtractor
-
- CLASS - Static variable in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- CLASS_CURR_SMOKER - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_CURR_SMOKER_INT - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_KNOWN - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_NON_SMOKER - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_PAST_SMOKER - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_PAST_SMOKER_INT - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_SMOKER - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_SMOKER_INT - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- CLASS_UNKNOWN - Static variable in interface org.apache.ctakes.smokingstatus.Const
-
- classConditionalCounts - Variable in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- classConditionalCounts - Variable in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- classCounts - Variable in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- classCounts - Variable in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- ClassifiableEntries - Class in org.apache.ctakes.smokingstatus.ae
-
- ClassifiableEntries() - Constructor for class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- ClassifiableEntry - Class in org.apache.ctakes.smokingstatus.util
-
- ClassifiableEntry() - Constructor for class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- classifier - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- ClassifierEvaluation - Class in org.apache.ctakes.ytex.kernel.model
-
- ClassifierEvaluation() - Constructor for class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- classifierEvaluationDao - Variable in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- ClassifierEvaluationDao - Interface in org.apache.ctakes.ytex.kernel.dao
-
- classifierEvaluationDao - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- ClassifierEvaluationDaoImpl - Class in org.apache.ctakes.ytex.kernel.dao
-
- ClassifierEvaluationDaoImpl() - Constructor for class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- ClassifierEvaluationImporter - Class in org.apache.ctakes.ytex.kernel
-
parse classifier evaluation results.
- ClassifierEvaluationImporter() - Constructor for class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
- ClassifierEvaluationInstanceImporter(ClassifierEvaluation, boolean) - Constructor for class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl.ClassifierEvaluationInstanceImporter
-
- ClassifierEvaluationIRStat - Class in org.apache.ctakes.ytex.kernel.model
-
summary IR statistics.
- ClassifierEvaluationIRStat() - Constructor for class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- ClassifierEvaluationIRStat(ClassifierEvaluation, String, String, Integer, int, int, int, int) - Constructor for class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- ClassifierEvaluationParser - Interface in org.apache.ctakes.ytex.kernel
-
- ClassifierEvaluationParser.ParseOption - Enum in org.apache.ctakes.ytex.kernel
-
Property keys for various parse options
- ClassifierEvaluationResult - Class in org.apache.ctakes.ytex.kernel
-
- ClassifierEvaluationResult() - Constructor for class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- ClassifierEvaluationResults - Class in org.apache.ctakes.ytex.kernel
-
- ClassifierEvaluationResults() - Constructor for class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- ClassifierEvalUtil - Class in org.apache.ctakes.ytex.kernel
-
- ClassifierEvalUtil(String) - Constructor for class org.apache.ctakes.ytex.kernel.ClassifierEvalUtil
-
- ClassifierInstanceEvaluation - Class in org.apache.ctakes.ytex.kernel.model
-
- ClassifierInstanceEvaluation() - Constructor for class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- classify(List<Feature>) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
Predict an outcome given a set of features.
- classify(List<Feature>) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
Predict an outcome given a set of features.
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
Predict an outcome given a set of features.
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.F1BaselineEventTimeRelationAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.PrecisionBaselineEventTimeRelationAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventEventRelationAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventTimeRelationAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.TimidBaselineEventTimeRelationAnnotator
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
Predict an outcome given a set of features.
- classify(List<Feature>) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifier
-
- classifyBothDirections - Variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- classifyBothDirections - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- classifyWithLogic(HashMap<String, Boolean>) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
-
- classifyWithLogic(HashMap<String, Boolean>) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
-
- classifyWithLogic(HashMap<String, Boolean>) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- clear() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- clear() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- clear() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- clear() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- clear() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- clear() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- clear() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- clear(JLabel) - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- clear() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- clear() - Method in class org.apache.ctakes.jdl.common.PropertiesFile
-
Clears this hashtable.
- clear() - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
- clearCategoryFrequency() - Static method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- clearCollection(K) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
clearCollection the collection mapped with key
- clearCollection(K) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
clearCollection the collection mapped with key
- clearCollection(K) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
clearCollection the collection mapped with key
- clearCollection(K) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
clearCollection the collection mapped with key
- clearCollection(K) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
clearCollection the collection mapped with key
- clearCollection(K) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
clearCollection the collection mapped with key
- ClearDependencyUtility - Class in org.apache.ctakes.dependency.parser.util
-
- ClearDependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility
-
- ClearEventProperties() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties.ClearEventProperties
-
- ClearEventProperties() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.ClearEventProperties
-
- ClearEventProperties() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties.ClearEventProperties
-
- clearFold() - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
clear all data structures set up during initializeFold
- clearFold() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
clean up fold specific state
- clearFold() - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
clean up fold specific state
- clearFold() - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- clearLabel() - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
- clearLabel() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- clearLabel() - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- ClearNLPDependencyParserAE - Class in org.apache.ctakes.dependency.parser.ae
-
This class provides a UIMA wrapper for the CLEAR dependency parser.
- ClearNLPDependencyParserAE() - Constructor for class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- ClearNLPPOSTaggerAE - Class in org.apache.ctakes.postagger
-
This class provides a UIMA wrapper for the CLEAR POSTagger.
- ClearNLPPOSTaggerAE() - Constructor for class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- ClearNLPSemanticRoleLabelerAE - Class in org.apache.ctakes.dependency.parser.ae
-
This class provides a UIMA wrapper for the ClearNLP Semantic Role Labeler, which is
available here.
- ClearNLPSemanticRoleLabelerAE() - Constructor for class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- clearText() - Method in class org.apache.ctakes.gui.component.LoggerPanel
-
clear the text in this gui
- clearText() - Method in class org.apache.ctakes.gui.component.SystemOutPanel
-
clear the text in this gui
- ClearTKDocTimeRelAnnotator - Class in org.apache.ctakes.temporal.ae
-
for every cTAKES EventMention annotation, create a ClearTK Event Annotation
- ClearTKDocTimeRelAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ClearTKDocTimeRelAnnotator
-
- ClearTKDocumentCreationTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
for every cTAKES JCas, create a ClearTK Document Creation Time Annotation, fake span, no attribute.
- ClearTKDocumentCreationTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ClearTKDocumentCreationTimeAnnotator
-
- ClearTKLinkToTHYMELinkAnnotator - Class in org.apache.ctakes.temporal.ae
-
- ClearTKLinkToTHYMELinkAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ClearTKLinkToTHYMELinkAnnotator
-
- ClinicalFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.salience
-
- ClinicalFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.salience.ClinicalFeatureExtractor
-
- ClinicalNotePreProcessor - Class in org.apache.ctakes.preprocessor
-
Given an HL7 document, the text contained inside a section is extracted.
- ClinicalNotePreProcessor(InputStream, boolean) - Constructor for class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
Constructor
- ClinicalPipelineFactory - Class in org.apache.ctakes.clinicalpipeline
-
- ClinicalPipelineFactory.CopyNPChunksToLookupWindowAnnotations - Class in org.apache.ctakes.clinicalpipeline
-
- ClinicalPipelineFactory.RemoveEnclosedLookupWindows - Class in org.apache.ctakes.clinicalpipeline
-
- ClinicalPipelineWithUmls - Class in org.apache.ctakes.clinicalpipeline
-
Run the plaintext clinical pipeline, using the dictionary of terms from UMLS.
- ClinicalPipelineWithUmls() - Constructor for class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls
-
- CliOptionals - Interface in org.apache.ctakes.core.pipeline
-
Defines command line interface single-character options that are not ctakes defaults.
- CliOptionalsHandler - Class in org.apache.ctakes.core.pipeline
-
- clone() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Recursive, deep copy of this object, including attributes and references.
- clone() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- close() - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- close() - Method in class org.apache.ctakes.assertion.cr.NegExCorpusReader
-
- close() - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
- close() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
- close() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- close() - Method in class org.apache.ctakes.core.cr.FileTreeReader
- close() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
- close() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
- close() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
- close() - Method in class org.apache.ctakes.core.util.DotLogger
- close() - Method in class org.apache.ctakes.core.util.regex.RegexSpanFinder
-
shut down the executor
- close() - Method in class org.apache.ctakes.core.util.regex.TimeoutMatcher
-
shut down the executor
- close() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
- close() - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl
-
- close() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
- close() - Method in class org.apache.ctakes.utils.wiki.WikiIndex
-
- close() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- closeConnection() - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
Releases this Connection object's database.
- ClosestVerbExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ClosestVerbExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.ClosestVerbExtractor
-
- CLUSTER_RELATION_CATEGORY - Static variable in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- ClusterMentionPairer_ImplBase - Class in org.apache.ctakes.coreference.ae.pairing.cluster
-
- ClusterMentionPairer_ImplBase() - Constructor for class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterMentionPairer_ImplBase
-
- ClusterPairer - Class in org.apache.ctakes.coreference.ae.pairing.cluster
-
- ClusterPairer(int) - Constructor for class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterPairer
-
- clusterParams - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- ClusterUtils - Class in org.apache.ctakes.coreference.util
-
- ClusterUtils() - Constructor for class org.apache.ctakes.coreference.util.ClusterUtils
-
- CmdLineCpeRunner - Class in org.apache.ctakes.core.cpe
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/17/13
- CmdLineCpeRunner() - Constructor for class org.apache.ctakes.core.cpe.CmdLineCpeRunner
-
- CN - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- coin - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- coin - Variable in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- coin - Variable in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- coin - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- coin - Variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- collectCounts(String) - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- collectCuis() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds ae that maintains CUI information throughout the run.
- collectEntities() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds ae that maintains simple Entity information throughout the run.
- CollectionCreator<V,T extends Collection<V>> - Interface in org.apache.ctakes.core.util.collection
-
- CollectionCreatorFactory - Class in org.apache.ctakes.core.util.collection
-
- CollectionFilter - Interface in org.apache.ctakes.dictionary.lookup.filter
-
Filters a Collection of MetaDataHit objects.
- CollectionMap<K,V,T extends Collection<V>> - Interface in org.apache.ctakes.core.util.collection
-
Author: SPF
Affiliation: CHIP-NLP
Date: 6/24/14
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
-
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
closes the PreparedStatements
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer
-
This method sorts the frequency counts and prints out the resulting frequencies in descending
order to the frequency file in 'word|count' format.
- collectionProcessComplete() - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- collectionProcessComplete() - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator
-
Close db connections in UmlsToSnomedDbConsumerImpl
- collectionProcessComplete() - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- collectionProcessComplete() - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- collectionProcessComplete(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- collectionProcessComplete(ProcessTrace) - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
- collectionProcessComplete() - Method in class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation.ProcessRelations
-
- CollectionTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- CollectionTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- CollectionTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- CollectionTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- CollectionTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
Never called.
- CollectionTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
Internal - constructor used by generator
- CollectionTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
- CollectionTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- CollectionTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- CollectionTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- CollectionTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- CollectionTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- CollectionTextRelationIdentifiedAnnotationPair(CollectionTextRelation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- CollectionTextRelationIdentifiedAnnotationPair(CollectionTextRelation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- CollectionTextRelationIdentifiedAnnotationRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
Never called.
- CollectionTextRelationIdentifiedAnnotationRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
Internal - constructor used by generator
- CollectionTextRelationIdentifiedAnnotationRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
- CollectionTextRelationIdentifiedAnnotationRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A relation between a chain relation and an identified annotation mention.
- CollectionTextRelationIdentifiedAnnotationRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
initialize variables to correspond with Cas Type and Features
- ColorFactory - Class in org.apache.ctakes.gui.util
-
- column - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- Column() - Constructor for class org.apache.ctakes.jdl.schema.xdl.CsvLoadType.Column
-
- column - Variable in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
- Column() - Constructor for class org.apache.ctakes.jdl.schema.xdl.XmlLoadType.Column
-
- ColumnCsvLoadType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for columnCsvLoadType complex type.
- ColumnCsvLoadType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
- ColumnMappingInfo - Class in org.apache.ctakes.ytex.uima.mapper
-
- ColumnMappingInfo() - Constructor for class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- ColumnXmlLoadType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for columnXmlLoadType complex type.
- ColumnXmlLoadType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
- CombineCondition - Class in org.apache.ctakes.core.fsm.condition
-
- CombineCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.CombineCondition
-
- comboOperator - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- CommandLine - Class in org.apache.ctakes.temporal.eval
-
- CommandLine() - Constructor for class org.apache.ctakes.temporal.eval.CommandLine
-
- CommandLine.IntegerRanges - Class in org.apache.ctakes.temporal.eval
-
- CommandLineParserUtil - Class in org.apache.ctakes.constituency.parser.util
-
- CommandLineParserUtil() - Constructor for class org.apache.ctakes.constituency.parser.util.CommandLineParserUtil
-
- COMMENT_STRING - Static variable in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl
-
- commit - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- commit - Variable in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
- commitConnection() - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
Makes all changes made since the previous commit/rollback permanent and
releases any database locks currently held by this Connection object.
- compare(Annotation, Annotation) - Method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier.AnnotLocationComparator
-
- compare(Token, Token) - Method in class org.apache.ctakes.core.nlp.tokenizer.OffsetComparator
-
- compare(RelationExtractorAnnotator.IdentifiedAnnotationPair, RelationExtractorAnnotator.IdentifiedAnnotationPair) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.IdentifiedAnnotationPairComparator
-
- compare(Markable, Markable) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.MarkableConfidenceComparator
-
- compare(RelationExtractorAnnotator.IdentifiedAnnotationPair, RelationExtractorAnnotator.IdentifiedAnnotationPair) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.MarkablePairConfidenceComparator
-
- compare(Markable, Markable) - Method in class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator.MarkableDepheadPairComparator
-
- compare(Annotation, Annotation) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.AnnotationComparator
-
- compare(Span, Span) - Method in class org.apache.ctakes.coreference.eval.helpers.SpanOffsetComparator
-
- compare(Annotation, Annotation) - Method in class org.apache.ctakes.coreference.util.AnnotOffsetComparator
-
- compare(MetaDataHit, MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.MetaDataHitComparator
-
Implementation
- compare(LookupToken, LookupToken) - Method in enum org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator
-
- compare(PipeBitInfo, PipeBitInfo) - Method in enum org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoComparator
- compare(File, File) - Method in class org.apache.ctakes.temporal.duration.EventDurationDistribution.FileSizeComparator
-
- Compare - Class in org.apache.ctakes.utils.xcas_comparison
-
This class illustrates the basic usage of this tool.
- Compare() - Constructor for class org.apache.ctakes.utils.xcas_comparison.Compare
-
- compare(FeatureRank, FeatureRank) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank.FeatureRankAsc
-
- compare(FeatureRank, FeatureRank) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank.FeatureRankDesc
-
- CompareFeatureStructures - Class in org.apache.ctakes.temporal.data.analysis
-
- CompareFeatureStructures() - Constructor for class org.apache.ctakes.temporal.data.analysis.CompareFeatureStructures
-
- compareTo(AssertionEvaluation.HashableAnnotation) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation
-
- compareTo(RelationExtractorEvaluation.HashableArguments) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- compareTo(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Determines the order of this and the specified XcasAnnotation.
- compareTo(ConceptPair) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
compare concept 1, then concept 2
- compareTo(NegexAnnotator.NegexToken) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- compile(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- compile(String, int) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- ComplicatesDisrupts - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ComplicatesDisrupts - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ComplicatesDisrupts - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ComplicatesDisrupts - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ComplicatesDisrupts() - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
Never called.
- ComplicatesDisrupts(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
Internal - constructor used by generator
- ComplicatesDisrupts(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
- ComplicatesDisrupts_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ComplicatesDisrupts_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ComplicatesDisrupts_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ComplicatesDisrupts_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ComplicatesDisrupts_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type
-
initialize variables to correspond with Cas Type and Features
- ComplicatesDisruptsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ComplicatesDisruptsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ComplicatesDisruptsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ComplicatesDisruptsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ComplicatesDisruptsTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
Never called.
- ComplicatesDisruptsTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
Internal - constructor used by generator
- ComplicatesDisruptsTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
- ComplicatesDisruptsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ComplicatesDisruptsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ComplicatesDisruptsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ComplicatesDisruptsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ComplicatesDisruptsTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- compress(StringBuffer) - Static method in class org.apache.ctakes.preprocessor.Utility
-
remove leading and trailing whitespace from each line
- computeCosineSimilarity(List<Double>, List<Double>) - Method in class org.apache.ctakes.relationextractor.ae.features.EmbeddingFeatureExtractor
-
Compute cosine similarity between two vectors.
- computeCosineSimilarity(WordVector, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationEmbeddingFeatureExtractor
-
Compute cosine similarity between two vectors.
- computeCosineSimilarity(List<Double>, List<Double>) - Method in class org.apache.ctakes.temporal.ae.feature.RelationEmbeddingFeatureExtractor
-
- computeCosineSimilarity(WordVector, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticEmbeddingFeatureExtractor
-
Compute cosine similarity between two vectors.
- computeCosineSimilarity(List<Double>, List<Double>) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticEmbeddingFeatureExtractor
-
- computeCosineSimilarity(WordVector, WordVector) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticETEmbeddingFeatureExtractor
-
Compute cosine similarity between two vectors.
- computeCosineSimilarity(List<Double>, List<Double>) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticETEmbeddingFeatureExtractor
-
- computeFlow(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CorefEvalFlowController
-
- Concept - Class in org.apache.ctakes.assertion.medfacts.types
-
Updated by JCasGen Mon Apr 24 21:42:35 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-assertion/target/jcasgen/typesystem.xml
- Concept() - Constructor for class org.apache.ctakes.assertion.medfacts.types.Concept
-
Never called.
- Concept(int, TOP_Type) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Concept
-
Internal - constructor used by generator
- Concept(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Concept
-
- Concept(JCas, int, int) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Concept
-
- Concept - Interface in org.apache.ctakes.dictionary.lookup2.concept
-
- Concept - Class in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 11/20/13
- Concept() - Constructor for class org.apache.ctakes.gui.dictionary.umls.Concept
-
- Concept_Type - Class in org.apache.ctakes.assertion.medfacts.types
-
Updated by JCasGen Mon Apr 24 21:42:35 EDT 2017
- Concept_Type(JCas, Type) - Constructor for class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
initialize variables to correspond with Cas Type and Features
- ConceptAnnotation - Class in org.apache.ctakes.assertion.stub
-
- ConceptAnnotation() - Constructor for class org.apache.ctakes.assertion.stub.ConceptAnnotation
-
- ConceptConverterAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts
-
- ConceptConverterAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
-
- conceptDao - Variable in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- ConceptDao - Interface in org.apache.ctakes.ytex.kernel.dao
-
create/retrieve concept graphs.
- conceptDao - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- ConceptDaoImpl - Class in org.apache.ctakes.ytex.kernel.dao
-
- ConceptDaoImpl() - Constructor for class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- ConceptFactory - Interface in org.apache.ctakes.dictionary.lookup2.concept
-
Term Attribute Repository used to lookup term attributes by the cui of the term
Author: SPF
Affiliation: CHIP-NLP
Date: 11/20/13
- ConceptFirstWord - Class in org.apache.ctakes.ytex.web.search
-
Mapped to V_UMLS_FWORD_LOOKUP
This table does not have a primary key, so we can't map it with hibernate.
- ConceptFirstWord() - Constructor for class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- ConceptFirstWordRowMapper() - Constructor for class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl.ConceptFirstWordRowMapper
-
- ConceptGraph - Class in org.apache.ctakes.ytex.kernel.model
-
A directed graph that spans a subset of the UMLS connecting concepts with
IS-A links.
- ConceptGraph() - Constructor for class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- ConceptInfo - Class in org.apache.ctakes.ytex.kernel.metric
-
we run into out of memory errors when preloading the intrinsic ic for large
concept graphs.
- ConceptInfo() - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- ConceptInfo(String, int, double, double) - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- ConceptLookup - Class in org.apache.ctakes.assertion.medfacts
-
- ConceptLookup() - Constructor for class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- ConceptLookupBean - Class in org.apache.ctakes.ytex.web.search
-
JSF Backing Bean for semanticSearch.jspx.
- ConceptLookupBean() - Constructor for class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- ConceptMapFactory - Class in org.apache.ctakes.gui.dictionary.umls
-
- ConceptPair - Class in org.apache.ctakes.ytex.kernel.metric
-
pair of concepts.
- ConceptPair(String, String) - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- ConceptPair() - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- ConceptPairSimilarity - Class in org.apache.ctakes.ytex.kernel.metric
-
- ConceptPairSimilarity() - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- ConceptSearchService - Interface in org.apache.ctakes.ytex.web.search
-
Dao to get Concepts corresponding to the given text
- ConceptSearchServiceImpl - Class in org.apache.ctakes.ytex.web.search
-
- ConceptSearchServiceImpl() - Constructor for class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- ConceptSearchServiceImpl.ConceptFirstWordRowMapper - Class in org.apache.ctakes.ytex.web.search
-
- ConceptSimilarityRestService - Interface in org.apache.ctakes.ytex.ws
-
- ConceptSimilarityService - Interface in org.apache.ctakes.ytex.kernel.metric
-
- ConceptSimilarityService.SimilarityMetricEnum - Enum in org.apache.ctakes.ytex.kernel.metric
-
- ConceptSimilarityServiceImpl - Class in org.apache.ctakes.ytex.kernel.metric
-
compute concept similarity
- ConceptSimilarityServiceImpl() - Constructor for class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- ConceptSimilarityWebService - Interface in org.apache.ctakes.ytex.ws
-
- ConceptSimilarityWebServiceImpl - Class in org.apache.ctakes.ytex.ws
-
- ConceptSimilarityWebServiceImpl() - Constructor for class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- ConceptType - Class in org.apache.ctakes.assertion.stub
-
- ConceptType() - Constructor for class org.apache.ctakes.assertion.stub.ConceptType
-
- ConcRel - Class in org.apache.ctakes.ytex.kernel.model
-
- ConcRel(String, int) - Constructor for class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- ConditionalCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- ConditionalCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- ConditionalModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
Never called.
- ConditionalModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
Internal - constructor used by generator
- ConditionalModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
- ConditionalModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
- ConditionalModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Conditional modifier refers to mentions which could exist under certain circumstances.
- ConditionalModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
-
initialize variables to correspond with Cas Type and Features
- confidence - Variable in class org.apache.ctakes.drugner.DrugMention
-
- ConfidenceScoreElement - Class in org.apache.ctakes.drugner.elements
-
- ConfidenceScoreElement() - Constructor for class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
-
- ConfidenceScoreElement(double, int, int) - Constructor for class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
-
- ConfidenceScoreToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- ConfidenceScoreToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.ConfidenceScoreToken
-
- ConfigParameterConstants - Class in org.apache.ctakes.core.config
-
- configurationParameters - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- CONFIRMED_STATUS - Static variable in class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
-
- confusions() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
Returns the ConfusionMatrix tabulating reference outcomes matched to predicted
outcomes.
- CONJP - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- CONJP - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- CONJP - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- CONJP - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- CONJP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.CONJP
-
Never called.
- CONJP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.CONJP
-
Internal - constructor used by generator
- CONJP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.CONJP
-
- CONJP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.CONJP
-
- CONJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- CONJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- CONJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- CONJP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A phrase-level conjunction
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- CONJP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.CONJP_Type
-
initialize variables to correspond with Cas Type and Features
- ConjunctionRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ConjunctionRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.ConjunctionRelationFeaturesExtractor
-
- ConllDependencyNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode() - Constructor for class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
Never called.
- ConllDependencyNode(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
Internal - constructor used by generator
- ConllDependencyNode(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
- ConllDependencyNode(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
- ConllDependencyNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.
- ConllDependencyNode_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
initialize variables to correspond with Cas Type and Features
- ConnType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for connType complex type.
- ConnType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.ConnType
-
- ConsecutiveSentencesEventEventRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- ConsecutiveSentencesEventEventRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- ConsecutiveSentencesEventTimeRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- ConsecutiveSentencesEventTimeRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- Const - Interface in org.apache.ctakes.smokingstatus
-
Constants used by the SmokingStatus project.
- CONST - Class in org.apache.ctakes.typesystem.type.constants
-
Contains a set of constants for feature values.
- CONST() - Constructor for class org.apache.ctakes.typesystem.type.constants.CONST
-
- Const - Class in org.apache.ctakes.utils.xcas_comparison
-
- Const() - Constructor for class org.apache.ctakes.utils.xcas_comparison.Const
-
- constant - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
- constant - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
- Constants - Class in org.apache.ctakes.relationextractor.data
-
Various global settings.
- Constants() - Constructor for class org.apache.ctakes.relationextractor.data.Constants
-
- ConstituencyBasedTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- ConstituencyBasedTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- ConstituencyParser - Class in org.apache.ctakes.constituency.parser.ae
-
- ConstituencyParser() - Constructor for class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- ConstraintConstructor - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
-
- ConstraintConstructor() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- ConstraintConstructor(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- ConstraintConstructorFindContainedBy - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
-
- ConstraintConstructorFindContainedBy() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
-
- ConstraintConstructorFindContainedBy(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
-
- ConstraintConstructorFindContainedWithin - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
-
- ConstraintConstructorFindContainedWithin() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
-
- ConstraintConstructorFindContainedWithin(JCas) - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
-
- construct2DTokenArray(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- constructConstraintByBeginEnd(int, int, ConstraintFactory, FeaturePath, FeaturePath) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- constructConstraintByBeginEnd(int, int, ConstraintFactory, FeaturePath, FeaturePath) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
-
- constructConstraintByBeginEnd(int, int, ConstraintFactory, FeaturePath, FeaturePath) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
-
- constructContainedByConstraint(int, int, ConstraintFactory, FeaturePath, FeaturePath) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedBy
-
- constructContainedByConstraint(int, int, ConstraintFactory, FeaturePath, FeaturePath) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructorFindContainedWithin
-
- constructRel(List<ConcRel>) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
reconstruct the relationships to other ConcRel objects
- consumeHit(JCas, Annotation, int, ContextHit) - Method in interface org.apache.ctakes.necontexts.ContextHitConsumer
-
Implementation determines how context data is stored to the CAS.
- consumeHit(JCas, Annotation, int, ContextHit) - Method in class org.apache.ctakes.necontexts.ContextHitConsumerAdapter
-
- consumeHit(JCas, Annotation, int, ContextHit) - Method in class org.apache.ctakes.necontexts.NamedEntityContextHitConsumer
-
- consumeHit(JCas, Annotation, int, ContextHit) - Method in class org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
-
- consumeHit(JCas, Annotation, int, ContextHit) - Method in class org.apache.ctakes.necontexts.status.StatusContextHitConsumer
-
- consumeHits(JCas, Iterator) - Method in class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- consumeHits(JCas, Iterator) - Method in class org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl
-
- consumeHits(JCas, Iterator<LookupHit>) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupConsumer
-
Consumes the hits produced by the LookupAnnotator.
- consumeHits(JCas, Iterator<LookupHit>) - Method in class org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl
-
Consumes the hits produced by the LookupAnnotator.
- consumeHits(JCas, Iterator<LookupHit>) - Method in class org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl
-
Consumes the hits produced by the LookupAnnotator.
- consumeHits(JCas, Iterator<LookupHit>) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl
-
Consumes the hits produced by the LookupAnnotator.
- consumeHits(JCas, RareWordDictionary, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.AbstractTermConsumer
- consumeHits(JCas, RareWordDictionary, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.SemanticCleanupTermConsumer
-
Refine a collection of dictionary terms to only contain the most specific variations:
"colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap.
- consumeHits(JCas, RareWordDictionary, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in interface org.apache.ctakes.dictionary.lookup2.consumer.TermConsumer
-
- consumeHits(JCas, Iterator) - Method in class org.apache.ctakes.smokingstatus.lookup.ae.NonSmokerNamedEntityLookupConsumerImpl
-
- consumeHits(JCas, Iterator) - Method in class org.apache.ctakes.smokingstatus.lookup.ae.SmokerNamedEntityLookupConsumerImpl
-
- consumeHits(JCas, Iterator) - Method in class org.apache.ctakes.smokingstatus.lookup.ae.UnknownSmokerNamedEntityLookupConsumerImpl
-
- ConsumeNamedEntityRecordModel - Class in org.apache.ctakes.drugner.cc
-
UIMA annotator that preps the CAS for extraction into DB2.
- ConsumeNamedEntityRecordModel() - Constructor for class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- consumeTypeIdHits(JCas, String, int, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.DefaultTermConsumer
- consumeTypeIdHits(JCas, String, int, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.PrecisionTermConsumer
-
Only uses the largest spans for the type
- consumeTypeIdHits(JCas, String, int, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.SemanticCleanupTermConsumer
- consumeTypeIdHits(JCas, String, int, CollectionMap<TextSpan, Long, ? extends Collection<Long>>, CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Method in interface org.apache.ctakes.dictionary.lookup2.consumer.TermConsumer
-
- containedTokens(int, int) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator
-
- contains(SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- contains(SimpleTree, SimpleTree, boolean) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- contains(String) - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl
-
Deprecated.
- contains(String) - Method in interface org.apache.ctakes.dictionary.lookup.Dictionary
-
Determines whether the Dictionary contains the specified input text.
- contains(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.filter.MetaDataPostLookupFilterImpl
-
- contains(MetaDataHit) - Method in interface org.apache.ctakes.dictionary.lookup.filter.PostLookupFilter
-
- contains(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl
-
- contains(String) - Method in interface org.apache.ctakes.dictionary.lookup.filter.PreLookupFilter
-
- contains(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl
-
- contains(String) - Method in class org.apache.ctakes.dictionary.lookup.filter.StringPreLookupFilterImpl
- contains(String) - Method in class org.apache.ctakes.dictionary.lookup.jdbc.JdbcDictionaryImpl
-
Determines whether the Dictionary contains the specified input text.
- contains(String) - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl
-
Determines whether the Dictionary contains the specified input text.
- contains(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl
-
Determines whether the Dictionary contains the specified input text.
- contains(int, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Returns 1 if 1 contains 2
Returns 2 if 2 contains 1
Returns 0 otherwise
- contains(TlinkType) - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- containsDepFrag(SimpleTree, SimpleTree, boolean) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- containsDepFragIgnoreCase(SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- containsIgnoreCase(SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- containsKey(Object) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- containsKey(Object) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- containsKey(Object) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- containsKey(Object) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- containsKey(Object) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- containsKey(String) - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- ContainsSetTextValueCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Finds numeric values w/in tokens containing mixed text (integers contained in a string).
- ContainsSetTextValueCondition(Set, boolean) - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition
-
Constructor
- containsValue(K, V) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
check the collection map for a key and value combination
- containsValue(Object) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- containsValue(K, V) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
check the collection map for a key and value combination
- containsValue(K, V) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
check the collection map for a key and value combination
- containsValue(Object) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- containsValue(K, V) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
check the collection map for a key and value combination
- containsValue(Object) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- containsValue(K, V) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
check the collection map for a key and value combination
- containsValue(Object) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- containsValue(K, V) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
check the collection map for a key and value combination
- containsValue(Object) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- contentWords(Annotation) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- contentWords(int, int) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator
-
- CONTEXT_ANALYZER_CLASS_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"ContextAnalyzerClass" is a required, single, string parameter that
specifies the context analyzer class that determines if a "hit" is found
within a processed scope.
- CONTEXT_ANNOTATION_CLASS_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"ContextAnnotationClass" is a required, single, string parameter that
specifies the annotation type of the context annotations (often "tokens")
that make up the context relative to a focus annotation within a scope
that is being examined.
- CONTEXT_HIT_CONSUMER_CLASS_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"ContextHitConsumerClass" is a required, single, string parameter that
specifies the context hit consumer class that will process context hits
that are found.
- ContextAnalyzer - Interface in org.apache.ctakes.necontexts
-
A context analyzer analyzes a set of annotations that make up a context and
produces context hits which are consumed by context hit consumers.
- contextAnalyzer - Variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
- ContextAnalyzerAdapter - Class in org.apache.ctakes.necontexts
-
- ContextAnalyzerAdapter() - Constructor for class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
-
- ContextAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
Never called.
- ContextAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
Internal - constructor used by generator
- ContextAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
- ContextAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
- ContextAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Contextual information of an entity.
- ContextAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- ContextAnnotator - Class in org.apache.ctakes.necontexts
-
The context annotator iterates through focus annotations and analyzes the
surrounding context of each.
- ContextAnnotator() - Constructor for class org.apache.ctakes.necontexts.ContextAnnotator
-
- contextConsumer - Variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
- ContextDependentTokenizerAnnotator - Class in org.apache.ctakes.contexttokenizer.ae
-
Finds tokens based on context.
- ContextDependentTokenizerAnnotator() - Constructor for class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
-
- contextFeatureExtractor - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- contextFeatureExtractors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- contextFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- contextFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- contextFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- ContextHit - Class in org.apache.ctakes.necontexts
-
Object represents a hit relating to a focus annotation.
- ContextHit(int, int) - Constructor for class org.apache.ctakes.necontexts.ContextHit
-
- ContextHitConsumer - Interface in org.apache.ctakes.necontexts
-
A context hit consumer is called by the context annotator when a context hit
is returned by its context analyzer.
- ContextHitConsumerAdapter - Class in org.apache.ctakes.necontexts
-
- ContextHitConsumerAdapter() - Constructor for class org.apache.ctakes.necontexts.ContextHitConsumerAdapter
-
- ContextualModalityAnnotator - Class in org.apache.ctakes.temporal.ae
-
- ContextualModalityAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- ContextWordWindowExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- ContextWordWindowExtractor(String) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.ContextWordWindowExtractor
-
- contingencyTable - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- ContinuousBag - Class in org.apache.ctakes.coreference.extractors
-
- ContinuousBag(File, CleartkExtractor.Context...) - Constructor for class org.apache.ctakes.coreference.extractors.ContinuousBag
-
- ContinuousBag.Surrounding - Class in org.apache.ctakes.coreference.extractors
-
- ContinuousTextExtractor - Class in org.apache.ctakes.core.cleartk
-
- ContinuousTextExtractor(String) - Constructor for class org.apache.ctakes.core.cleartk.ContinuousTextExtractor
-
- ContinuousTextExtractor(String, ContinuousTextExtractor.OovStrategy) - Constructor for class org.apache.ctakes.core.cleartk.ContinuousTextExtractor
-
- ContinuousTextExtractor - Class in org.apache.ctakes.coreference.extractors
-
- ContinuousTextExtractor(String) - Constructor for class org.apache.ctakes.coreference.extractors.ContinuousTextExtractor
-
- ContinuousTextExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ContinuousTextExtractor(String) - Constructor for class org.apache.ctakes.temporal.ae.feature.ContinuousTextExtractor
-
- ContinuousTextExtractor.OovStrategy - Enum in org.apache.ctakes.core.cleartk
-
- ContractionResult - Class in org.apache.ctakes.core.nlp.tokenizer
-
- ContractionResult() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
-
- ContractionsPTB - Class in org.apache.ctakes.core.nlp.tokenizer
-
- ContractionsPTB() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
-
- ContractionToken - Interface in org.apache.ctakes.core.fsm.token
-
- ContractionToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
Never called.
- ContractionToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
Internal - constructor used by generator
- ContractionToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
- ContractionToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
- ContractionToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
- ContractionToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type
-
initialize variables to correspond with Cas Type and Features
- ContractionTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- ContractionTokenAdapter(ContractionToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.ContractionTokenAdapter
-
- Contraindicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- Contraindicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- Contraindicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- Contraindicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- Contraindicates() - Constructor for class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
Never called.
- Contraindicates(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
Internal - constructor used by generator
- Contraindicates(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
- Contraindicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- Contraindicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- Contraindicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- Contraindicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- Contraindicates_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Contraindicates_Type
-
initialize variables to correspond with Cas Type and Features
- ContraindicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ContraindicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ContraindicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ContraindicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ContraindicatesTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
Never called.
- ContraindicatesTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
Internal - constructor used by generator
- ContraindicatesTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
- ContraindicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ContraindicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ContraindicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ContraindicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ContraindicatesTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- convert(List<? extends FeatureExtractor1<T>>, FeatureFunction) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.ExtractorListFeatureFunctionConverter
-
- convert(int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- convert(int) - Method in class org.apache.ctakes.assertion.stub.CharacterOffsetToLineTokenConverterDefaultImpl
-
- convert(LineAndTokenPosition) - Method in class org.apache.ctakes.assertion.stub.LineTokenToCharacterOffsetConverter
-
- convert(Token, JCas, int) - Static method in class org.apache.ctakes.core.ae.TokenConverter
-
Converts from Java Tokenizer object into a JCas object.
- convert(BaseToken) - Static method in class org.apache.ctakes.core.ae.TokenConverter
-
Convert from a JCas object into Java Tokenizer object.
- convert(FSIterator) - Static method in class org.apache.ctakes.coreference.util.FSIteratorToList
-
- convert(JCas, DEPTree, Sentence, List<BaseToken>) - Static method in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility
-
- convert(TreebankNode, JCas, TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- convert(Class, Object) - Method in class org.apache.ctakes.ytex.uima.mapper.ISO8601Converter
-
- convert2DTokenArrayToText(ArrayList<ArrayList<String>>) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- ConvertAndCompare - Class in org.apache.ctakes.utils.xcas_comparison
-
- ConvertAndCompare() - Constructor for class org.apache.ctakes.utils.xcas_comparison.ConvertAndCompare
-
- convertCharacterOffsetToLineToken(int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- convertCharacterOffsetToLineToken(int) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
delegate to converter to determine offset.
- convertCharacterOffsetToLineToken(int) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- converter2 - Variable in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- convertFromTextToNum(String) - Method in class org.apache.ctakes.drugner.DrugMention
-
- Converti2b2AnnotationsToCTAKES - Class in org.apache.ctakes.assertion.medfacts
-
- Converti2b2AnnotationsToCTAKES() - Constructor for class org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES
-
- convertToChangeStatus(String) - Method in class org.apache.ctakes.drugner.DrugMention
-
- convertToDebugOutput(String, T) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- convertToDistribution(String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Take a time unit and return a probability distribution
in which p(this time unit) = 1 and all others are zero.
- convertTokens(List<Token>) - Static method in class org.apache.ctakes.core.fsm.token.adapter.TokenConverter
-
- convertToString(JCas, BaseToken) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter
-
If token is an event, add event markers.
- ConvertXMIAssertionsToi2b2Format - Class in org.apache.ctakes.assertion.medfacts
-
- ConvertXMIAssertionsToi2b2Format() - Constructor for class org.apache.ctakes.assertion.medfacts.ConvertXMIAssertionsToi2b2Format
-
- ConvolutionKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
Apply the delegate kernel to the children of the given nodes.
- ConvolutionKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- CoordinateFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- CoordinateFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.CoordinateFeaturesExtractor
-
- CopyAnnotator - Class in org.apache.ctakes.core.ae
-
Utility annotator that copy's data from an existing JCas object into a new
JCas object.
- CopyAnnotator() - Constructor for class org.apache.ctakes.core.ae.CopyAnnotator
-
- CopyCoreferenceRelations() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyCoreferenceRelations
-
- CopyDocumentTextToGoldView() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.CopyDocumentTextToGoldView
-
- CopyDrugAnnotator - Class in org.apache.ctakes.drugner.ae
-
Utility annotator that copy's data from an existing JCas object into a new
JCas object.
- CopyDrugAnnotator() - Constructor for class org.apache.ctakes.drugner.ae.CopyDrugAnnotator
-
- CopyFromGold() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
-
- CopyFromSystem() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromSystem
-
- CopyGoldMarkablesInChains() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyGoldMarkablesInChains
-
- CopyHeadEventDocTimeRel2GoldEvent() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.CopyHeadEventDocTimeRel2GoldEvent
-
- copyLvgFiles(String) - Static method in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Copy to under /tmp/ (or some other specified directory) the files needed for EventAnnotatorTest and anyone else
using UIMAfit to create a pipeline.
- CopyNPChunksToLookupWindowAnnotations() - Constructor for class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.CopyNPChunksToLookupWindowAnnotations
-
- CopyNPChunksToLookupWindowAnnotations() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations
-
- CopyPropertiesToTemporalEventAnnotator() - Constructor for class org.apache.ctakes.temporal.pipelines.FullTemporalExtractionPipeline.CopyPropertiesToTemporalEventAnnotator
-
- COREF_CLUSTER_DOWNSAMPLE - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- COREF_PAIRS_DOWNSAMPLE - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- COREF_THRESHOLD - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- CorefConsts - Class in org.apache.ctakes.coreference.util
-
- CorefConsts() - Constructor for class org.apache.ctakes.coreference.util.CorefConsts
-
- CoreferenceAnnotatorFactory - Class in org.apache.ctakes.coreference.factory
-
- CoreferenceAnnotatorFactory() - Constructor for class org.apache.ctakes.coreference.factory.CoreferenceAnnotatorFactory
-
- CoreferenceChainScoringOutput - Class in org.apache.ctakes.coreference.ae
-
- CoreferenceChainScoringOutput() - Constructor for class org.apache.ctakes.coreference.ae.CoreferenceChainScoringOutput
-
- CoreferenceRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- CoreferenceRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- CoreferenceRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- CoreferenceRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- CoreferenceRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
Never called.
- CoreferenceRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
Internal - constructor used by generator
- CoreferenceRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
- CoreferenceRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- CoreferenceRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- CoreferenceRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- CoreferenceRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A coreference pair, with antecedent as arg1 and anaphor as arg2
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- CoreferenceRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type
-
initialize variables to correspond with Cas Type and Features
- CorefEvalFlowController() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CorefEvalFlowController
-
- CorefSyntaxFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- CorefSyntaxFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.CorefSyntaxFeatureExtractor
-
- corpus - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- CORPUS_WO_GOLD_STD_TO_RUN_THROUGH_CTAKES - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- CorpusKernelEvaluator - Interface in org.apache.ctakes.ytex.kernel.evaluator
-
- CorpusKernelEvaluatorImpl - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- CorpusKernelEvaluatorImpl() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- CorpusKernelEvaluatorImpl.InstanceIDRowMapper - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- CorpusKernelEvaluatorImpl.SliceEvaluator - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- correctArgOrder(Collection<BinaryTextRelation>, Collection<BinaryTextRelation>) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- countAnnotationsInSpan(JCas, int, int, int, int[]) - Static method in class org.apache.ctakes.core.util.FSUtil
-
- countAnnotationsInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil
-
returns the number of annotations of specified type in the
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.CountCloseRelation
-
- CountCloseRelation() - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.CountCloseRelation
-
- countCorrectOutcomes() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countCorrectOutcomes(OUTCOME_TYPE) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countDepFrags(SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- CounterMap<K> - Class in org.apache.ctakes.utils.struct
-
- CounterMap() - Constructor for class org.apache.ctakes.utils.struct.CounterMap
-
- CounterTreeMap<K> - Class in org.apache.ctakes.utils.struct
-
- CounterTreeMap() - Constructor for class org.apache.ctakes.utils.struct.CounterTreeMap
-
- countFalseNegatives(OUTCOME_TYPE...) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countFalsePositives(OUTCOME_TYPE...) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countFrags(SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- countInterval(Collection<? extends Annotation>, int, int) - Static method in class org.apache.ctakes.coreference.util.AnnotationCounter
-
- countPoint(Collection<? extends Annotation>, int, int) - Static method in class org.apache.ctakes.coreference.util.AnnotationCounter
-
- countPredictedOutcomes() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countPredictedOutcomes(OUTCOME_TYPE) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countReferenceOutcomes() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countReferenceOutcomes(OUTCOME_TYPE) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countTrueNegatives(OUTCOME_TYPE...) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- countTruePositives(OUTCOME_TYPE...) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- Course - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Course
-
Never called.
- Course(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Course
-
Internal - constructor used by generator
- Course(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Course
-
- Course_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indication of progress or decline of a condition.
- Course_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Course_Type
-
initialize variables to correspond with Cas Type and Features
- CourseModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
Never called.
- CourseModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
Internal - constructor used by generator
- CourseModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
- CourseModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
- CourseModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indication of progress or decline of a condition.
- CourseModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type
-
initialize variables to correspond with Cas Type and Features
- CoveredTextToValuesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- CoveredTextToValuesExtractor(String, Map<String, double[]>) - Constructor for class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor
-
- CR - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan
-
- CR - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- CREAM - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- createAnaphoricityVector(Markable, JCas) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
-
- createAnnotations(JCas) - Method in class org.apache.ctakes.constituency.parser.MaxentParserWrapper
-
- createAnnotations(JCas) - Method in interface org.apache.ctakes.constituency.parser.ParserWrapper
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- createAnnotatorDescription(String[], int) - Static method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.chunker.ae.Chunker
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.chunker.ae.Chunker
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterFit
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterFit
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.coreference.ae.MarkableSalienceAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.coreference.ae.PersonChainAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.dictionary.lookup2.ae.OverlapJCasTermAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.OverlapJCasTermAnnotator
-
- createAnnotatorDescription(String, int, int) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.OverlapJCasTermAnnotator
-
- createAnnotatorDescription(boolean, boolean) - Static method in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.lvg.ae.ThreadSafeLvg
-
Necessary if the lvg.properties need to be copied into a temporary file.
- createAnnotatorDescription() - Static method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.postagger.POSTagger
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.postagger.POSTagger
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.F1BaselineEventTimeRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.PrecisionBaselineEventTimeRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventEventRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventTimeRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.TimidBaselineEventTimeRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.NEPredicateEventAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.NEPredicateEventAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- createAnnotatorDescription(String) - Static method in class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- createAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- CreateAssertionDescriptor - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- CreateAssertionDescriptor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
-
- CreateAssertionLuceneIndexFromDelimitedFile - Class in org.apache.ctakes.dictionary.assertion
-
Driver for populating a Lucene Index with assertion cue phrases, so that the
tokenization of the dictionary entries matches the tokenization that will be
done to clinical text during pipeline processing.
- CreateAssertionLuceneIndexFromDelimitedFile(TokenizerPTB) - Constructor for class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
Constructor
- CreateAssertionZonerDescriptors - Class in org.mitre.medfacts.uima
-
- CreateAssertionZonerDescriptors() - Constructor for class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- createBlob(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
I2b2 wants annotation begin and end offsets plus the covered text
- createBsvLine(Collection<String>) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- createBsvLine(String...) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- createChunk(JCas, int, int, String) - Method in interface org.apache.ctakes.chunker.ae.ChunkCreator
-
- createChunk(JCas, int, int, String) - Method in class org.apache.ctakes.chunker.ae.DefaultChunkCreator
-
- createChunk(JCas, int, int, String) - Method in class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator
-
- createCodeInsertSql(String) - Static method in class org.apache.ctakes.gui.dictionary.util.JdbcUtil
-
- createCollection() - Method in interface org.apache.ctakes.core.util.collection.CollectionCreator
-
- createCollection(int) - Method in interface org.apache.ctakes.core.util.collection.CollectionCreator
-
- createColumnCsvLoadType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createColumnXmlLoadType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createConcept(Long) - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory
- createConcept(Long) - Method in interface org.apache.ctakes.dictionary.lookup2.concept.ConceptFactory
-
- createConcept(Long) - Method in class org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
- createConcept(Long) - Method in class org.apache.ctakes.dictionary.lookup2.concept.MemConceptFactory
- createConcept(Long) - Method in class org.apache.ctakes.dictionary.lookup2.concept.UmlsJdbcConceptFactory
- createConceptGraph(String, String, String, boolean, Set<String>) - Method in interface org.apache.ctakes.ytex.kernel.dao.ConceptDao
-
create the concept graph with specified name using specified query.
- createConceptGraph(String, String, String, boolean, Set<String>) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- createConcepts(Collection<Long>) - Method in class org.apache.ctakes.dictionary.lookup2.concept.AbstractConceptFactory
-
Only creates non-empty concepts; Cuis for which additional info does not exist don't create concepts
- createConcepts(Collection<Long>) - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory
- createConcepts(Collection<Long>) - Method in interface org.apache.ctakes.dictionary.lookup2.concept.ConceptFactory
-
- createConcepts(Collection<Long>) - Method in class org.apache.ctakes.dictionary.lookup2.concept.UmlsJdbcConceptFactory
- createConceptsForTuis(String, Collection<Tui>) - Static method in class org.apache.ctakes.gui.dictionary.umls.MrstyParser
-
- createConn(ConnType) - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createConnType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createContextAnnot(JCas, Annotation, int, ContextHit) - Method in class org.apache.ctakes.necontexts.NamedEntityContextHitConsumer
-
- createCsvLine(Collection<String>) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- createCsvLine(String...) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- createCsvLoadType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createCsvLoadTypeColumn() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createCustomDictionaryLookupDescription(String) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DictionaryLookupFactory
-
- createCustomOverlapDictionaryLookupDescription(String) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DictionaryLookupFactory
-
- createDatabase(Connection) - Static method in class org.apache.ctakes.gui.dictionary.util.HsqlUtil
-
- createDatabaseConnection(String, String, String) - Static method in class org.apache.ctakes.gui.dictionary.util.JdbcUtil
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, float) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<Boolean>>, File) - Static method in class org.apache.ctakes.coreference.ae.MarkableSalienceAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, float) - Static method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<?>>, File, float) - Static method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- createDataWriterDescription(Class<?>, File, float, float, float) - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- createDataWriterDescription(Class<CrfSuiteStringOutcomeDataWriter>, File, double, boolean) - Static method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double, boolean) - Static method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File, double) - Static method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- createDataWriterDescription(Class<?>, File, float, float) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- createDataWriterDescription(Class<? extends DataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- createDefaultDictionaryLookupDescription() - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DictionaryLookupFactory
-
- createDescription(String, boolean) - Static method in class org.apache.ctakes.core.ae.StartFinishLogger
-
- createDescription(Class<? extends AnalysisComponent>, Object...) - Method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
- createDirectories() - Method in class org.apache.ctakes.relationextractor.data.Splitter
-
- createEngine(String, boolean) - Static method in class org.apache.ctakes.core.ae.StartFinishLogger
-
This method should be avoided.
- createEngine(String) - Static method in class org.apache.ctakes.core.cc.FileTreeXmiWriter
-
- createEngine(Class<? extends AnalysisComponent>, Object...) - Method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
This method should be avoided.
- createEngineDescription(String) - Static method in class org.apache.ctakes.core.ae.BsvRegexSectionizer
-
- createEngineDescription(String) - Static method in class org.apache.ctakes.core.ae.ListAnnotator
-
- createEngineDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- createEngineDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- createEngineDescription(String) - Static method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- createEngineDescription(File) - Static method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- createEngineDescription(String) - Static method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- createEngineDescription(File) - Static method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- createEnsembleDescription(String, String) - Static method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- createEnsembleDescription(File, String) - Static method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- createEnsembleDescription(String, String) - Static method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- createEnsembleDescription(File, String) - Static method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- createEnsembleDescription(String, String) - Static method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- createEnsembleDescription(File, String) - Static method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- createEnsembleDescription(File, String) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createFeatureSelection(double) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- createFeatureSelectionURI(File) - Static method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- createFilteredIterator(int, int, Type) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- createInitialConceptMap(String, Collection<String>, Collection<Tui>) - Static method in class org.apache.ctakes.gui.dictionary.umls.ConceptMapFactory
-
- createInstance(String) - Static method in class org.apache.ctakes.utils.struct.MapFactory
-
- createJdbcType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createListCreator() - Static method in class org.apache.ctakes.core.util.collection.CollectionCreatorFactory
-
- createLoad(LoadType) - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createLoadType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createLoadTypeCsv() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createLoadTypeXml() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createLoggedDescription(Class<? extends AnalysisComponent>, Object...) - Static method in class org.apache.ctakes.core.ae.StartFinishLogger
-
- createLoggedDescription(AnalysisEngineDescription) - Static method in class org.apache.ctakes.core.ae.StartFinishLogger
-
- createLoggedDescription(Class<? extends AnalysisComponent>, Object...) - Method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
- createLoggedDescription(AnalysisEngineDescription) - Static method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
- createLoggedEngine(Class<? extends AnalysisComponent>, Object...) - Static method in class org.apache.ctakes.core.ae.StartFinishLogger
-
This method should be avoided.
- createLoggedEngine(Class<? extends AnalysisComponent>, Object...) - Method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
This method should be avoided.
- createLoggerPanel(Level...) - Static method in class org.apache.ctakes.gui.component.LoggerPanel
-
- createLookupHitMap(Iterator<LookupHit>) - Static method in class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl
-
- createNameEditor() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- createNameEditor() - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- createNameEditor() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- createOutdir(String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- createOverlapDictionaryLookupDescription() - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DictionaryLookupFactory
-
- createParameterDefaultsMap(Class<?>) - Static method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterMapper
-
- createParameterInfoPanel() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- createParameterInfoPanel() - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- createParameterInfoPanel() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- createParameterTypeMap(Class<?>) - Static method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterMapper
-
- createPreciseTerms(CollectionMap<TextSpan, Long, ? extends Collection<Long>>) - Static method in class org.apache.ctakes.dictionary.lookup2.consumer.PrecisionTermConsumer
-
Refine a collection of dictionary terms to only contain the most specific variations:
"colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap
- CreatePseudoGoldMarkables() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.CreatePseudoGoldMarkables
-
- createRareWordTermMap(Iterable<RareWordTermMapCreator.CuiTerm>) - Static method in class org.apache.ctakes.dictionary.lookup2.dictionary.RareWordTermMapCreator
-
- createReader(String) - Static method in class org.apache.ctakes.core.cr.FileTreeReader
-
Convenience method to create a reader with an input directory
- createReader(String) - Static method in class org.apache.ctakes.gui.dictionary.util.FileUtil
-
- createReciprocals() - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- createRelation(JCas, CollectionTextRelation, IdentifiedAnnotation, String, Double) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
Create a UIMA relation type based on arguments and the relation label.
- createRelation(JCas, CollectionTextRelation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
Create a UIMA relation type based on arguments and the relation label.
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.CausesBringsAboutRelationExtractorAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.ManagesTreatsRelationExtractorAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.ManifestationOfRelationExtractorAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
Create a UIMA relation type based on arguments and the relation label.
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.CrossSentenceTemporalRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.EventEventCNNAnnotator
-
Dima's way of getting lables
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
Create a UIMA relation type based on arguments and the relation label.
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.ae.WithinSentenceBeforeRelationAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPosBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPositionBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndBIOBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndPosBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePosBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePositionBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
- createRelation(JCas, IdentifiedAnnotation, IdentifiedAnnotation, String, double) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- createRowInsertSql(String, AbstractJdbcWriter.FieldInfo...) - Static method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
- createRowInsertSql(String, Enum...) - Static method in class org.apache.ctakes.gui.dictionary.util.JdbcUtil
-
- createRowInsertSql(String, String...) - Static method in class org.apache.ctakes.gui.dictionary.util.JdbcUtil
-
- createScoringAnnotatorDescription(String) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- createSetCreator() - Static method in class org.apache.ctakes.core.util.collection.CollectionCreatorFactory
-
- createTagDictionary(BufferedReader, boolean) - Static method in class org.apache.ctakes.postagger.TagDictionaryCreator
-
Create a tag dictionary from a POS corpus in OpenNLP format.
- createTestDescriptor() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
-
- createToolTip() - Method in class org.apache.ctakes.gui.component.SmoothTipList
-
- createToolTip() - Method in class org.apache.ctakes.gui.component.SmoothTipTable
-
- createTrainDescriptor() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
-
- createUmlsConcepts(JCas, String, String, Concept) - Method in class org.apache.ctakes.dictionary.lookup2.consumer.DefaultUmlsConceptCreator
- createUmlsConcepts(JCas, String, String, Concept) - Method in interface org.apache.ctakes.dictionary.lookup2.consumer.UmlsConceptCreator
-
- createValuesEditor() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- createValuesEditor() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserParameterInfoPanel
-
- createXmlLoadType() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createXmlLoadTypeColumn() - Method in class org.apache.ctakes.jdl.schema.xdl.ObjectFactory
-
- createZonerAggregateDescriptor() - Method in class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- CreateZonerDescriptor - Class in org.mitre.medfacts.uima
-
- CreateZonerDescriptor() - Constructor for class org.mitre.medfacts.uima.CreateZonerDescriptor
-
- createZonerMayoDescriptor() - Method in class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- createZonerNormalDescriptor() - Method in class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- CRFTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- CRFTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- CRLF - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan
-
- CRLF - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- crListToString(List<ConcRel>) - Static method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- CrossSentenceTemporalRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- CrossSentenceTemporalRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.CrossSentenceTemporalRelationAnnotator
-
- CrossValidateAttributeModels - Class in org.apache.ctakes.assertion.train
-
- CrossValidateAttributeModels() - Constructor for class org.apache.ctakes.assertion.train.CrossValidateAttributeModels
-
- CrossValidateChi2GridSearch - Class in org.apache.ctakes.assertion.train
-
- CrossValidateChi2GridSearch() - Constructor for class org.apache.ctakes.assertion.train.CrossValidateChi2GridSearch
-
- CrossValidationFold - Class in org.apache.ctakes.ytex.kernel.model
-
- CrossValidationFold() - Constructor for class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- CrossValidationFold(String, String, String, Integer, Integer, Set<CrossValidationFoldInstance>) - Constructor for class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- CrossValidationFoldInstance - Class in org.apache.ctakes.ytex.kernel.model
-
- CrossValidationFoldInstance(long, boolean) - Constructor for class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- CrossValidationFoldInstance() - Constructor for class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- crossValidationFolds - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- csv - Variable in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
- Csv() - Constructor for class org.apache.ctakes.jdl.schema.xdl.LoadType.Csv
-
- CsvLoader - Class in org.apache.ctakes.jdl.data.loader
-
Loader of CSV file.
- CsvLoader(CsvLoadType, File) - Constructor for class org.apache.ctakes.jdl.data.loader.CsvLoader
-
- CsvLoadType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for csvLoadType complex type.
- CsvLoadType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- CsvLoadType.Column - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for anonymous complex type.
- CTAKES_ANAT - Static variable in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
-
- CTAKES_CTS_TYPE_SYSTEM_DESCRIPTION - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionComponents
-
- CTAKES_DRUG - Static variable in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
-
- CtakesFileNamer - Class in org.apache.ctakes.core.util
-
This is a very simple implementation of XWriterFileNamer that generates file names based on a
prefix string and a incrementing counter.
- CtakesFileNamer() - Constructor for class org.apache.ctakes.core.util.CtakesFileNamer
-
- ctakesTokensToOpennlpTokens(int, String, FSArray) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- CTX_HIT_KEY_STATUS_TYPE - Static variable in class org.apache.ctakes.necontexts.status.StatusContextAnalyzer
-
- CTX_KEY_WINDOW_ANNOTATIONS - Static variable in class org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl
-
Key value for context map.
- CUE_MODEL_PARAM - Static variable in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- CUE_PHRASE_CATEGORY_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- CUE_PHRASE_CATEGORY_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- CUE_PHRASE_FAMILY_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- CUE_PHRASE_FAMILY_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- CUE_PHRASE_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- CUE_PHRASE_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- CUE_PHRASE_FIRST_WORD_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- CUE_PHRASE_FIRST_WORD_FIELD_NAME - Static variable in class org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl
-
- cuePhraseInWindowExtractor - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- CueWordTest - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- CueWordTest() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest
-
- CueWordTest2 - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- CueWordTest2() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest2
-
- CuiCodeUtil - Enum in org.apache.ctakes.dictionary.lookup2.util
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/5/2014
- CuiCodeUtil - Enum in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/5/2014
- CuiCollector - Enum in org.apache.ctakes.core.pipeline
-
Stores a collection of Cuis from a run, along with their associated Document Ids
- CuiCollector.CuiCollectorEngine - Class in org.apache.ctakes.core.pipeline
-
Analysis Engine that stores collections of cuis by document id in the CuiCollector
- CuiCollectorEngine() - Constructor for class org.apache.ctakes.core.pipeline.CuiCollector.CuiCollectorEngine
-
- CuiCountFileWriter - Class in org.apache.ctakes.core.cc
-
Writes a file with two bar-separated columns, the first is the cui, the second the number of cuis in the document.
- CuiCountFileWriter() - Constructor for class org.apache.ctakes.core.cc.CuiCountFileWriter
-
- cuiPattern - Static variable in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
pattern to match cuis and parse out their number
- CuiTerm(String, String) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.RareWordTermMapCreator.CuiTerm
-
- CuiTuiTerm(String, String, String) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory.CuiTuiTerm
-
- cullExtensions() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- CytoscapeHelper - Interface in org.apache.ctakes.ytex.kernel
-
- CytoscapeHelperImpl - Class in org.apache.ctakes.ytex.kernel
-
- CytoscapeHelperImpl() - Constructor for class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- DAILY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- DATA_DIR - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- dataInsert(JdlConnection) - Method in class org.apache.ctakes.jdl.data.loader.CsvLoader
-
- dataInsert(JdlConnection) - Method in class org.apache.ctakes.jdl.data.loader.Loader
-
- dataInsert(JdlConnection) - Method in class org.apache.ctakes.jdl.data.loader.XmlLoader
-
- dataSource - Variable in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- dataWriterClass - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- Date - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
-
Never called.
- Date(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
-
Internal - constructor used by generator
- Date(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date
-
- Date - Class in org.apache.ctakes.ytex.uima.types
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- Date() - Constructor for class org.apache.ctakes.ytex.uima.types.Date
-
Never called.
- Date(int, TOP_Type) - Constructor for class org.apache.ctakes.ytex.uima.types.Date
-
Internal - constructor used by generator
- Date(JCas) - Constructor for class org.apache.ctakes.ytex.uima.types.Date
-
- Date(JCas, int, int) - Constructor for class org.apache.ctakes.ytex.uima.types.Date
-
- DATE_FORMAT - Static variable in class org.apache.ctakes.ytex.uima.annotators.DateAnnotator
-
- Date_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for dates, namely with day, month, and year.
- Date_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
initialize variables to correspond with Cas Type and Features
- Date_Type - Class in org.apache.ctakes.ytex.uima.types
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- Date_Type(JCas, Type) - Constructor for class org.apache.ctakes.ytex.uima.types.Date_Type
-
initialize variables to correspond with Cas Type and Features
- DateAndMeasurementExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- DateAndMeasurementExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DateAndMeasurementExtractor
-
- DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- DateAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DateAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
Never called.
- DateAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
Internal - constructor used by generator
- DateAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
- DateAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
- DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- DateAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.DateAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DateAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DateAnnotator - Class in org.apache.ctakes.ytex.uima.annotators
-
The cTAKES date doesn't actually parse the date.
- DateAnnotator() - Constructor for class org.apache.ctakes.ytex.uima.annotators.DateAnnotator
-
- DateAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DateAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
Never called.
- DateAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
Internal - constructor used by generator
- DateAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
- DateAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
- DateAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DateAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
-
initialize variables to correspond with Cas Type and Features
- DateFSM - Class in org.apache.ctakes.core.fsm.machine
-
Uses one or more finite state machines to detect dates in the given input of
tokens.
- DateFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.DateFSM
-
Constructor
- DateParser - Class in org.apache.ctakes.core.util
-
- DateParser() - Constructor for class org.apache.ctakes.core.util.DateParser
-
- DateToken - Class in org.apache.ctakes.core.fsm.output
-
- DateToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.DateToken
-
- DayNightWordCondition - Class in org.apache.ctakes.core.fsm.condition
-
Handles case of A.M.
- DayNightWordCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DayNightWordCondition
-
- DBAnnotationViewerDialog - Class in org.apache.ctakes.ytex.tools.docanalyzer
-
Dialog that loads analyzed documents stored in XMI or XCAS format and allows them to be viewed
using the Java-based CAS viewer or a web browser, in either an HTML/Javascript format or in the
inline XML format.
- DBAnnotationViewerDialog(JFrame, String, PrefsMediator, File, String, TypeSystem, String[], String, boolean, boolean, boolean, CAS) - Constructor for class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Create an AnnotationViewer Dialog
- DBAnnotationViewerDialog(JFrame, String, PrefsMediator, File, String, TypeSystem, String[], boolean, CAS) - Constructor for class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
- DBAnnotationViewerMain - Class in org.apache.ctakes.ytex.tools
-
Main Annotation Viewer GUI.
- DBAnnotationViewerMain() - Constructor for class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Constructor.
- DBCollectionReader - Class in org.apache.ctakes.ytex.uima
-
Read documents from db.
- DBCollectionReader() - Constructor for class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- DBConsumer - Class in org.apache.ctakes.ytex.uima.annotators
-
Store the document text, cas, and annotations in the database.
- DBConsumer() - Constructor for class org.apache.ctakes.ytex.uima.annotators.DBConsumer
-
- DBPing - Class in org.apache.ctakes.ytex.tools
-
- DBPing() - Constructor for class org.apache.ctakes.ytex.tools.DBPing
-
- DBUtil - Class in org.apache.ctakes.ytex.dao
-
Oracle differs from sql server & mysql in handling of empty string.
- DBUtil() - Constructor for class org.apache.ctakes.ytex.dao.DBUtil
-
- debugAnnotationsInCas(JCas, IdentifiedAnnotation, String) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- DebugConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
LookupConsumer implementation that outputs debug info to the log about each LookupHit.
- DebugConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl
-
- DecimalCondition - Class in org.apache.ctakes.core.fsm.condition
-
- DecimalCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalCondition
-
- DecimalRangeCondition - Class in org.apache.ctakes.core.fsm.condition
-
- DecimalRangeCondition(double, double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition
-
- DecimalStrengthAnnotation - Class in org.apache.ctakes.drugner.type
-
The decimal portion of dosages stength determination for the Drug NER profile.
- DecimalStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
Never called.
- DecimalStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
Internal - constructor used by generator
- DecimalStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
- DecimalStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
- DecimalStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
The decimal portion of dosages stength determination for the Drug NER profile.
- DecimalStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DecimalStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect decimal fractions in the given
input of tokens.
- DecimalStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM
-
Constructor
- DecimalStrengthStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a FractionToken.
- DecimalStrengthStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition
-
- DecimalStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util
-
- DecimalStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.DecimalStrengthToken
-
- DecimalToken - Interface in org.apache.ctakes.core.fsm.token
-
- DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- DecimalTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter
-
- DecimalTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
- DecimalTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter
-
- DecimalValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- DecimalValueCondition(double) - Constructor for class org.apache.ctakes.core.fsm.condition.DecimalValueCondition
-
- decorateNominalInstanceWords(Map<Long, SortedMap<String, String>>, Map<String, SortedSet<String>>) - Method in interface org.apache.ctakes.ytex.kernel.BagOfWordsDecorator
-
- decorateNominalInstanceWords(Map<Long, SortedMap<String, String>>, Map<String, SortedSet<String>>) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixArffDecorator
-
Deprecated.
do nothing
- decorateNumericInstanceWords(Map<Long, SortedMap<String, Double>>, SortedSet<String>) - Method in interface org.apache.ctakes.ytex.kernel.BagOfWordsDecorator
-
- decorateNumericInstanceWords(Map<Long, SortedMap<String, Double>>, SortedSet<String>) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixArffDecorator
-
Deprecated.
- DECREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- DECREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- DECREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- deepCopy(Object) - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- deepCopy(Object) - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- deepCopy() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
copy values from other annoMappingInfo
- deepCopy() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- DeepPheAnaforaXMLReader - Class in org.apache.ctakes.temporal.ae
-
- DeepPheAnaforaXMLReader() - Constructor for class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- DEFAULT_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- DEFAULT_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- DEFAULT_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DEFAULT_DICT_DESC_PATH - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- DEFAULT_DOWNSAMPLE - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- DEFAULT_DOWNSAMPLE - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- DEFAULT_DOWNSAMPLE - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DEFAULT_DTD_FILE - Static variable in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- DEFAULT_EXCLUSION_TAGS - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- DEFAULT_HYPHEN_FILE - Static variable in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- DEFAULT_LAMBDA - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DEFAULT_LOOKUP_WINDOW - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- DEFAULT_MINIMUM_SPAN - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- DEFAULT_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- DEFAULT_NAME - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.BrownClusterFeatureFunction
-
- DEFAULT_PAR_SIM - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- DEFAULT_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- DEFAULT_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- DEFAULT_SCORE_ALL - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- DEFAULT_SECTION_FILE_NAME - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- DEFAULT_SENT_DIST - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- DEFAULT_SIM - Static variable in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistSemExtractor
-
- DEFAULT_SIM - Static variable in class org.apache.ctakes.coreference.ae.features.DistSemFeatureExtractor
-
- DEFAULT_SRL_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- DEFAULT_SVM_C - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DEFAULT_SVM_G - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DEFAULT_TK - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- DefaultBaseItemCell - Class in org.apache.ctakes.core.cc.pretty.cell
-
- DefaultBaseItemCell(TextSpan, String, String) - Constructor for class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
-
- DefaultChunkCreator - Class in org.apache.ctakes.chunker.ae
-
This chunker creator simply creates annotations of type edu.mayo.bmi.chunker.type.Chunk and
sets the chunkType feature of the annotation to the passed in parameter chunkType.
- DefaultChunkCreator() - Constructor for class org.apache.ctakes.chunker.ae.DefaultChunkCreator
-
- DefaultCollectionMap<K,V,T extends Collection<V>> - Class in org.apache.ctakes.core.util.collection
-
- DefaultCollectionMap(Map<K, T>, CollectionCreator<V, T>) - Constructor for class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
- DefaultConcept - Class in org.apache.ctakes.dictionary.lookup2.concept
-
Author: SPF
Affiliation: CHIP-NLP
Date: 11/20/13
- DefaultConcept(String) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
-
- DefaultConcept(String, String) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
-
- DefaultConcept(String, String, CollectionMap<String, String, ? extends Collection<String>>) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
-
- DefaultDictionarySpec - Class in org.apache.ctakes.dictionary.lookup2.util
- DefaultDictionarySpec(Map<String, String>, Map<String, String>, Map<String, RareWordDictionary>, Map<String, ConceptFactory>, TermConsumer) - Constructor for class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
-
- defaultExclusionWords - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- defaultIndexPath - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex
-
- DefaultItemRow - Class in org.apache.ctakes.core.cc.pretty.row
-
- DefaultItemRow() - Constructor for class org.apache.ctakes.core.cc.pretty.row.DefaultItemRow
-
- DefaultJCasTermAnnotator - Class in org.apache.ctakes.dictionary.lookup2.ae
-
A direct string match using phrase permutations
Author: SPF
Affiliation: CHIP-NLP
Date: 11/19/13
- DefaultJCasTermAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator
-
- defaultMaxHits - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex
-
- DefaultParameterHolder - Class in org.apache.ctakes.gui.pipeline.bit.parameter
-
- DefaultParameterHolder(Class<?>) - Constructor for class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
-
- defaultParams - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- defaultSearchField - Static variable in class org.apache.ctakes.utils.wiki.WikiIndex
-
- DefaultTermConsumer - Class in org.apache.ctakes.dictionary.lookup2.consumer
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/9/14
- DefaultTermConsumer(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.DefaultTermConsumer
-
- DefaultTermConsumer(UimaContext, Properties, UmlsConceptCreator) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.DefaultTermConsumer
-
- DefaultTextSpan - Class in org.apache.ctakes.core.cc.pretty.textspan
-
Holder for begin and end text span offsets within a containing sentence
- DefaultTextSpan(AnnotationFS, int) - Constructor for class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
-
- DefaultTextSpan(int, int) - Constructor for class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
-
- DefaultTextSpan - Class in org.apache.ctakes.dictionary.lookup2.textspan
-
A useful key for hash collections based upon start and end indices.
- DefaultTextSpan(int, int) - Constructor for class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
-
Given span indices should be ordered start < end, but it is not an absolute requirement.
- defaultTreebankMap - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- DefaultUmlsConceptCreator - Class in org.apache.ctakes.dictionary.lookup2.consumer
-
- DefaultUmlsConceptCreator() - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.DefaultUmlsConceptCreator
-
- DefaultUmlsItemCell - Class in org.apache.ctakes.core.cc.pretty.cell
-
Item Cell that holds information about an umls entity
- DefaultUmlsItemCell(TextSpan, int, Map<String, Collection<String>>) - Constructor for class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
-
- DefaultUserBit - Class in org.apache.ctakes.gui.pipeline.bit.user
-
- DefaultUserBit(PipeBitInfo, Class<?>) - Constructor for class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
-
- DegreeOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
Never called.
- DegreeOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
Internal - constructor used by generator
- DegreeOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
- DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between an attribute and an entity/event.
- DegreeOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOf_Type
-
initialize variables to correspond with Cas Type and Features
- DegreeOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
- DegreeOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
-
- DegreeOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- DegreeOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DegreeOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- DegreeOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DegreeOfTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
Never called.
- DegreeOfTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
Internal - constructor used by generator
- DegreeOfTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
- DegreeOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- DegreeOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DegreeOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- DegreeOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DegreeOfTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- deleteAuiFirstWord() - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
- deleteAuiFirstWord() - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- deleteCrossValidationFoldByName(String, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- deleteCrossValidationFoldByName(String, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- deleteFeatureEvaluation(String, String, String, String, Integer, Double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- deleteFeatureEvaluation(String, String, String, String, Integer, Double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- deleteFeatureEvaluationByNameAndType(String, String, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- deleteFeatureEvaluationByNameAndType(String, String, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- Delim - Class in org.apache.ctakes.dependency.parser.util
-
- Delim() - Constructor for class org.apache.ctakes.dependency.parser.util.Delim
-
- delimiter - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- DEM - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- DemMarkable - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- DemMarkable() - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
-
Never called.
- DemMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
-
Internal - constructor used by generator
- DemMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
-
- DemMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable
-
- DemMarkable_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- DemMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.DemMarkable_Type
-
initialize variables to correspond with Cas Type and Features
- Demographics - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics() - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
-
Never called.
- Demographics(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
-
Internal - constructor used by generator
- Demographics(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics
-
- Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Demographic information about the patient in a clinical document.
- Demographics_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
initialize variables to correspond with Cas Type and Features
- DEP_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- DEPENDENCY_FILE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
"DependencyFile" is a required, single, string parameter that specifies the
location of a data file that contains dependency data in it.
- DependencyFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- DependencyFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DependencyFeatureExtractor
-
- DependencyFileCollectionReader - Class in org.apache.ctakes.dependency.parser.cr
-
This collection reader reads in dependency tree training/test data in a tab-
delimited format.
- DependencyFileCollectionReader() - Constructor for class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
- DependencyNodeWriter - Class in org.apache.ctakes.dependency.parser
-
CasConsumer that writes a JCas (the current view) to an xml file
- DependencyNodeWriter() - Constructor for class org.apache.ctakes.dependency.parser.DependencyNodeWriter
-
- DependencyParseUtils - Class in org.apache.ctakes.relationextractor.ae.features
-
- DependencyParseUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
- DependencyParseUtils - Class in org.apache.ctakes.temporal.ae.feature
-
This is a slightly modified version of the same class from relation extraction.
- DependencyParseUtils() - Constructor for class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
- DependencyPath - Class in org.apache.ctakes.dependency.parser.util
-
- DependencyPath() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- DependencyPathFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- DependencyPathFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor
-
- DependencyPathFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- DependencyPathFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DependencyPathFeaturesExtractor
-
- DependencyPathRegexpFeatureExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- DependencyPathRegexpFeatureExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.DependencyPathRegexpFeatureExtractor
-
- DependencyRegex - Class in org.apache.ctakes.dependency.parser.util
-
- DependencyRegex(String, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencyRegex(DependencyPath, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencyRegex(String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencyRegex(DEPNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencyRegex(DEPNode[], int, String) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencyRegex(ConllDependencyNode[], int) - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- DependencySingleTreeExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
Given a focused annotation, get the whole sentence-level dependency tree that cover this annotation.
- DependencySingleTreeExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.DependencySingleTreeExtractor
-
- DependencyTreeFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- DependencyTreeFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor
-
- DependencyUtility - Class in org.apache.ctakes.dependency.parser.util
-
- DependencyUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- DependencyWordsFragmentExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- DependencyWordsFragmentExtractor(String, String) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.DependencyWordsFragmentExtractor
-
- DependingVerbsFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- DependingVerbsFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DependingVerbsFeatureExtractor
-
- depthMax() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- DESC_INPUTDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
- DESC_LOOKUP_XML - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
- DESC_OUTPUTDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
- DESC_PIPER - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
- DESC_SUBDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
- description() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Returns a String representation of this object, including its type, and
all attributes and references.
- destroy() - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- DeterminerRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
extract the nearby nearest time, date information for any event
- DeterminerRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DeterminerRelationFeaturesExtractor
-
- DeterministicMarkableAnnotator - Class in org.apache.ctakes.coreference.ae
-
- DeterministicMarkableAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.DeterministicMarkableAnnotator
-
- DEV_REMAINDERS - Static variable in class org.apache.ctakes.temporal.eval.THYMEData
-
- devDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- DEVLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter
-
- Diagnoses - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- Diagnoses - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- Diagnoses - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- Diagnoses - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- Diagnoses() - Constructor for class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
Never called.
- Diagnoses(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
Internal - constructor used by generator
- Diagnoses(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
- Diagnoses_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- Diagnoses_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- Diagnoses_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- Diagnoses_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- Diagnoses_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Diagnoses_Type
-
initialize variables to correspond with Cas Type and Features
- DiagnosesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- DiagnosesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DiagnosesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- DiagnosesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DiagnosesTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
Never called.
- DiagnosesTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
Internal - constructor used by generator
- DiagnosesTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
- DiagnosesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- DiagnosesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DiagnosesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- DiagnosesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DiagnosesTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- Dictionary - Interface in org.apache.ctakes.dictionary.lookup
-
- DICTIONARY_DESCRIPTOR_KEY - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- DictionaryCreator - Class in org.apache.ctakes.gui.dictionary
-
- DictionaryDescriptorParser - Class in org.apache.ctakes.dictionary.lookup2.dictionary
-
Parses the XML descriptor indicated by the
externalResource for
DictionaryDescriptorFile
in the XML descriptor for the Rare Word Term Lookup Annotator
DefaultJCasTermAnnotator
- DictionaryEngine - Class in org.apache.ctakes.dictionary.lookup
-
The engine adds additional functionality to executing a dictionary.
- DictionaryEngine(Dictionary, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
- DictionaryException - Exception in org.apache.ctakes.dictionary.lookup
-
- DictionaryException(Throwable) - Constructor for exception org.apache.ctakes.dictionary.lookup.DictionaryException
-
- DictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae
-
UIMA annotator that identified entities based on lookup.
- DictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
-
- DictionaryLookupFactory - Class in org.apache.ctakes.dictionary.lookup2.ae
-
- DictionarySpec - Interface in org.apache.ctakes.dictionary.lookup2.util
-
- differ(int, int) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
-
- dims - Variable in class org.apache.ctakes.core.cleartk.FollowingWithPadding
-
- dims - Variable in class org.apache.ctakes.core.cleartk.PrecedingWithPadding
-
- dir - Variable in class org.apache.ctakes.temporal.keras.ScriptStringFeatureDataWriter
-
- dir - Variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeDataWriter
-
- DirectLookupInitializerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
- DirectLookupInitializerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
- DirectoryFileFilter() - Constructor for class org.apache.ctakes.ytex.kernel.FileUtil.DirectoryFileFilter
-
- DirectPassThroughImpl - Class in org.apache.ctakes.dictionary.lookup.algorithms
-
Each individual LookupToken is referenced against a Dictionary.
- DirectPassThroughImpl(DictionaryEngine, PhraseBuilder) - Constructor for class org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl
-
Constructor
- DisablerPane - Class in org.apache.ctakes.gui.component
-
A Panel that makes everything on the GUI "disabled".
- disambiguate(List<Set<String>>, int, Set<String>, int, ConceptSimilarityService.SimilarityMetricEnum, Map<String, Double>) - Method in interface org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguator
-
- disambiguate(List<Set<String>>, int, Set<String>, int, ConceptSimilarityService.SimilarityMetricEnum, Map<String, Double>, boolean) - Method in interface org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguator
-
Disambiguate a named entity.
- disambiguate(List<Set<String>>, int, Set<String>, int, ConceptSimilarityService.SimilarityMetricEnum, Map<String, Double>) - Method in class org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguatorImpl
-
- disambiguate(List<Set<String>>, int, Set<String>, int, ConceptSimilarityService.SimilarityMetricEnum, Map<String, Double>, boolean) - Method in class org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguatorImpl
-
- disambiguate(JCas, List<IdentifiedAnnotation>) - Method in class org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
-
- disassemble(Object) - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- disassemble(Object) - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder() - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
Never called.
- DiseaseDisorder(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
Internal - constructor used by generator
- DiseaseDisorder(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
- DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate).
- DiseaseDisorder_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
initialize variables to correspond with Cas Type and Features
- DiseaseDisorderMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
Never called.
- DiseaseDisorderMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
Internal - constructor used by generator
- DiseaseDisorderMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
- DiseaseDisorderMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
- DiseaseDisorderMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (DiseaseDisorder) Event.
- DiseaseDisorderMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
initialize variables to correspond with Cas Type and Features
- DisjoinCondition - Class in org.apache.ctakes.core.fsm.condition
-
- DisjoinCondition(Condition, Condition) - Constructor for class org.apache.ctakes.core.fsm.condition.DisjoinCondition
-
- dispatchEvent(AWTEvent) - Method in class org.apache.ctakes.gui.action.GlobalHotKeyManager
- displayContext - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
-
- displayEntities - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
-
- displayError(String) - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Displays an error message to the user.
- displayError(Throwable) - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Displays an error message to the user.
- displayError(String) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Displays an error message to the user.
- displayError(Throwable) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Displays an error message to the user.
- distance(String, String) - Static method in class org.apache.ctakes.coreference.util.EditDistance
-
- distance(String, String, boolean) - Static method in class org.apache.ctakes.coreference.util.EditDistance
-
- DISTANCE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
- DISTANCE_ANN_TYPE - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
Annotation type that is used to count the distance.
- DistanceFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- DistanceFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.DistanceFeatureExtractor
-
- distanceFromRoot(ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- distanceFromRoot(SimpleTree) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- DistanceMetrics - Class in org.apache.ctakes.utils.distsem
-
- DistanceMetrics() - Constructor for class org.apache.ctakes.utils.distsem.DistanceMetrics
-
- DistSemFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- DistSemFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.DistSemFeatureExtractor
-
- DIVIDER_LINE_NAME - Static variable in class org.apache.ctakes.core.ae.RegexSectionizer
-
- DN_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- DN_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- DocKey - Class in org.apache.ctakes.ytex.uima.types
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DocKey() - Constructor for class org.apache.ctakes.ytex.uima.types.DocKey
-
Never called.
- DocKey(int, TOP_Type) - Constructor for class org.apache.ctakes.ytex.uima.types.DocKey
-
Internal - constructor used by generator
- DocKey(JCas) - Constructor for class org.apache.ctakes.ytex.uima.types.DocKey
-
- DocKey(JCas, int, int) - Constructor for class org.apache.ctakes.ytex.uima.types.DocKey
-
- DocKey_Type - Class in org.apache.ctakes.ytex.uima.types
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DocKey_Type(JCas, Type) - Constructor for class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
initialize variables to correspond with Cas Type and Features
- docPredImport(String, String) - Static method in class org.apache.ctakes.ytex.weka.ImportWekaResults
-
- DocTimeRelAnnotator - Class in org.apache.ctakes.temporal.ae
-
- DocTimeRelAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- DocTimeRelFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- DocTimeRelFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.DocTimeRelFeatureExtractor
-
- DocTimeRelSnippetPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.DtrRelPrinter.DocTimeRelSnippetPrinter
-
- Document - Class in org.apache.ctakes.ytex.uima.model
-
Mapped to document table.
- Document() - Constructor for class org.apache.ctakes.ytex.uima.model.Document
-
- DocumentAnnotation - Class in org.apache.ctakes.ytex.uima.model
-
Mapped to uima Annotation.
- DocumentAnnotation() - Constructor for class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- DocumentAnnotation(UimaType, Document) - Constructor for class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- DocumentClass - Class in org.apache.ctakes.ytex.uima.model
-
Mapped to document_class.
- DocumentClass() - Constructor for class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- DocumentClassification - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- DocumentClassification - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DocumentClassification - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- DocumentClassification - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DocumentClassification() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
Never called.
- DocumentClassification(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
Internal - constructor used by generator
- DocumentClassification(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
- DocumentClassification_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- DocumentClassification_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DocumentClassification_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- DocumentClassification_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DocumentClassification_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
-
initialize variables to correspond with Cas Type and Features
- DocumentDao - Interface in org.apache.ctakes.ytex.uima.dao
-
DAO interface for accessing Document objects.
- DocumentDaoImpl - Class in org.apache.ctakes.ytex.uima.dao
-
- DocumentDaoImpl() - Constructor for class org.apache.ctakes.ytex.uima.dao.DocumentDaoImpl
-
- DocumentID - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DocumentID() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
Never called.
- DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
Internal - constructor used by generator
- DocumentID(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
- DocumentID(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
- DocumentID - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- DocumentID - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- DocumentID - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- DocumentID - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- DocumentID() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
-
Never called.
- DocumentID(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
-
Internal - constructor used by generator
- DocumentID(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID
-
- DocumentID_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
-
initialize variables to correspond with Cas Type and Features
- DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- DocumentID_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- DocumentID_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
-
initialize variables to correspond with Cas Type and Features
- DocumentIDAnnotationUtil - Class in org.apache.ctakes.core.util
-
Utility class for fetching document id
- DocumentIDAnnotator() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.DocumentIDAnnotator
-
- DocumentIdPrefix - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
Never called.
- DocumentIdPrefix(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
Internal - constructor used by generator
- DocumentIdPrefix(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
- DocumentIdPrefix_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify a prefix to a document ID.
- DocumentIdPrefix_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type
-
initialize variables to correspond with Cas Type and Features
- DocumentIDPrinter() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.DocumentIDPrinter
-
- DocumentIdPrinterAnalysisEngine - Class in org.apache.ctakes.core.ae
-
- DocumentIdPrinterAnalysisEngine() - Constructor for class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine
-
- DocumentMapperService - Interface in org.apache.ctakes.ytex.uima.mapper
-
- DocumentMapperServiceImpl - Class in org.apache.ctakes.ytex.uima.mapper
-
Map document annotations to the database.
- DocumentMapperServiceImpl() - Constructor for class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- DocumentMapperServiceImpl.AnnoFSAttribute - Class in org.apache.ctakes.ytex.uima.mapper
-
holder for FeatureStruct attributes
- DocumentMapperServiceImpl.AnnoLink - Class in org.apache.ctakes.ytex.uima.mapper
-
- DocumentMapperServiceImpl.ChunkPreparedStatementSetter<T> - Interface in org.apache.ctakes.ytex.uima.mapper
-
- DocumentMetaData - Class in org.apache.ctakes.preprocessor
-
- DocumentMetaData() - Constructor for class org.apache.ctakes.preprocessor.DocumentMetaData
-
- DocumentPath - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath() - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
Never called.
- DocumentPath(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
Internal - constructor used by generator
- DocumentPath(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
- DocumentPath_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Can specify the full path to a document source.
- DocumentPath_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.DocumentPath_Type
-
initialize variables to correspond with Cas Type and Features
- DocumentResultInstanceImporter - Class in org.apache.ctakes.ytex.weka
-
- DocumentResultInstanceImporter() - Constructor for class org.apache.ctakes.ytex.weka.DocumentResultInstanceImporter
-
- documentScore - Variable in class org.apache.ctakes.utils.wiki.SearchResult
-
- DocumentSearchResult - Class in org.apache.ctakes.ytex.web.search
-
Encapsulates document search results
- DocumentSearchResult(int, String, Date, String, String, String) - Constructor for class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- DocumentSearchResult() - Constructor for class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- DocumentSearchResultMapper() - Constructor for class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl.DocumentSearchResultMapper
-
- DocumentSearchService - Interface in org.apache.ctakes.ytex.web.search
-
Service for searching documents.
- DocumentSearchServiceImpl - Class in org.apache.ctakes.ytex.web.search
-
- DocumentSearchServiceImpl() - Constructor for class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- DocumentSearchServiceImpl.DocumentSearchResultMapper - Class in org.apache.ctakes.ytex.web.search
-
- DocumentSection - Class in org.apache.ctakes.core.util
-
Class containing relevant information for
a given document section
- DocumentSection(int, int, String) - Constructor for class org.apache.ctakes.core.util.DocumentSection
-
- documentTitle - Variable in class org.apache.ctakes.utils.wiki.SearchResult
-
- DocumentViewBean - Class in org.apache.ctakes.ytex.web.search
-
JSF bean for viewing a document retrieved via semanticSearch.jspx.
- DocumentViewBean() - Constructor for class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- doesSubsume(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Checks if one annotation subsumes another
- DOMAIN_ADAPTATION_ALGORITHM - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.FedaFeatureFunction
-
- dominates(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- dominates(Annotation, Annotation) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- dominates(Annotation, Annotation) - Static method in class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterMentionPairer_ImplBase
-
- DomParser - Class in org.apache.ctakes.jdl.data.xml
-
To parse DOM.
- DomParser(String) - Constructor for class org.apache.ctakes.jdl.data.xml.DomParser
-
- DomUtil - Class in org.apache.ctakes.jdl.data.xml
-
Utility to manage DOM.
- DONOR_DEPPATH - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- DONOR_DEPTOK - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- DONOR_OR - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- DONOR_SRLARG - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- DONOR_TOKEN - Static variable in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- dosage - Variable in class org.apache.ctakes.drugner.DrugMention
-
e.g.
- DosageCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a DosageToken.
- DosageCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition
-
- DosageElement - Class in org.apache.ctakes.drugner.elements
-
- DosageElement() - Constructor for class org.apache.ctakes.drugner.elements.DosageElement
-
- DosageElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DosageElement
-
- DosagesAnnotation - Class in org.apache.ctakes.drugner.type
-
The dosage determination for the Drug NER profile.
- DosagesAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
-
Never called.
- DosagesAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
-
Internal - constructor used by generator
- DosagesAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
-
- DosagesAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation
-
- DosagesAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
The dosage determination for the Drug NER profile.
- DosagesAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DosagesAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DosagesFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect dosages in the given input
of tokens.
- DosagesFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
-
Constructor
- DosageToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- DosageToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DosageToken
-
- DoseUtil - Class in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 7/14/14
- DotLogger - Class in org.apache.ctakes.core.util
-
Dot Logger Usable in try as resource blocks
- DotLogger() - Constructor for class org.apache.ctakes.core.util.DotLogger
-
Starts the Dot Logging
- dotProd(svm_node[], svm_node[]) - Static method in class org.apache.ctakes.utils.kernel.Kernel
-
- driver - Variable in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
- DrugChangeStatusAnnotation - Class in org.apache.ctakes.drugner.type
-
The change status of dosages determination for the Drug NER profile.
- DrugChangeStatusAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
Never called.
- DrugChangeStatusAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
Internal - constructor used by generator
- DrugChangeStatusAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
- DrugChangeStatusAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
- DrugChangeStatusAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
The change status of dosages determination for the Drug NER profile.
- DrugChangeStatusAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DrugChangeStatusCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a DrugChangeStatusToken.
- DrugChangeStatusCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition
-
- DrugChangeStatusElement - Class in org.apache.ctakes.drugner.elements
-
- DrugChangeStatusElement() - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- DrugChangeStatusElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- DrugChangeStatusFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect change status data in the
given input of tokens.
- DrugChangeStatusFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
-
Constructor
- DrugChangeStatusToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- DrugChangeStatusToken(int, int, String) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- DrugLookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
-
Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-drug-ner/target/jcasgen/typesystem.xml
- DrugLookupWindowAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
Never called.
- DrugLookupWindowAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
Internal - constructor used by generator
- DrugLookupWindowAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
- DrugLookupWindowAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
- DrugLookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Similar to LookupWindowAnnotation however, these annotations are restricted to the segments/sections specified in the parameter - sectionOverrideSet - in DrugCNP2LookupWindow
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
- DrugLookupWindowAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DrugMention - Class in org.apache.ctakes.drugner
-
Contains information from a single document - is not the result of data
mining.
- DrugMention(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.DrugMention
-
- DrugMentionAnnotation - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-drug-ner/target/jcasgen/typesystem.xml
- DrugMentionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
Never called.
- DrugMentionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
Internal - constructor used by generator
- DrugMentionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
- DrugMentionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
- DrugMentionAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
- DrugMentionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DrugMentionAnnotator - Class in org.apache.ctakes.drugner.ae
-
Finds tokens based on context.
- DrugMentionAnnotator() - Constructor for class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
- drugMentionText - Variable in class org.apache.ctakes.drugner.DrugMention
-
The word(s) in the note that indicate the drug.
- DrugModel - Interface in org.apache.ctakes.drugner
-
- dtdfilepath - Variable in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- DTDloader - Class in org.apache.ctakes.preprocessor
-
Use to load DTD from classpath.
- DTDloader(InputStream) - Constructor for class org.apache.ctakes.preprocessor.DTDloader
-
- DtrRelPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard docTimeRel labels and the context
- DtrRelPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.DtrRelPrinter
-
- DtrRelPrinter.DocTimeRelSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- dumpCache() - Static method in class org.apache.ctakes.utils.wiki.ApproximateMath
-
- dumpDependencyGraph(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- dumpDependencyRelations(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
- dumpDependencyRelations(JCas, Annotation) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
- dumpSRLOutput(Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.SRLUtility
-
- duration - Variable in class org.apache.ctakes.drugner.DrugMention
-
e.g.
- DurationAnnotation - Class in org.apache.ctakes.drugner.type
-
The duration determination for the Drug NER profile.
- DurationAnnotation() - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
-
Never called.
- DurationAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
-
Internal - constructor used by generator
- DurationAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
-
- DurationAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation
-
- DurationAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
The duration determination for the Drug NER profile.
- DurationAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.DurationAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- DurationDistributionFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.duration
-
- DurationDistributionFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.duration.DurationDistributionFeatureExtractor
-
- durationDistributionPath - Static variable in class org.apache.ctakes.temporal.duration.Utils
-
- DurationElement - Class in org.apache.ctakes.drugner.elements
-
- DurationElement() - Constructor for class org.apache.ctakes.drugner.elements.DurationElement
-
- DurationElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.DurationElement
-
- DurationEventEventFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.duration
-
- DurationEventEventFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.duration.DurationEventEventFeatureExtractor
-
- DurationEventTimeFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.duration
-
Calculate probability that CONTAINS relation can exist between two arguments.
- DurationEventTimeFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.duration.DurationEventTimeFeatureExtractor
-
- DurationExpectationFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.duration
-
- DurationExpectationFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.duration.DurationExpectationFeatureExtractor
-
- DurationFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect duration data in the given
input of tokens.
- DurationFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
-
Constructor
- DurationTimeUnitFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.duration
-
Assumes all relations whose argument have no duration data have been deleted.
- DurationTimeUnitFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.duration.DurationTimeUnitFeatureExtractor
-
- DurationToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- DurationToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.DurationToken
-
- DYNAMIC_VALIDATION_FEATURE_ID - Static variable in class org.apache.ctakes.jdl.data.xml.SaxParser
-
Dynamic validation feature id
(http://apache.org/xml/features/validation/dynamic).
- EditDistance - Class in org.apache.ctakes.coreference.util
-
- EditDistance() - Constructor for class org.apache.ctakes.coreference.util.EditDistance
-
- Element - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element
-
Never called.
- Element(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element
-
Internal - constructor used by generator
- Element(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element
-
- Element_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates.
- Element_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
initialize variables to correspond with Cas Type and Features
- ElementRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
Never called.
- ElementRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
Internal - constructor used by generator
- ElementRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
- ElementRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.
- ElementRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
initialize variables to correspond with Cas Type and Features
- elevateListConcepts(JCas, TreebankNode) - Static method in class org.apache.ctakes.assertion.util.AssertionTreeUtils
-
- ELIXIR - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- EmbeddingFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Word embedding based features.
- EmbeddingFeatureExtractor(Map<String, List<Double>>) - Constructor for class org.apache.ctakes.relationextractor.ae.features.EmbeddingFeatureExtractor
-
- embeddingPath - Static variable in class org.apache.ctakes.relationextractor.data.analysis.Utils
-
- EmptyFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- EmptyFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EmptyFeaturesExtractor
-
- EMULSION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- ENABLED_FEATURES_PARAM - Static variable in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- encapsulator - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- EncoderReusingDataWriter - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- EncoderReusingDataWriter(File) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.EncoderReusingDataWriter
-
- end - Variable in class org.apache.ctakes.assertion.cr.Span
-
- end - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation
-
- end - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span
-
The offset immediately after the last character in the text span.
- end - Variable in class org.apache.ctakes.preprocessor.IntegerRange
-
- end - Variable in class org.apache.ctakes.relationextractor.knowtator.Span
-
- endDate - Variable in class org.apache.ctakes.drugner.DrugMention
-
- endDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- endElement(String, String, String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- endElement(String, String, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
- endMatch(String, String) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- endMatch(String, String) - Static method in class org.apache.ctakes.coreference.util.TextMatch
-
- endOffset - Variable in class org.apache.ctakes.preprocessor.Annotation
-
- EndOfSentenceScannerImpl - Class in org.apache.ctakes.core.sentence
-
End of Sentence scanner with more candidate end-of-sentence
characters than the default.
- EndOfSentenceScannerImpl() - Constructor for class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
-
- endRedirect() - Method in class org.apache.ctakes.gui.component.SystemOutPanel
-
Stops redirecting the standard output (or error) and returns it to its former consumer
- ENEMA - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- ENG_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NamedState
-
- enter(Object) - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState
-
- enter(Object) - Method in class org.apache.ctakes.drugner.fsm.states.util.IndentStartState
-
- Entity - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity
-
Never called.
- Entity(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity
-
Internal - constructor used by generator
- Entity(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity
-
- ENTITY_FILL - Static variable in interface org.apache.ctakes.core.cc.pretty.cell.UmlsItemCell
-
- Entity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world entity such as a body part.
- Entity_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Entity_Type
-
initialize variables to correspond with Cas Type and Features
- EntityCollector - Enum in org.apache.ctakes.core.pipeline
-
Stores a collection of simple entity information from a run, along with their associated Document Ids
- EntityCollector.Entity - Class in org.apache.ctakes.core.pipeline
-
Holds basic information from an IdentifiedAnnotation.
- EntityCollector.EntityCollectorEngine - Class in org.apache.ctakes.core.pipeline
-
Analysis Engine that stores collections of cuis by document id in the CuiCollector
- EntityCollectorEngine() - Constructor for class org.apache.ctakes.core.pipeline.EntityCollector.EntityCollectorEngine
-
- entityFeatureExtractors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- EntityMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
Never called.
- EntityMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
Internal - constructor used by generator
- EntityMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
- EntityMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
- EntityMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Entity.
- EntityMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
-
initialize variables to correspond with Cas Type and Features
- entityMentionCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- entityMentionPairCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- entityMentionPairTypes - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- EntityMentionRemover() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EntityMentionRemover
-
- EntitySpanFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Features that indicate whether both arguments are contained within an NP.
- EntitySpanFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor
-
- entityTreeExtractors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- entropy(double[]) - Static method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- entropy(Iterable<Double>) - Static method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
calculate entropy from a list/array of probabilities
- entropyX - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
the entropy of X.
- entropyXY - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
the entropy of X*Y.
- entrySet() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- entrySet() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- entrySet() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- entrySet() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- entrySet() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- EnumSetMap<K extends Enum<K>,V> - Class in org.apache.ctakes.core.util.collection
-
- EnumSetMap(Class<K>) - Constructor for class org.apache.ctakes.core.util.collection.EnumSetMap
-
- EnvironmentVariable - Class in org.apache.ctakes.utils.env
-
- EO - Static variable in interface org.apache.ctakes.temporal.utils.TimeRelationConstants
-
- EolToken - Interface in org.apache.ctakes.core.fsm.token
-
- EQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- EQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility
-
Equality expressions to aid in converting between DepNodes and CAS objects
- equalCoverage(Annotation, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Equality expressions to aid in converting between DepNodes and CAS objects
- EqualityKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- EqualityKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.EqualityKernel
-
- equals(Object) - Method in class org.apache.ctakes.assertion.cr.RelationInfo
-
- equals(Object) - Method in class org.apache.ctakes.assertion.cr.Span
-
- equals(Object) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation
-
- equals(Object) - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- equals(Object) - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- equals(Object) - Method in class org.apache.ctakes.core.cc.pretty.cell.TimexCell
- equals(Object) - Method in class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
- equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
- equals(Object) - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span
-
- equals(Object) - Method in class org.apache.ctakes.core.pipeline.EntityCollector.Entity
-
- equals(Object) - Method in class org.apache.ctakes.core.util.Pair
-
- equals(Object) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- equals(Object) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- equals(Object) - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- equals(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.AbstractBaseMetaDataHit
-
Two MetaDataHits are equal if their Meta field name/value pairs
are equal.
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl.LookupHitKey
-
- equals(MetaDataHit) - Method in class org.apache.ctakes.dictionary.lookup.BaseMetaDataHitImpl
-
Deprecated.
Two MetaDataHits are equal if their Meta field name/value pairs
are equal.
- equals(MetaDataHit) - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
-
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
Override default equals method.
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory.CuiTuiTerm
-
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.RareWordTermMapCreator.CuiTerm
-
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.term.SpannedRareWordTerm
-
Override default equals method.
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
- equals(Object) - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
Two lookup tokens are equal iff the spans are equal.
- equals(Object) - Method in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- equals(Object) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- equals(Object) - Method in class org.apache.ctakes.relationextractor.knowtator.Span
-
- equals(Object) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Determines whether the specified object equals to this one.
- equals(Object) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Checks whether the specified object has the same set of annotations.
- equals(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- equals(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.OrderedPair
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.Pair
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- equals(Object) - Method in class org.apache.ctakes.ytex.kernel.tree.NodeKey
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator.NegSpan
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- equals(Object) - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- equals(Object) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- equals(Object) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- equals(Object) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- equivCls(int[]) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
-
- es1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- es2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- escapeCat(String) - Static method in class org.apache.ctakes.utils.tree.SimpleTree
-
- escapePunct(String) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- eval(Object, Object) - Method in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel
-
- eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.Kernel
-
- eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.PolyKernel
-
- eval(Object, Object) - Method in class org.apache.ctakes.utils.kernel.RBFKernel
-
- evalOnly - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- evalOutputDir - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- evaluate(SHARPXMI.EvaluationOptions, ParameterSettings, List<ParameterSettings>, Function<ParameterSettings, T>) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.AttributeProductKernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
c1 and c2 must be Nodes.
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.EqualityKernel
-
- evaluate(Object, Object) - Method in interface org.apache.ctakes.ytex.kernel.evaluator.Kernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NamedEntityNegationKernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NodeAttributeKernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
override CacheKernel - don't bother caching evaluation if the concepts
are not in the conceptFilter, or if they are identical.
- evaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- evaluateAttributes(String, String, String, Instances, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
evaluate attributes, store in db
- evaluateAttributesFromFile(String, String, String, String) - Method in interface org.apache.ctakes.ytex.weka.WekaAttributeEvaluator
-
evaluate attributes in an arff file, save rank in db
- evaluateAttributesFromFile(String, String, String, String) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- evaluateAttributesFromProps(String, String, String, Properties) - Method in interface org.apache.ctakes.ytex.weka.WekaAttributeEvaluator
-
create instances from properties file, evaluate, save in db
- evaluateAttributesFromProps(String, String, String, Properties) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- evaluateCorpus(String) - Method in interface org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator
-
- evaluateCorpus(ImputedFeatureEvaluatorImpl.Parameters) - Method in interface org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator
-
- evaluateCorpus(ImputedFeatureEvaluatorImpl.Parameters) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- evaluateCorpus(String) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- evaluateCorpusInfoContent(String, String, String, String) - Method in interface org.apache.ctakes.ytex.kernel.InfoContentEvaluator
-
calculate information content for all concepts
- evaluateCorpusInfoContent(String, String, String, String) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- evaluateIntrinsicInfoContent(Properties) - Method in interface org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluator
-
- evaluateIntrinsicInfoContent(String, String, ConceptGraph) - Method in interface org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluator
-
- evaluateIntrinsicInfoContent(Properties) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- evaluateIntrinsicInfoContent(String, String, ConceptGraph) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- evaluateKernelOnCorpus() - Method in interface org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluator
-
- evaluateKernelOnCorpus(Map<Long, Node>, int, int, boolean) - Method in interface org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluator
-
- evaluateKernelOnCorpus(Map<Long, Node>, int, boolean) - Method in interface org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluator
-
- evaluateKernelOnCorpus() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- evaluateKernelOnCorpus(Map<Long, Node>, int, boolean) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- evaluateKernelOnCorpus(Map<Long, Node>, int, int, boolean) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- Evaluation_ImplBase(File) - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI.Evaluation_ImplBase
-
- Evaluation_ImplBase<STATISTICS_TYPE> - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File) - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- Evaluation_ImplBase.CopyFromGold - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.CopyFromSystem - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.EntityMentionRemover - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.EventMentionRemover - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.Options - Interface in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.PittHeaderAnnotator - Class in org.apache.ctakes.temporal.eval
-
Grabs the document time from the header
- Evaluation_ImplBase.RemoveEnclosedLookupWindows - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.Subcorpus - Enum in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.TimexAnnotationCorrector - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.WriteAnaforaXML - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.WriteI2B2XML - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.XMIReader - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.XMIWriter - Class in org.apache.ctakes.temporal.eval
-
- Evaluation_ImplBase.XMLFormat - Enum in org.apache.ctakes.temporal.eval
-
- evaluationLogFilePath - Static variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- EvaluationOfAnnotationSpans_ImplBase - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfAnnotationSpans_ImplBase(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, Class<? extends Annotation>) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- EvaluationOfAnnotationSpans_ImplBase(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, Class<? extends Annotation>) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- EvaluationOfBothEEAndETRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- EvaluationOfBothEEAndETRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.RemoveNonTLINKRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfBothEEAndETRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKEventProperties - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKEventProperties(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties
-
- EvaluationOfClearTKEventProperties.ClearEventProperties - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKEventSpans - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKEventSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- EvaluationOfClearTKRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfClearTKRelations
-
- EvaluationOfClearTKTimeSpans - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfClearTKTimeSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- EvaluationOfEventCoreference - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, EvaluationOfEventTimeRelations.ParameterSettings, String, String) - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- EvaluationOfEventCoreference.AnnotationComparator - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.CopyCoreferenceRelations - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.CopyGoldMarkablesInChains - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.CorefEvalFlowController - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.DocumentIDPrinter - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.EVAL_SYSTEM - Enum in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.ParagraphAnnotator - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.ParagraphVectorAnnotator - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.RelationPropagator - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.RemoveAllCoreferenceAnnotations - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventCoreference.RemovePersonMarkables - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfEventDocTimeRelDeepPhe - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventDocTimeRelDeepPhe(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- EvaluationOfEventDocTimeRelDeepPhe.ClearEventProperties - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventDocTimeRelDeepPhe.CopyHeadEventDocTimeRel2GoldEvent - Class in org.apache.ctakes.temporal.eval
-
copy covered event's DocTimeRel to the gold event
remove non-gold eventMentions
- EvaluationOfEventDocTimeRelDeepPhe.KeepEventMentionsCoveredByGoldMentions - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventDocTimeRelDeepPhe.ReplaceCTakesMentionsWithGoldMentions - Class in org.apache.ctakes.temporal.eval
-
Annotator that removes cTAKES Mentions and Modifiers from the system view,
and copies over the manually annotated Mentions and Modifiers from the gold
view.
- EvaluationOfEventEventCRFRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- EvaluationOfEventEventCRFRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.AddEEPotentialRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.RemoveLongDistanceEERelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventCRFRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- EvaluationOfEventEventDeepPheRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.AddEEPotentialRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.CountCloseRelation - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.RemoveLongDistanceEERelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventDeepPheRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- EvaluationOfEventEventHybridModelsRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.RemoveLongDistanceEERelations - Class in org.apache.ctakes.temporal.eval
-
public static class CountCloseRelation extends JCasAnnotator_ImplBase {
private String systemViewName = CAS.NAME_DEFAULT_SOFA;
- EvaluationOfEventEventHybridModelsRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventHybridModelsRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventRelations
-
- EvaluationOfEventEventThymeRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- EvaluationOfEventEventThymeRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.AddEEPotentialRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.CountCloseRelation - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventEventThymeRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventProperties - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventProperties(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- EvaluationOfEventProperties.ClearEventProperties - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventSpans - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, float, float, float) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- EvaluationOfEventTimeDeepPheRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- EvaluationOfEventTimeDeepPheRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.AddEEPotentialRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.CountCloseRelation - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.RemoveLongDistanceEERelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeDeepPheRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- EvaluationOfEventTimeRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.AddPotentialRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.CountCloseRelation - Class in org.apache.ctakes.temporal.eval
-
public static class CountSentenceContainsTimes extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
- EvaluationOfEventTimeRelations.Overlap2Contains - Class in org.apache.ctakes.temporal.eval
-
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
- EvaluationOfEventTimeRelations.ParameterSettings - Class in org.apache.ctakes.temporal.eval
-
Holds a set of parameters for a relation extraction model
- EvaluationOfEventTimeRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.RemoveEventEventRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.RemoveNonUMLSEtEvents - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfEventTimeRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- EvaluationOfI2B2TemporalRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations.FindLongDisRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations.RemoveNonTLINKRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfI2B2TemporalRelations.RemoveNullArgumentRelations - Class in org.apache.ctakes.temporal.eval
-
public static class RemoveEventEventRelations extends JCasAnnotator_ImplBase {
public static final String PARAM_RELATION_VIEW = "RelationView";
- EvaluationOfI2B2TemporalRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
public static class RemoveCrossSentenceRelations extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
- EvaluationOfMarkableSalience - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfMarkableSalience(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File) - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience
-
- EvaluationOfMarkableSalience.CreatePseudoGoldMarkables - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfMarkableSalience.SetGoldConfidence - Class in org.apache.ctakes.coreference.eval
-
- EvaluationOfMetaTimeExpressionExtractor - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfMetaTimeExpressionExtractor(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, List<Integer>, Class<? extends Annotation>) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- EvaluationOfNEPredicateEventSpans - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfNEPredicateEventSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, Class<? extends Annotation>) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- EvaluationOfNEPredicateEventSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- EvaluationOfNeuralEEAndETRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- EvaluationOfNeuralEEAndETRelations.AddClosure - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.RemoveNonTLINKRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.RemoveNonUMLSEvents - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfNeuralEEAndETRelations.RemoveRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EvaluationOfSelfEventTimeRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- EvaluationOfSelfEventTimeRelations.AddClosure - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.AddContain2Overlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.AddFlippedOverlap - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.OverwriteTemporalRelationToSystem - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.RemoveEventEventRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfSelfEventTimeRelations.RemoveRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTemporalRelations_ImplBase - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTemporalRelations_ImplBase(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTemporalRelations_ImplBase.RemoveGoldAttributes - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTemporalRelations_ImplBase.TempRelOptions - Interface in org.apache.ctakes.temporal.eval
-
- EvaluationOfTimeSpans - Class in org.apache.ctakes.temporal.eval
-
- EvaluationOfTimeSpans(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, float, float, Class<? extends JCasAnnotator_ImplBase>, boolean, String[]) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- evaluationOutputDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- Event - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event
-
Never called.
- Event(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event
-
Internal - constructor used by generator
- Event(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event
-
- Event_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A real-world event; similar to Entity, but may bear some temporal properties and relationships.
- Event_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Event_Type
-
initialize variables to correspond with Cas Type and Features
- EventAdmissionTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventAdmissionTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- EventAndEntityViewer - Class in org.apache.ctakes.relationextractor.data.analysis
-
Print gold entities and events (potential relation arguments).
- EventAndEntityViewer() - Constructor for class org.apache.ctakes.relationextractor.data.analysis.EventAndEntityViewer
-
- EventAndEntityViewer.RelationContextPrinter - Class in org.apache.ctakes.relationextractor.data.analysis
-
Print gold standard entities and events.
- EventAndTimeExtractionPipeline - Class in org.apache.ctakes.temporal.pipelines
-
Given a trained event extraction model, run the event extractor on files in a directory.
- EventAndTimeExtractionPipeline() - Constructor for class org.apache.ctakes.temporal.pipelines.EventAndTimeExtractionPipeline
-
- EventAndTokenContextWriter() - Constructor for class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline.EventAndTokenContextWriter
-
- EventAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventAnnotator
-
- EventArgumentPropertyExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- EventArgumentPropertyExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventArgumentPropertyExtractor
-
- EventCell - Class in org.apache.ctakes.core.cc.pretty.cell
-
- EventCell(TextSpan, int) - Constructor for class org.apache.ctakes.core.cc.pretty.cell.EventCell
-
- EventContextAnalysisPipeline - Class in org.apache.ctakes.temporal.data.analysis
-
Print events and tokens with contexts to two separeate files.
- EventContextAnalysisPipeline() - Constructor for class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline
-
- EventContextAnalysisPipeline.EventAndTokenContextWriter - Class in org.apache.ctakes.temporal.data.analysis
-
Print all tokens with contexts and all events with contexts for further analysis.
- EventCoreferenceAnnotator - Class in org.apache.ctakes.coreference.ae
-
- EventCoreferenceAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- EventCoreferenceAnnotator.IdentifiedAnnotationPairComparator - Class in org.apache.ctakes.coreference.ae
-
- EventCoreferenceAnnotator.MarkableConfidenceComparator - Class in org.apache.ctakes.coreference.ae
-
- EventCoreferenceAnnotator.MarkablePairConfidenceComparator - Class in org.apache.ctakes.coreference.ae
-
- EventDischargeTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventDischargeTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- EventDurationDistribution - Class in org.apache.ctakes.temporal.duration
-
Extract durations of event mentions (e.g.
- EventDurationDistribution() - Constructor for class org.apache.ctakes.temporal.duration.EventDurationDistribution
-
- EventDurationDistribution.FileSizeComparator - Class in org.apache.ctakes.temporal.duration
-
- EventDurationDistribution.Options - Class in org.apache.ctakes.temporal.duration
-
- EventDurationDistribution.TemporalDurationExtractor - Class in org.apache.ctakes.temporal.duration
-
- EventEventAllPairRelPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventAllPairRelPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter
-
- EventEventAllPairRelPrinter.RelationSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventCNNAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventCNNAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventCNNAnnotator
-
- EventEventCRFRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventCRFRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- EventEventDurationStatistics - Class in org.apache.ctakes.temporal.duration
-
Analyze duration information for the relation arguments of CONTAINS relation.
- EventEventDurationStatistics() - Constructor for class org.apache.ctakes.temporal.duration.EventEventDurationStatistics
-
- EventEventDurationStatistics.AnalyseRelationArgumentDuration - Class in org.apache.ctakes.temporal.duration
-
Look at event-event relations whose event arguments have duration data.
- EventEventI2B2RelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventI2B2RelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- EventEventNeuralEvaluation - Class in org.apache.ctakes.temporal.nn.eval
-
- EventEventNeuralEvaluation(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- EventEventNeuralEvaluation.AddClosure - Class in org.apache.ctakes.temporal.nn.eval
-
- EventEventNeuralEvaluation.AddEEPotentialRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventEventNeuralEvaluation.CountCloseRelation - Class in org.apache.ctakes.temporal.nn.eval
-
- EventEventNeuralEvaluation.Overlap2Contains - Class in org.apache.ctakes.temporal.nn.eval
-
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
- EventEventNeuralEvaluation.RemoveRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventEventPosBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventEventPosBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventEventPosBasedAnnotator
-
- EventEventPositionBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventEventPositionBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventEventPositionBasedAnnotator
-
- EventEventRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- EventEventRelationGoldContainerAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventRelationGoldContainerAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- EventEventRelationSeedBasedAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventEventRelationSeedBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- EventEventRelPositionPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventRelPositionPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.EventEventRelPositionPrinter
-
- EventEventRelPositionPrinter.RelationSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventRelPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventRelPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.EventEventRelPrinter
-
- EventEventRelPrinter.RelationSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventEventTokenAndBIOBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventEventTokenAndBIOBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndBIOBasedAnnotator
-
- EventEventTokenAndPosBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventEventTokenAndPosBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndPosBasedAnnotator
-
- EventEventTokenBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventEventTokenBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- eventExpansion - Static variable in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- eventExpansion - Static variable in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- EventExtractionPipeline - Class in org.apache.ctakes.temporal.pipelines
-
Given a trained event extraction model, run the event extractor on files in a directory.
- EventExtractionPipeline() - Constructor for class org.apache.ctakes.temporal.pipelines.EventExtractionPipeline
-
- EventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention
-
Never called.
- EventMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention
-
Internal - constructor used by generator
- EventMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention
-
- EventMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention
-
- EventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Event.
- EventMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
-
initialize variables to correspond with Cas Type and Features
- EventMentionRemover() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EventMentionRemover
-
- EventPositionFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
Event postion feature extractor:
1.
- EventPositionFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventPositionFeatureExtractor
-
- EventPositionRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
extract the nearby nearest time, date information for any event
- EventPositionRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventPositionRelationFeaturesExtractor
-
- EventPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.GoldEventPrinter.EventPrinter
-
- EventPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.GoldEventPrinterWithLabels.EventPrinter
-
- EventPrinterPipeline - Class in org.apache.ctakes.temporal.data.analysis
-
Print events of given UMLS semantic type.
- EventPrinterPipeline() - Constructor for class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline
-
- EventPrinterPipeline.EventWriter - Class in org.apache.ctakes.temporal.data.analysis
-
Print events with a given UMLS semantic type.
- EventPrintingPipeline - Class in org.apache.ctakes.temporal.pipelines
-
Print event annotations and their context.
- EventPrintingPipeline() - Constructor for class org.apache.ctakes.temporal.pipelines.EventPrintingPipeline
-
- EventPrintingPipeline.PrintEventAnnotations - Class in org.apache.ctakes.temporal.pipelines
-
- EventProperties - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties() - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
Never called.
- EventProperties(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
Internal - constructor used by generator
- EventProperties(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
- EventProperties_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A set of mostly temporal properties that are unique to Events.
- EventProperties_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
initialize variables to correspond with Cas Type and Features
- EventPropertyExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- EventPropertyExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventPropertyExtractor
-
- EventTimeCNNAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventTimeCNNAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator
-
- EventTimeDurationStatistics - Class in org.apache.ctakes.temporal.duration
-
Analyze duration information for the relation arguments of CONTAINS relation.
- EventTimeDurationStatistics() - Constructor for class org.apache.ctakes.temporal.duration.EventTimeDurationStatistics
-
- EventTimeDurationStatistics.AnalyseRelationArgumentDuration - Class in org.apache.ctakes.temporal.duration
-
Look at those event-time relations whose event argument has duration data
and whose time argument can be normalized using Bethard timex normalizer.
- EventTimeFlatTreeFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
- EventTimeFlatTreeFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.EventTimeFlatTreeFeatureExtractor
-
- EventTimeI2B2RelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventTimeI2B2RelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- EventTimeNeuralEvaluation - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation(File, File, File, Evaluation_ImplBase.XMLFormat, Evaluation_ImplBase.Subcorpus, File, File, boolean, boolean, boolean, boolean, boolean, String, EvaluationOfEventTimeRelations.ParameterSettings) - Constructor for class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- EventTimeNeuralEvaluation.AddClosure - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.AddContain2Overlap - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.AddFlippedOverlap - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.AddPotentialRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.AddTransitiveContainsRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.CountCloseRelation - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.Overlap2Contains - Class in org.apache.ctakes.temporal.nn.eval
-
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
- EventTimeNeuralEvaluation.RemoveCrossSentenceRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.RemoveEventEventRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.RemoveNonUMLSEtEvents - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimeNeuralEvaluation.RemoveRelations - Class in org.apache.ctakes.temporal.nn.eval
-
- EventTimePosBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventTimePosBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventTimePosBasedAnnotator
-
- EventTimePositionBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventTimePositionBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventTimePositionBasedAnnotator
-
- EventTimeRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventTimeRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- EventTimeRelationFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
Given a pair of arguments, if any one of them is an event, get the related event-sectiontime as features
- EventTimeRelationFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventTimeRelationFeatureExtractor
-
- EventTimeRelationsFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- EventTimeRelationsFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.EventTimeRelationsFeaturesExtractor
-
- EventTimeRelPositionPrinter - Class in org.apache.ctakes.temporal.nn.data
-
contains(spring of 2009, drained):
perineal abscess drained in the spring of 2009 .
- EventTimeRelPositionPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.EventTimeRelPositionPrinter
-
- EventTimeRelPositionPrinter.RelationSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventTimeRelPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventTimeRelPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.EventTimeRelPrinter
-
- EventTimeRelPrinter.RelationSnippetPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print gold standard relations and their context.
- EventTimeSelfRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- EventTimeSelfRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- EventTimeTokenAndBIOBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventTimeTokenAndBIOBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
- EventTimeTokenAndPosBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventTimeTokenAndPosBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
- EventTimeTokenBasedAnnotator - Class in org.apache.ctakes.temporal.nn.ae
-
- EventTimeTokenBasedAnnotator() - Constructor for class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- EventTimeTokenBasedAnnotator.OutputMode - Enum in org.apache.ctakes.temporal.nn.ae
-
- EventToClearTKEventAnnotator - Class in org.apache.ctakes.temporal.ae
-
for every cTAKES EventMention annotation, create a ClearTK Event Annotation
- EventToClearTKEventAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.EventToClearTKEventAnnotator
-
- EventWriter() - Constructor for class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline.EventWriter
-
- EVERYOTHERDAY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- ExactStringPairer - Class in org.apache.ctakes.coreference.ae.pairing.cluster
-
- ExactStringPairer() - Constructor for class org.apache.ctakes.coreference.ae.pairing.cluster.ExactStringPairer
-
- ExampleHelloWorldAnnotator - Class in org.apache.ctakes.examples.ae
-
- ExampleHelloWorldAnnotator() - Constructor for class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- EXCLUDE_RELA - Static variable in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- execute() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionSampleFeatureGenerator
-
- execute() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
-
- execute() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest
-
- execute() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest2
-
- execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.DateFSM
-
Executes the finite state machines.
- execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.FractionFSM
-
Executes the finite state machines.
- execute(List) - Method in interface org.apache.ctakes.core.fsm.machine.FSM
-
- execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.MeasurementFSM
-
Executes the finite state machines.
- execute(List<?>) - Method in class org.apache.ctakes.core.fsm.machine.NegationFSM
-
Executes the finite state machines.
- execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.PersonTitleFSM
-
Executes the finite state machines.
- execute(List<? extends BaseToken>, Set<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RangeFSM
-
Executes the finite state machines.
- execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.RomanNumeralFSM
-
Executes the finite state machines.
- execute(List<TextToken>) - Method in class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM
-
Executes the finite state machines.
- execute(List<? extends BaseToken>) - Method in class org.apache.ctakes.core.fsm.machine.TimeFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DecimalStrengthFSM
-
Executes the finite state machines.
- execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DosagesFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DrugChangeStatusFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.DurationFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FormFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FractionStrengthFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
-
Executes the finite state machines.
- execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.FrequencyUnitFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RangeStrengthFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.RouteFSM
-
Executes the finite state machines.
- execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
-
Executes the finite state machines.
- execute(List, Set, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.HyphenatedDrugFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.NegIndicatorFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.NonIndicatorFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
-
Executes the finite state machines.
- execute(List) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
-
Executes the finite state machines.
- execute(List, Set) - Method in class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM
-
Executes the finite state machines.
- execute() - Method in class org.apache.ctakes.jdl.AppJdl
-
Execute the loader of the data into the database.
- execute(List<?>) - Method in class org.apache.ctakes.smokingstatus.machine.NegationFSM
-
Executes the finite state machines.
- execute() - Method in class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- execute() - Method in class org.mitre.medfacts.uima.CreateZonerDescriptor
-
- execute() - Method in class org.mitre.medfacts.uima.RunZoner
-
- executeBatch(PreparedStatement) - Static method in class org.apache.ctakes.jdl.data.loader.Loader
-
- exists(File) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver
-
- exit() - Method in class org.apache.ctakes.core.fsm.state.NamedState
-
- exit() - Method in class org.apache.ctakes.core.fsm.state.NonTerminalEndState
-
- exit() - Method in class org.apache.ctakes.drugner.fsm.states.util.IndentStartState
-
- expandEvent - Static variable in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- expandToNP(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander
-
- expandToNP(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline
-
- expectedDuration(Map<String, Float>) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Compute expected duration in seconds.
- exportAttributeNames(SparseData, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
- exportAttributeNames(BufferedWriter, SparseData) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
assign indices to each attribute.
- exportAttributeNames(BufferedWriter, SparseData) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
add instance_id as first in the map of numeric attribute
- exportBagOfWords(String) - Method in interface org.apache.ctakes.ytex.kernel.BagOfWordsExporter
-
- ExportBagOfWords - Class in org.apache.ctakes.ytex.weka
-
Export bag of words using the queries specified in the given property/xml
file.
- ExportBagOfWords() - Constructor for class org.apache.ctakes.ytex.weka.ExportBagOfWords
-
- exportBagOfWords(String, String, String, String, BufferedWriter) - Method in interface org.apache.ctakes.ytex.weka.WekaBagOfWordsExporter
-
- exportBagOfWords(String, BagOfWordsDecorator) - Method in interface org.apache.ctakes.ytex.weka.WekaBagOfWordsExporter
-
- exportBagOfWords(String, String, String, String, BufferedWriter) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- exportBagOfWords(String, String, String, String, BufferedWriter, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- exportBagOfWords(String) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- exportBagOfWords(String, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- ExportCAS - Class in org.apache.ctakes.ytex.tools
-
read specified document id's cas, send to stdout
- ExportCAS() - Constructor for class org.apache.ctakes.ytex.tools.ExportCAS
-
- exportClassIds(String, Map<String, Integer>, String) - Method in interface org.apache.ctakes.ytex.kernel.KernelUtil
-
export the class id to class name map.
- exportClassIds(String, Map<String, Integer>, String) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
export the class id to class name map.
- exportData(String, String) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataExporter
-
- exportData(Properties, SparseDataFormatter, BagOfWordsDecorator) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataExporter
-
- exportData(InstanceData, SparseDataFormatter, Properties, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- exportData(Properties, SparseDataFormatter, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- exportData(String, String) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- exportData(SparseData, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory.SVMLinDataFormatter
-
- exportData(SparseData, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- exportData(SparseData, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory.SGTFormatter
-
- exportDataForInstances(SparseData, SortedMap<Long, String>, BiMap<String, Integer>, BufferedWriter, BufferedWriter) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- exportDataForLabel(String, String, SparseData, SortedMap<Long, String>, BiMap<String, Integer>) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
Export data file and id file
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
export the fold train/test set.
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
export the given train/test set
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
export the given train/test set
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl.WekaAttributeEvaluatorFormatter
-
- exportFold(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- exportGramMatrix(Properties) - Method in interface org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporter
-
- exportGramMatrix(Properties) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- exportGramMatrix(Properties) - Method in interface org.apache.ctakes.ytex.R.RGramMatrixExporter
-
- exportGramMatrix(Properties) - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- ExportGramMatrix - Class in org.apache.ctakes.ytex.weka
-
- ExportGramMatrix() - Constructor for class org.apache.ctakes.ytex.weka.ExportGramMatrix
-
- exportGramMatrix(String) - Method in interface org.apache.ctakes.ytex.weka.GramMatrixExporter
-
- exportGramMatrix(String) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- exportGramMatrix(BufferedWriter, KernelEvaluation, GramMatrixExporterImpl.GramMatrixType, Map<Long, String>, Map<Long, Integer>) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- exportLabel(String, SortedMap<Long, Integer>) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
Write the 'label' file.
- exportNetwork(String, Properties) - Method in interface org.apache.ctakes.ytex.kernel.CytoscapeHelper
-
- exportNetwork(ConceptGraph, String, String, String, int, BufferedWriter, BufferedWriter) - Method in interface org.apache.ctakes.ytex.kernel.CytoscapeHelper
-
- exportNetwork(ConceptGraph, String, String, String, int, BufferedWriter, BufferedWriter) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- exportNetwork(String, Properties) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- exportProperties - Variable in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
export properties - properties file that controls what to do for this
export
- exportSparseMatrix(String, SparseData) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
export sparse matrix data for use in matlab/R.
- exportSparseRow(SparseData, long, BufferedWriter, int) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
- exportSubtree(String, Properties) - Method in interface org.apache.ctakes.ytex.kernel.CytoscapeHelper
-
- exportSubtree(String, Properties) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- exportTransductiveData(String, String, SparseData, SortedMap<Long, String>, Set<Long>, BiMap<String, Integer>) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
Export data file and id file
- extendedSearch(String, String, Date, Date, Integer, Boolean) - Method in interface org.apache.ctakes.ytex.web.search.DocumentSearchService
-
Extended search
- extendedSearch(String, String, Date, Date, Integer, Boolean) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
Extended search
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.attributes.features.GenericFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.attributes.features.HistoryFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.attributes.features.SubjectFeaturesExtractor
-
- extract(JCas, Annotation) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
-
- extract(JCas, Annotation) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
-
- extract(JCas, Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveLeftFragmentExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AboveRightFragmentExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionAboveLeftTreeExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionDependencyTreeExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.ContextWordWindowExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.DependencyPathRegexpFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.DependencyWordsFragmentExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.NegationDependencyFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SRLFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SurroundingExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.UncertaintyFeatureExtractor
-
- extract(JCas, BaseToken) - Method in class org.apache.ctakes.core.cleartk.ContinuousTextExtractor
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.core.cleartk.FollowingWithPadding
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.core.cleartk.MaxContext
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.core.cleartk.MinContext
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.core.cleartk.PrecedingWithPadding
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.core.cleartk.SumContext
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.AttributeFeatureExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAgreementFeaturesExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAgreementFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAttributeFeaturesExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAttributeFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAttributeVectorExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDepHeadExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDepHeadExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistanceFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistSemExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterMentionFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSalienceFeaturesExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSalienceFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSectionFeaturesExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSectionFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSemTypeDepPrefsFeatureExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterStackFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterStringFeaturesExtractor
-
- extract(JCas, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterUMLSFeatureExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterUMLSFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.CorefSyntaxFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.DistanceFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.DistSemFeatureExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.salience.ClinicalFeatureExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.salience.GrammaticalRoleFeatureExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.salience.MorphosyntacticFeatureExtractor
-
- extract(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.features.salience.SemanticEnvironmentFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.SalienceFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.SectionFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.TemporalFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.features.UMLSFeatureExtractor
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.coreference.extractors.ContinuousBag
-
- extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.apache.ctakes.coreference.extractors.ContinuousBag.Surrounding
-
- extract(JCas, BaseToken) - Method in class org.apache.ctakes.coreference.extractors.ContinuousTextExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.ArgumentOrderFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyPathFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.EmbeddingFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.EntitySpanFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.FlatTreeFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.NamedEntityFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor
-
- extract(JCas, T1, T2) - Method in interface org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor
-
Extract features for the pair of named entity mentions.
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.features.TreeFragmentFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IDictionary) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.CheckSpecialWordRelationExtractor
-
- extract(int, int, int) - Method in class org.apache.ctakes.temporal.ae.feature.ChunkingExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.ClosestVerbExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.ConjunctionRelationFeaturesExtractor
-
- extract(JCas, BaseToken) - Method in class org.apache.ctakes.temporal.ae.feature.ContinuousTextExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.CoordinateFeaturesExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.DateAndMeasurementExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.DependencyFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.DependencyPathFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.DependingVerbsFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.DeterminerRelationFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.DocTimeRelFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.duration.DurationDistributionFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.duration.DurationEventEventFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.duration.DurationEventTimeFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.duration.DurationExpectationFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.duration.DurationTimeUnitFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.EmptyFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventArgumentPropertyExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventPositionFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventPositionRelationFeaturesExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventPropertyExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventTimeRelationFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.EventTimeRelationsFeaturesExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.FramesetCategoryExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.ListFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.MultiTokenFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.NearbyVerbTenseRelationExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.NearbyVerbTenseXExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.NearestFlagFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.NoOtherETPuntInBetweenFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.NumberOfEventsInTheSameSentenceExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.NumberOfEventTimeBetweenCandidatesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.OverlappedHeadFeaturesExtractor
-
Extract features for the pair of named entity mentions.
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.ParseFeatureExtractor
-
- extract(JCas, int, int) - Method in class org.apache.ctakes.temporal.ae.feature.ParseSpanFeatureExtractor
-
- extract(BaseToken) - Method in class org.apache.ctakes.temporal.ae.feature.PredicateArgumentExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.RelationEmbeddingFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticEmbeddingFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.RelationSyntacticETEmbeddingFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.SectionHeaderExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.SectionHeaderRelationExtractor
-
- extract(JCas, FOCUS_T) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.SpecialAnnotationRelationExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.SRLRelationFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.SyntacticParentFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TemporalAttributeFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TemporalAttributeForMixEventTimeExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TemporalPETFlatExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.TimeWordTypeExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.TimeXExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TimeXPropertyRelationFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TimeXRelationFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.TokenPropertyFeaturesExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.DependencySingleTreeExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.EventTimeFlatTreeFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.SyntaticSingleTreeExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalFTExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPathExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPETExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.UMLSBasedTokenFeaturesExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.UmlsFeatureExtractor
-
- extract(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.feature.UmlsSingleFeatureExtractor
-
- extract(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.feature.UnexpandedTokenFeaturesExtractor
-
- extractAboveLeftConceptTree(JCas, Annotation, SemanticClasses) - Static method in class org.apache.ctakes.assertion.util.AssertionTreeUtils
-
- extractAboveRightConceptTree(JCas, Annotation, SemanticClasses) - Static method in class org.apache.ctakes.assertion.util.AssertionTreeUtils
-
- ExtractDoctimerelPairProbabilities - Class in org.apache.ctakes.temporal.data.analysis
-
- ExtractDoctimerelPairProbabilities() - Constructor for class org.apache.ctakes.temporal.data.analysis.ExtractDoctimerelPairProbabilities
-
- ExtractDurationsUsingContainsRelation - Class in org.apache.ctakes.temporal.duration
-
Use event-time CONTAINS relations to extract event duration distributions.
- ExtractDurationsUsingContainsRelation() - Constructor for class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation
-
- ExtractDurationsUsingContainsRelation.ProcessRelations - Class in org.apache.ctakes.temporal.duration
-
Go over even-time relations and collect all times with which
each of the events occurs in CONTAINS relation.
- extractFeatureTree(JCas, Annotation, SemanticClasses) - Static method in class org.apache.ctakes.assertion.util.AssertionTreeUtils
-
- extractFileToDir(File, JarInputStream, String) - Static method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- extractFirstToken(String, Pattern) - Static method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- extractForNode(JCas, IdentifiedAnnotation, String) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyTreeFeaturesExtractor
-
- extractInformation(T) - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator
-
- extractInformation(IdentifiedAnnotation) - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator
-
- ExtractionPrepAnnotator - Class in org.apache.ctakes.clinicalpipeline.ae
-
UIMA annotator that prepares the CAS for output - performs
some (final) updates to the CAS
- ExtractionPrepAnnotator() - Constructor for class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator
-
- ExtractorListFeatureFunctionConverter - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- ExtractorListFeatureFunctionConverter() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.ExtractorListFeatureFunctionConverter
-
- extractPathEnclosedTree(TreebankNode, TreebankNode, JCas) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- extractPathTree(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- extractUMLSFirstWord(String) - Static method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- extractUMLSFirstWord(String) - Static method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- gap() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- GASTRIC - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- GASTRIC - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- GEL - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- generateAnnotationMap(JCas) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- generateAnnotationMap(JCas, Integer) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- GenerateDependencyRepresentation - Class in org.apache.ctakes.assertion.pipelines
-
- GenerateDependencyRepresentation() - Constructor for class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation
-
- GenerateDependencyRepresentation.Options - Class in org.apache.ctakes.assertion.pipelines
-
- generateFolds(Set<String>, InstanceData, String, String, int, String, int, int, Random) - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
generate folds for a run
- generateFolds(InstanceData, Properties) - Method in interface org.apache.ctakes.ytex.kernel.KernelUtil
-
generate folds from the label to instance map.
- generateFolds(InstanceData, Properties) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- generateRuns(String, String, String, int, int, Integer, int) - Method in interface org.apache.ctakes.ytex.kernel.FoldGenerator
-
Generate cross validation folds, store in database.
- generateRuns(SortedMap<String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>>, int, int, Integer, int) - Method in interface org.apache.ctakes.ytex.kernel.FoldGenerator
-
Generate cross validation folds, don't store in database.
- generateRuns(String, String, String, int, int, Integer, int) - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- generateRuns(SortedMap<String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>>, int, int, Integer, int) - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- GenerateSentenceBIODescriptors - Class in org.apache.ctakes.core.pipeline
-
- GenerateSentenceBIODescriptors() - Constructor for class org.apache.ctakes.core.pipeline.GenerateSentenceBIODescriptors
-
- GenerateTrainingData - Class in org.apache.ctakes.smokingstatus.MLutil
-
- GenerateTreeRepresentation - Class in org.apache.ctakes.assertion.pipelines
-
- GenerateTreeRepresentation() - Constructor for class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation
-
- GenerateTreeRepresentation.Options - Class in org.apache.ctakes.assertion.pipelines
-
- generateXMI(SHARPXMI.Options) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- GenericAttributeAnalysisEngine - Class in org.apache.ctakes.assertion.attributes
-
This class provides a basic generic attribute extraction technique based on dependency parses.
- GenericAttributeAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
-
- GenericAttributeClassifier - Class in org.apache.ctakes.assertion.attributes.generic
-
- GenericAttributeClassifier() - Constructor for class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
-
- GenericCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- GenericCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- GenericFeaturesExtractor - Class in org.apache.ctakes.assertion.attributes.features
-
SubjectFeaturesExtractor
Ports the features and classification decisions of the first version (logic) of the subject tool
- GenericFeaturesExtractor() - Constructor for class org.apache.ctakes.assertion.attributes.features.GenericFeaturesExtractor
-
- GenericMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup
-
- GenericMetaDataHitImpl(Map<String, String>) - Constructor for class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
-
- GenericModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
Never called.
- GenericModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
Internal - constructor used by generator
- GenericModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
- GenericModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
- GenericModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The Generic modifier indicates that a named entity mention is generic, i.e., not related to the instance of a disorder, sign/symptom, etc.
- GenericModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
-
initialize variables to correspond with Cas Type and Features
- get(Object) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- get(Object) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- get(Object) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- get(Object) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- get(Object) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- get(int) - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- get() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- get(Object) - Method in class org.apache.ctakes.utils.struct.CounterMap
-
- get(Object) - Method in class org.apache.ctakes.utils.struct.CounterTreeMap
-
- get(String, K) - Static method in class org.apache.ctakes.utils.struct.MapFactory
-
- get1() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- get1(int) - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- get2() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- get2(int) - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- getAbnormalInterpretation() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
getter for abnormalInterpretation - gets
- getAbnormalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- getAbnormalInterpretation() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
getter for abnormalInterpretation - gets
- getAbnormalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- getAE(File) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- getAeNames() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- getAlgorithm() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getAllAnnotations() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- getAllAuiStr(String) - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
get all aui, str from mrconso
- getAllAuiStr(String) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
sets up the umls_aui_fword table.
- getAllCollections() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- getAllCollections() - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
- getAllCollections() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- getAllCollections() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- getAllCollections() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- getAllCollections() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for alleviatingFactor - gets
- getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for alleviatingFactor - gets
- getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for alleviatingFactor - gets
- getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getAlleviatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for alleviatingFactor - gets
- getAlleviatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getAllInfos(Class<?>) - Static method in class org.apache.ctakes.core.pipeline.PipeBitInfoUtil
-
- getAllInstanceIds(String, int, int) - Method in class org.apache.ctakes.ytex.kernel.InstanceData
-
get all the instance ids for the specified scope
- getAllKernelEvaluationsForInstance(KernelEvaluation, long) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- getAllKernelEvaluationsForInstance(KernelEvaluation, long) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getAllLeaves(ConceptGraph, BufferedWriter) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- getAllowSmallerSystemArguments() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getAllParameters(Class<?>) - Static method in class org.apache.ctakes.core.pipeline.PipeBitInfoUtil
-
- getAllRows() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTable
-
- getAllTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- getAllVocabularies() - Method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- getAlreadyLinkedPairs(JCas, Annotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getAnaforaOutput() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getAnalysisBatch() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getAnalysisEngineDesc() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- getAnaphor() - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
getter for anaphor - gets
- getAnaphor(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- getAnaphor() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
-
getter for anaphor - gets
- getAnaphor(int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
- getAnaphoric_prob() - Method in class org.apache.ctakes.coreference.type.Markable
-
getter for anaphoric_prob - gets
- getAnaphoric_prob(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- getAnaphoricityFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
-
- getAnimate(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- getAnnoBaseId() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- getAnnoClassName() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getAnnoFieldName() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getAnnoMappingInfos() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getAnnotation(int) - Method in class org.apache.ctakes.temporal.utils.AnnotationIdCollection
-
- getAnnotation(Annotation) - Method in class org.apache.ctakes.temporal.utils.AnnotationIdCollection
-
- getAnnotation(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Returns the XcasAnnotation object associated with
the specified internal id.
- getAnnotationId(Annotation) - Method in class org.apache.ctakes.temporal.utils.AnnotationIdCollection
-
- getAnnotationIds() - Method in class org.apache.ctakes.temporal.utils.AnnotationIdCollection
-
- getAnnotationIterator(JCas) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
- getAnnotationKey(Annotation) - Static method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- getAnnotations() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Gets a list of Annotation objects that represent annotations based
off of document syntactic cues.
- getAnnotationsByCode(JCas, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByCode(JCas, T, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByCode(Collection<IdentifiedAnnotation>, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByCui(JCas, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByCui(JCas, T, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByCui(Collection<IdentifiedAnnotation>, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByTui(JCas, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByTui(JCas, T, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsByTui(Collection<IdentifiedAnnotation>, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getAnnotationsInSpan(JCas, int, int, int, int[]) - Static method in class org.apache.ctakes.core.util.FSUtil
-
- getAnnotationsInSpanIterator(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil
-
Deprecated.
- getAnnotationsInWindow(JCas, AnnotationFS, List<FastLookupToken>, Collection<Integer>) - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
For the given lookup window fills two collections with 1) All tokens in the window,
and 2) indexes of tokens in the window to be used for lookup
- getAnnotationsIteratorInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil
-
For correct behavior, requires types to be listed in TypePriorities so that the subiterator works as expected
- getAnnotationTree(JCas, Annotation) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.ClearTKDocTimeRelAnnotator
-
- getAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.ClearTKDocumentCreationTimeAnnotator
-
- getAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.ClearTKLinkToTHYMELinkAnnotator
-
- getAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.EventToClearTKEventAnnotator
-
- getAnnotatorDescription(File) - Static method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- getAnnotatorDescription() - Static method in class org.apache.ctakes.temporal.ae.TimexToClearTKTimexAnnotator
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- getAnnotatorDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- getAnnotatorNames() - Static method in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
Returns the names of the annotators in the Knowtator files that represent the gold standard
- getAnnotatorNames() - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
Returns the names of the annotators in the Knowtator files that represent the gold standard
- getAnnotatorNames() - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- getAntecedent() - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
getter for antecedent - gets Proposed antecedent
- getAntecedent(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- getAntecedentList() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
-
getter for antecedentList - gets
- getAntecedentList(int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
- getApplicationContext() - Static method in class org.apache.ctakes.ytex.kernel.KernelContextHolder
-
- getApplicationContext() - Static method in class org.apache.ctakes.ytex.kernel.SimSvcContextHolder
-
- getApplicationContext() - Static method in class org.apache.ctakes.ytex.uima.ApplicationContextHolder
-
- getArg1() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
-
- getArg1() - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.IdentifiedAnnotationPair
-
- getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
getter for arg1 - gets
- getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
- getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
getter for arg1 - gets
- getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
- getArg1() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
getter for arg1 - gets
- getArg1(int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
- getArg2() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
-
- getArg2() - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.IdentifiedAnnotationPair
-
- getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
getter for arg2 - gets
- getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
- getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
getter for arg2 - gets
- getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
- getArg2() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
getter for arg2 - gets
- getArg2(int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
- getArgument() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
getter for argument - gets
- getArgument(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- getArgument() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
getter for argument - gets
- getArgument(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
- getAsCui(Long) - Method in enum org.apache.ctakes.dictionary.lookup2.util.CuiCodeUtil
-
- getAsCui(Long) - Method in enum org.apache.ctakes.gui.dictionary.umls.CuiCodeUtil
-
- getAsEvaluation() - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- getAspect() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for aspect - gets
- getAspect(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getAssertionType() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
getter for assertionType - gets assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else
- getAssertionType(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
- getAssertionTypeMap() - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- getAssertionValue() - Method in class org.apache.ctakes.assertion.stub.AssertionAnnotation
-
- getAssociatedConcept() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
getter for associatedConcept - gets
- getAssociatedConcept(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
- getAssociatedSignSymptom() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for associatedSignSymptom - gets
- getAssociatedSignSymptom(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getAssociatedSignSymptom() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for associatedSignSymptom - gets
- getAssociatedSignSymptom(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getAsStream(String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
- getAsStream(Class<?>, String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
- getAsTui(Integer) - Static method in class org.apache.ctakes.dictionary.lookup2.util.TuiCodeUtil
-
- getAsTui(String) - Static method in class org.apache.ctakes.dictionary.lookup2.util.TuiCodeUtil
-
- getAttribute() - Method in class org.apache.ctakes.typesystem.type.util.Pair
-
getter for attribute - gets
- getAttribute(int) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
-
- getAttribute(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Returns the value of the specified attribute.
- getAttributeKey() - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- getAttributeName() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
getter for attributeName - gets
- getAttributeName(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
-
- getAttributeName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NodeAttributeKernel
-
- getAttributes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
Attributes of each named entity indexed on mention ids.
- getAttributes(Document, String[]) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
Attributes of each named entity indexed on mention ids.
- getAttributeSelection() - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- getAttributeStringValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
getter for attributeStringValue - gets
- getAttributeStringValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
-
- getAtui() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getAui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getAui() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- getAuthorSpecialty() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for authorSpecialty - gets
- getAuthorSpecialty(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getBagOfWordsExporter() - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- getBaseline() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.TempRelOptions
-
- getBatchCount() - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter.TableSqlInfo
-
- getBatchesDirectory() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options
-
- getBatchSize() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getBegin() - Method in class org.apache.ctakes.assertion.stub.Annotation
-
- getBegin() - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- getBegin() - Method in class org.apache.ctakes.assertion.stub.LineTokenToCharacterOffsetConverter.BeginAndEndCharacterOffsetPair
-
- getBegin() - Method in class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
- getBegin() - Method in interface org.apache.ctakes.core.cc.pretty.textspan.TextSpan
-
- getBegin() - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator.NegSpan
-
- getBegin() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DosageElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.DurationElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FormElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.RouteElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
-
- getBeginOffset() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
-
- getBestEnt(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getBestEnt(JCas, CollectionTextRelation) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getBestEnt(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getBestEnt(JCas, CollectionTextRelation) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterMentionPairer_ImplBase
-
- getBestEnt(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterMentionPairer_ImplBase
-
- getBestLCS(Set<String>, boolean, Map<String, Double>) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
get the best lcs
- getBestLCS(Set<String>, boolean, Map<String, Double>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getBestLCS(Set<String>, Map<String, Double>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getBIOContext(JCas, Sentence, IdentifiedAnnotation, String, IdentifiedAnnotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
- getBirthDate() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for birthDate - gets
- getBirthDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getBitName() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getBitName() - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getBitName() - Method in interface org.apache.ctakes.gui.pipeline.bit.user.UserBit
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getBodyLaterality() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for bodyLaterality - gets
- getBodyLaterality(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getBodyLocation() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for bodyLocation - gets
- getBodyLocation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getBodySide() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for bodySide - gets
- getBodySide(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getBorderGap() - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Gets the border gap
- getBsvItems(String) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- getBuilder() - Method in class org.apache.ctakes.core.pipeline.PiperFileReader
-
- getCacheKey(Method, Object[]) - Method in interface org.apache.ctakes.ytex.kernel.evaluator.CacheKeyGenerator
-
- getCacheKey(Object, Object) - Method in interface org.apache.ctakes.ytex.kernel.evaluator.CacheKeyGenerator
-
- getCacheKey(Method, Object[]) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SymmetricPairCacheKeyGenerator
-
- getCacheKey(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SymmetricPairCacheKeyGenerator
-
- getCacheKeyGenerator() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- getCacheKeyGenerator() - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- getCacheManager() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- getCacheManager() - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- getCacheManager() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- getCacheManager() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getCacheName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- getCacheName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- getCandidateRelationArgumentPairs(JCas, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1DegreeOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4DegreeOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.CausesBringsAboutRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.ManagesTreatsRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.ManifestationOfRelationExtractorAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
Selects the relevant mentions/annotations within a covering annotation for
relation identification/extraction.
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.F1BaselineEventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.PrecisionBaselineEventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventEventRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.TimidBaselineEventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
Selects the relevant mentions/annotations within a covering annotation for
relation identification/extraction.
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePosBasedAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePositionBasedAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
- getCandidateRelationArgumentPairs(JCas, Annotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- getCanonical(File, String) - Static method in class org.apache.ctakes.jdl.common.FileUtil
-
- getCanonical(File) - Static method in class org.apache.ctakes.jdl.common.FileUtil
-
- getCanonicalForm(WordToken) - Static method in class org.apache.ctakes.core.util.WordTokenUtil
-
In some pipelines LVG is not run, hence a canonical form does not exist.
- getCanonicalForm() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
getter for canonicalForm - gets
- getCanonicalForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- getCapitalization() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
getter for capitalization - gets
- getCapitalization(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- getCaps() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter
-
- getCaps() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
-
- getCaps() - Method in interface org.apache.ctakes.core.fsm.token.WordToken
-
- getCaps() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Gets the caps state of the token.
- getCas() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getCategory() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for category - gets Type of Event.
- getCategory(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getCategory() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for category - gets
- getCategory(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getCategory() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
getter for category - gets
- getCategory(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
- getCellEditorValue() - Method in class org.apache.ctakes.gui.component.FileTableCellEditor
- getChangeStatus() - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
getter for changeStatus - gets Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
- getChangeStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
-
- getChangeStatusBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getChangeStatusBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for changeStatusBegin - gets
- getChangeStatusBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getChangeStatusEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getChangeStatusEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for changeStatusEnd - gets
- getChangeStatusEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getChar() - Method in class org.apache.ctakes.core.fsm.adapters.CharacterTokenAdapter
-
- getChar() - Method in class org.apache.ctakes.core.fsm.token.adapter.CharacterTokenAdapter
-
- getChar() - Method in interface org.apache.ctakes.core.fsm.token.CharacterToken
-
- getCharFeatures(char, String) - Static method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- getChildAnnoBaseId() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- getChildAnnotationId() - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- getChildren() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for children - gets
- getChildren(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
indexed getter for children - gets an indexed value -
- getChildren(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getChildren(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getChildren() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getChildren() - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- getChildrenArray() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getChildUimaTypeId() - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- getChunkType() - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk
-
getter for chunkType - gets
- getChunkType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
-
- getClassAuto() - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- getClasses() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getClassFeatureQuery() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getClassGold() - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- getClassIds() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- getClassification() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
getter for classification - gets Smoking status classification for the given sentence.
- getClassification(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- getClassification() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
getter for classification - gets represents the document level classification that
RecordResolutionAnnotator assigns
- getClassification(int) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
- getClassificationOnly() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.TempRelOptions
-
- getClassifierEvaluation() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getClassifierEvaluation() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getClassifierEvaluationDao() - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- getClassifierEvaluationId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getClassifierEvaluationIRStatId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getClassifierInstanceEvaluationId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getClassifierInstanceEvaluations() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getClassifierInstanceProbabilities() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getClassWeights() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getCliOptionalValue(CliOptionals, String) - Static method in class org.apache.ctakes.core.pipeline.CliOptionalsHandler
-
Brute force method to get option values
- getClosedTlinks(JCas) - Method in class org.apache.ctakes.temporal.utils.TLinkTypeArray2
-
- getClosePairs(JCas, Annotation, double) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getClosure() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.TempRelOptions
-
- getCluster() - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- getCluster() - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- getCluster() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
getter for cluster - gets
- getCluster(int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
- getCode() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for code - gets
- getCode(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getCode() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getCode() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getCodeNames() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- getCodeNames() - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- getCodes(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(IdentifiedAnnotation, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(JCas) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(JCas, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(JCas, T) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(JCas, T, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(Collection<IdentifiedAnnotation>) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(Collection<IdentifiedAnnotation>, String) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCodes(String) - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- getCodes(String) - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- getCodes(String) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getCodingScheme() - Method in class org.apache.ctakes.dictionary.lookup2.consumer.AbstractTermConsumer
-
- getCodingScheme() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for codingScheme - gets
- getCodingScheme(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getCodingScheme() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getCollection(K) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
gets a collection mapped with key.
- getCollection(K) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
gets a collection mapped with key.
- getCollection(K) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
gets a collection mapped with key.
- getCollection(K) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
gets a collection mapped with key.
- getCollection(K) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
gets a collection mapped with key.
- getCollection(K) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
gets a collection mapped with key.
- getCollectionReader(List<File>) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- getCollectionReader(List<File>) - Static method in class org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
-
- getCollectionReader(File) - Static method in class org.apache.ctakes.relationextractor.data.analysis.Utils
-
Instantiate an XMI collection reader.
- getCollectionReader(List<File>) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.Evaluation_ImplBase
-
- getCollectionReader(List<File>) - Static method in class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline
-
- getCollectionReader(List<File>) - Static method in class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation
-
- getCollectionReader(List<File>) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Instantiate an XMI collection reader.
- getCollectionReader(List<Integer>) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getColor(String) - Static method in class org.apache.ctakes.gui.util.ColorFactory
-
- getColor(int) - Static method in class org.apache.ctakes.gui.util.ColorFactory
-
- getColorsForTypesFromFile(CasAnnotationViewer, File) - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
copied from AnnotationViewerDialog.
- getColorsForTypesFromFile(CasAnnotationViewer, File) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Reads in annotation-color associations from stylemap file.
- getColumn() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the column property.
- getColumn() - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Gets the value of the column property.
- getColumnClass(int) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- getColumnClass(int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- getColumnClass(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- getColumnCount() - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- getColumnCount() - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- getColumnCount() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- getColumnMappingInfos() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getColumnName(int) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- getColumnName(int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- getColumnName(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- getColumnName() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getCombinedTypeConservative(TlinkType, TlinkType) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getCombinedTypeLiberal(TlinkType, TlinkType) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getCommit() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the commit property.
- getCommit() - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Gets the value of the commit property.
- getCommonAncestor(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getCommonAncestor(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
Returns the common ancestor between them
- getCommonNode() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- getComponents() - Static method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- getConcept() - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- getConcept1() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- getConcept1() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getConcept1Path() - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- getConcept2() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- getConcept2() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getConcept2Path() - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- getConceptByFirstWord(String) - Method in interface org.apache.ctakes.ytex.web.search.ConceptSearchService
-
get Concepts that start with the specified text.
- getConceptByFirstWord(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- getConceptDao() - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- getConceptDao() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getConceptDao() - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- getConceptDao() - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- getConceptDao() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getConceptFactories() - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getConceptFactories() - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getConceptFactory(String) - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getConceptFactory(String) - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getConceptFeatureStructures(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getConceptGraph(String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ConceptDao
-
retrieve an existing concept graph.
- getConceptGraph(String) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- getConceptGraph() - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
- getConceptGraph() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getConceptGraph() - Method in class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- getConceptGraphName() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getConceptGraphName() - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
- getConceptGraphName() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getConceptGraphName() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getConceptGraphs() - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityRestService
-
- getConceptGraphs() - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityWebService
-
- getConceptGraphs() - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- getConceptId() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- getConceptID() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getConceptId(FeatureStructure) - Method in class org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
-
get the concept id for the specified concept.
- getConceptId() - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- getConceptList() - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- getConceptMap() - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- getConceptPair() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- getConceptPair() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean.SimilarityEntry
-
- getConceptPairText() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getConceptSearchService() - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- getConceptSearchService() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- getConceptSetName() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getConceptSetName() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getConceptSimilarityService() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- getConceptSimilarityService() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- getConceptSimilarityService() - Method in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
- getConceptSimilarityService() - Method in class org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguatorImpl
-
- getConceptSimilarityService() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- getConceptText() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
getter for conceptText - gets
- getConceptText(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- getConceptType() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
getter for conceptType - gets the concept type -- one of problem, treatment, or test
- getConceptType(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- getConceptType() - Method in class org.apache.ctakes.assertion.stub.AssertionAnnotation
-
- getConditional() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for conditional - gets
- getConditional(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getConditional() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for conditional - gets Whether the relation is conditional/hypothetical.
- getConditional(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getConditional() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for conditional - gets
- getConditional(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getConfidence() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for confidence - gets The confidence of the annotation.
- getConfidence(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getConfidence() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for confidence - gets
- getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getConfidence() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for confidence - gets
- getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getConfidence() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for confidence - gets The confidence of the annotation.
- getConfidence(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getConfidenceScoreElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getConfidenceScoreElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getConfidenceScoreElement() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
-
- getConfidentPairs(JCas, Annotation, double) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getConfig() - Static method in class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- getConnection() - Method in interface org.apache.ctakes.core.resource.JdbcConnectionResource
-
Gets the JDBC connection.
- getConnection() - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
- getConnection(String, String, String, String) - Method in enum org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory
-
Get an existing Connection or create and store a new one
- getConnection() - Method in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
- getConnTypeBySrcXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getConnTypeByStrXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getConstant() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the constant property.
- getConstant() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Gets the value of the constant property.
- getConsumer() - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getConsumer() - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getContent() - Method in class org.apache.ctakes.core.util.DocumentSection
-
- getContent() - Method in class org.apache.ctakes.coreference.type.Markable
-
getter for content - gets The markable instance, i.e., a Named Entity, pronoun Token, etc.
- getContent(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- getContentHandler() - Method in class org.apache.ctakes.core.cc.XMISerializer
-
- getContext() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getContextHit(List, int) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
- getContextMap(JCas, int, int) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
returns an empty map
Gets context for the specified window.
- getContextMap(JCas, int, int) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets context for the specified window.
- getContextMap(JCas, int, int) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
-
Gets context for the specified window.
- getContextMap(JCas, int, int) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets context for the specified window.
- getContextualAspect() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for contextualAspect - gets
- getContextualAspect(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getContextualModality() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for contextualModality - gets
- getContextualModality(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getContingencyTable() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getContractionTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
-
- getConverter() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getCoreferencePipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getCorpusCuiTuis(String, String, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getCorpusCuiTuis(String, String, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getCorpusIC() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- getCorpusLcs() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getCorpusLcsIC() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getCorpusLcsTerm() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getCorpusName() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getCosineSimilarity(String, String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex
-
Send two queries to the index.
- getCost() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getCount(String) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getCourse() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for course - gets
- getCourse(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getCourse() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for course - gets
- getCourse(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getCourse() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for course - gets
- getCourse(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getCourse() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for course - gets
- getCourse(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getCoveredText() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getCoveredTextColumn() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getCoveredTextMaxLen() - Method in class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- getCoveringClass() - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline1EntityMentionPairRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2DegreeOfRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline2EntityMentionPairRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3DegreeOfRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.baselines.Baseline4EntityMentionPairRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.CausesBringsAboutRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.ManagesTreatsRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.ManifestationOfRelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.F1BaselineEventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.PrecisionBaselineEventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventEventRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.RecallBaselineEventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.TimidBaselineEventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- getCoveringClass() - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- getCoveringSpan() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
- getCpostag() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for cpostag - gets
- getCpostag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getCR(File) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- getCrossValidationFold(String, String, String, int, int) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getCrossValidationFold(String, String, String, int, int) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getCrossValidationFoldId() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getCrossValidationFoldId() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getCsv() - Method in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
Gets the value of the csv property.
- getCsvItems(String) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- getCtakesClass(String) - Method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- getCtakesSemantics() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- getCtakesSemantics() - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- getCuePhrase() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
getter for cuePhrase - gets cue phrase itself (from lookup list)
- getCuePhrase(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- getCuePhraseAssertionFamily() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
getter for cuePhraseAssertionFamily - gets which assertion family this cue phrase belongs to (negation, uncertainty, or conditional)
- getCuePhraseAssertionFamily(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- getCuePhraseCategory() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
getter for cuePhraseCategory - gets
- getCuePhraseCategory(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- getCuePhraseFirstWord() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
getter for cuePhraseFirstWord - gets first word of cue phrase
- getCuePhraseFirstWord(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- getCui() - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory.CuiTuiTerm
-
- getCui() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- getCui() - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- getCui() - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.RareWordTermMapCreator.CuiTerm
-
- getCui() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
getter for cui - gets
- getCui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- getCui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getCui() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getCui1() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getCui2() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getCuiCode() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getCuiCode(String) - Method in enum org.apache.ctakes.dictionary.lookup2.util.CuiCodeUtil
-
- getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
-
- getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
-
- getCuiCode() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
-
- getCuiCode(String) - Method in enum org.apache.ctakes.gui.dictionary.umls.CuiCodeUtil
-
- getCuiCounts(String) - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getCuiCounts() - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getCuiCounts(JCas) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuiCounts(Collection<IdentifiedAnnotation>) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuis(String) - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getCuis() - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getCuis(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuis(JCas) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuis(JCas, T) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuis(Collection<IdentifiedAnnotation>) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getCuiText() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getCuiTuiMap() - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
cui - tui map.
- getCuiTuiMap() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getCuiTuiQuery() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- getCurrentCUI() - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
Gets the currently selected city.
- getCurrentCUI() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
Gets the currently selected city.
- getCurrentLineForeground() - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Gets the current line rendering Color
- getCustomizedDictionary(String) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer
-
Read comma separate file containing target CUIs.
- getCutoff() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- getCvf() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getCvf() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getDataFilePrefix(String, String, Integer, Integer, Boolean) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
construct file name for train/test set, will be like
label[label]_run[run]_fold[fold]_train
- getDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- getDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- getDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMUtilImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- getDataSource() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getDataSource() - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- getDataWriter(File, Class<? extends DataWriter<?>>) - Static method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- getDataWriterClass() - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- getDataWriterDescription(Class<? extends SequenceDataWriter<String>>, File) - Static method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- getDataWriterDescription(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- getDate() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
-
- getDate() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
getter for date - gets
- getDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- getDate() - Method in class org.apache.ctakes.ytex.uima.types.Date
-
getter for date - gets ISO 8601 Formatted Timestamp: yyyy-MM-dd'T'HH:mm:ssZ
- getDate(int) - Method in class org.apache.ctakes.ytex.uima.types.Date_Type
-
- getDateFrom() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getDateTo() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getDateValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
getter for dateValue - gets
- getDateValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
-
- getDay() - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
getter for day - gets
- getDay(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- getDbSchema() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getDbType() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getDeathDate() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for deathDate - gets
- getDeathDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getDeepDocumentId(JCas) - Static method in class org.apache.ctakes.core.util.DocumentIDAnnotationUtil
-
Gets the document Id by progressing through 3 layers until an Id is found: starting JCas, Initial View, Plaintext View
- getDefaultCasViewName() - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Gets the name of the CAS View that will be displayed first in
the annotation viewer.
- getDefaultConceptGraph() - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityRestService
-
- getDefaultConceptGraph() - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityWebService
-
- getDefaultConceptGraph() - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- getDefaultConceptGraphDir() - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
use value of org.apache.ctakes.ytex.conceptGraphDir if defined.
- getDefaultConceptGraphName() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- getDefaultCoreferencePipeline() - Static method in class org.apache.ctakes.coreference.factory.CoreferenceAnnotatorFactory
-
- getDefaultExclusions() - Static method in class org.apache.ctakes.gui.dictionary.umls.MrconsoParser
-
- getDefaultPipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getDefaultValue() - Method in enum org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser.ParseOption
-
- getDegree() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for degree - gets
- getDegree(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getDegree() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getDegree() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getDelegateKernel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- getDelegateKernel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NodeAttributeKernel
-
- getDelegateKernel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- getDelegateKernel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- getDelegateKernels() - Method in class org.apache.ctakes.ytex.kernel.evaluator.ProductKernel
-
- getDelegateKernels() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SumKernel
-
- getDelimiter() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the delimiter property.
- getDeltaFlag() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
getter for deltaFlag - gets
- getDeltaFlag(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- getDeltaFlag() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
getter for deltaFlag - gets
- getDeltaFlag(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- getDemCorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
-
- getDemographics() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
getter for demographics - gets
- getDemographics(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- getDependencyNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation
- getDependencyNodes(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Returns the ConllDependencyNodes in the CAS w/ subsumed begins and ends
- getDeprel() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for deprel - gets
- getDeprel(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getDepth() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- getDepth(String) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
- getDepth(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getDepth() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getDepthMax() - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- getDescription(Object...) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- getDescription(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- getDescription() - Static method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- getDescription() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
Parses and returns the descriptor for this collection reader.
- getDescription() - Method in enum org.apache.ctakes.gui.dictionary.umls.Tui
-
- getDescription() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getDescription(Object...) - Static method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
-
- getDescription() - Static method in class org.apache.ctakes.relationextractor.metastasis.MetastasisAnaforaXMLReader
-
- getDescription() - Static method in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- getDescription() - Static method in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.THYMEQAAnaforaXMLReader
-
- getDescription(File) - Static method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- getDescription(Class<?>...) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
-
- getDescription(Class<?>...) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromSystem
-
- getDescription() - Static method in class org.apache.ctakes.temporal.pipelines.EventPrintingPipeline.PrintEventAnnotations
-
- getDescription() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- getDescription() - Method in class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- getDescriptorURL() - Static method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
- getDevPatientSets(File) - Static method in class org.apache.ctakes.temporal.eval.I2B2Data
-
- getDevPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
-
- getDevRemainders() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getDevTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- getDialectClassName() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getDictionaries() - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
- getDictionaries() - Method in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
- getDictionaries() - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getDictionaries() - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getDictionary(String) - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getDictionary(String) - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getDictionary() - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
Initialize WordNet dictionary.
- getDictMetaDataHit() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
- getDigitAlignment() - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Gets the digit alignment
- getDimensionality() - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- getDisambiguated() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for disambiguated - gets Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, then the OntologyConcept with disambiguated=true is the most likely sense
- getDisambiguated(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for discoveryTechnique - gets
- getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for discoveryTechnique - gets
- getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getDiscoveryTechnique() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for discoveryTechnique - gets
- getDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getDistance(JCas, RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
Calculate the distance (in tokens) between two identified annotations.
- getDistance() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getDistributionFromScores(Map<X, Double>) - Static method in class org.apache.ctakes.temporal.utils.SoftMaxUtil
-
- getDocId(JCas) - Static method in class org.apache.ctakes.coreference.ae.features.UMLSFeatureExtractor
-
- getDocLengthMap() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getDocResultInstanceImporter() - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- getDocText() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getDocText() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getDocText() - Method in class org.apache.ctakes.ytex.web.search.FullTextDocumentViewBean
-
- getDocTimeRel() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for docTimeRel - gets
- getDocTimeRel(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getDocument(int) - Method in interface org.apache.ctakes.ytex.uima.dao.DocumentDao
-
Retrieve document by primary key
- getDocument(int) - Method in class org.apache.ctakes.ytex.uima.dao.DocumentDaoImpl
-
- getDocument() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getDocument() - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- getDocumentAnnotationID() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getDocumentAnnotations() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getDocumentById(JCas, Map<String, Object>) - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- getDocumentClasses() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getDocumentClasses() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getDocumentClassID() - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- getDocumentDate() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getDocumentID(JCas) - Static method in class org.apache.ctakes.core.util.DocumentIDAnnotationUtil
-
Check the jcas for a document id.
- getDocumentID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
getter for documentID - gets
- getDocumentID(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
-
- getDocumentID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID
-
getter for documentID - gets
- getDocumentID(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
-
- getDocumentID() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getDocumentID() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getDocumentID() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getDocumentID() - Method in class org.apache.ctakes.ytex.web.search.FullTextDocumentViewBean
-
- getDocumentIdForFile(JCas) - Static method in class org.apache.ctakes.core.util.DocumentIDAnnotationUtil
-
Create a unique id for the document that can be used for an output filename or url.
- getDocumentIdPrefix() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
getter for documentIdPrefix - gets
- getDocumentIdPrefix(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type
-
- getDocumentIds() - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getDocumentIds() - Method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
- getDocumentPath() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
getter for documentPath - gets
- getDocumentPath(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentPath_Type
-
- getDocumentSearchService() - Method in class org.apache.ctakes.ytex.web.search.FullTextDocumentViewBean
-
- getDocumentSearchService() - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- getDocumentSearchService() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getDocumentStandard() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for documentStandard - gets
- getDocumentStandard(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getDocumentTitle() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getDocumentTypeName() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getDosage() - Method in class org.apache.ctakes.drugner.elements.DosageElement
-
- getDosage() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for dosage - gets Dosage refers to how many of each drug the patient is taking.
- getDosage(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDosageBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDosageBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for dosageBegin - gets
- getDosageBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDosageElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDosageElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getDosageEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDosageEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for dosageEnd - gets
- getDosageEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDoubleProperty(Properties, String, Double) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- getDriver() - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Gets the value of the driver property.
- getDrug() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
getter for drug - gets
- getDrug(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- getDrugChangeStatus() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for drugChangeStatus - gets Status refers to the whether the medication is currently being taken or not.
- getDrugChangeStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDrugChangeStatusElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDrugChangeStatusElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getDrugsInSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return the List of drug IdentifiedAnnotation within the span
- getDuratationBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDuratationEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDuration() - Method in class org.apache.ctakes.drugner.elements.DurationElement
-
- getDuration() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for duration - gets Duration refers to for how long the patient is expected to take the drug.
- getDuration(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for duration - gets
- getDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getDurationBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for durationBegin - gets
- getDurationBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getDurationElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getDurationElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getDurationEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for durationEnd - gets
- getDurationEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getElementAt(int) - Method in class org.apache.ctakes.gui.pipeline.bit.available.AvailablesListModel
- getElementAt(int) - Method in class org.apache.ctakes.gui.pipeline.bit.info.TypeProductListModel
- getElementAt(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
- getEmbeddings() - Method in class org.apache.ctakes.utils.distsem.WordVectorReader
-
- getEmbeddings(String) - Static method in class org.apache.ctakes.utils.distsem.WordVectorReader
-
- getEmbeddings(InputStream) - Static method in class org.apache.ctakes.utils.distsem.WordVectorReader
-
- getEmbeddingsDimensionality() - Method in class org.apache.ctakes.core.cleartk.ContinuousTextExtractor
-
- getEmptyDocument() - Static method in class org.apache.ctakes.jdl.data.xml.DomUtil
-
- getEmptyString() - Static method in class org.apache.ctakes.ytex.dao.DBUtil
-
- getEncapsulator() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the encapsulator property.
- getEnclosingNP(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander
-
- getEncounterNum(SourceData) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
- getEnd() - Method in class org.apache.ctakes.assertion.stub.Annotation
-
- getEnd() - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- getEnd() - Method in class org.apache.ctakes.assertion.stub.LineTokenToCharacterOffsetConverter.BeginAndEndCharacterOffsetPair
-
- getEnd() - Method in class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
- getEnd() - Method in interface org.apache.ctakes.core.cc.pretty.textspan.TextSpan
-
- getEnd() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
- getEnd() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
- getEnd() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
- getEnd() - Method in interface org.apache.ctakes.dictionary.lookup2.textspan.TextSpan
-
- getEnd() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getEnd() - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator.NegSpan
-
- getEnd() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- getEnd() - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- getEnd() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getEndDate() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for endDate - gets
- getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getEndDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for endDate - gets
- getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getEndDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for endDate - gets
- getEndDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getEndDateElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getEndDateElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getEndLine() - Method in class org.apache.ctakes.core.util.DocumentSection
-
- getEndOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter
-
- getEndOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl
-
- getEndOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter
-
- getEndOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken
-
- getEndOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Gets the end offset.
- getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Gets the end offset.
- getEndOffset() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Gets the end offset.
- getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- getEndOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedCodeElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedPrimaryCodeElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.AssociatedSecondaryCodeElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.ConfidenceScoreElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DosageElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.DurationElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FormElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.RouteElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StartDateElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
-
- getEndOffset() - Method in class org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl
-
- getEndOffset() - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- getEndOfSentenceCharacters() - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getEndTime() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for endTime - gets
- getEndTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getEntities(String) - Method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
- getEntity() - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
getter for entity - gets
- getEntity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
-
- getEntityAttributes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
Attribute mention IDs of each named entity, indexed on mention ids
Filter based on entity types, so non-NE get left out.
- getEntityFeats(JCas, IdentifiedAnnotation, Sentence) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SRLFeatureExtractor
-
- getEntityMentions(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
Get spans of named entity annotations indexed on knowtator mention id
- getEntityMentions(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader
-
Get spans of named entity annotations indexed on knowtator mention id
- getEntityStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats
-
- getEntityTypeId(String) - Static method in class org.apache.ctakes.core.util.Mapper
-
Map entity type to its integer id.
- getEntityTypes(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
Type of each named entity indexed on mention ids
- getEntityTypes(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader
-
Type of each named entity indexed on mention ids
- getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl
-
Deprecated.
- getEntries(String) - Method in interface org.apache.ctakes.dictionary.lookup.Dictionary
-
Gets any meta data entries associated with the specified input text.
- getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.jdbc.JdbcDictionaryImpl
-
Gets any meta data entries associated with the specified input text.
- getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl
-
Gets any meta data entries associated with the specified input text.
- getEntries(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl
-
Gets any meta data entries associated with the specified input text.
- getEntropyX() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getEntropyXY() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getEnv(String, UimaContext) - Static method in class org.apache.ctakes.utils.env.EnvironmentVariable
-
Get the value of some variable in the full (os, user, java, ctakes) environment.
- getEnv(String) - Static method in class org.apache.ctakes.utils.env.EnvironmentVariable
-
Get the value of some variable in the full (os, user, java, ctakes) environment.
- getError() - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- getEscapeBegin() - Static method in class org.apache.ctakes.ytex.dao.DBUtil
-
- getEscapeEnd() - Static method in class org.apache.ctakes.ytex.dao.DBUtil
-
- getEvaluation() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- getEvaluationType() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getEvaluteOn() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions
-
- getEvent() - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention
-
getter for event - gets
- getEvent(int) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
-
- getEventContext(JCas, Sentence, EventMention, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.DtrRelPrinter
-
Print context from left to right.
- getEventEventPositionContext(JCas, Sentence, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
Position features for event-event relations
- getEventPosContext(JCas, Sentence, EventMention, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.DtrRelPrinter
-
Print context from left to right.
- getEventTimePositionContext(JCas, Sentence, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
Position features for event-time relations
- getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for exacerbatingFactor - gets
- getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for exacerbatingFactor - gets
- getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for exacerbatingFactor - gets
- getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getExacerbatingFactor() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for exacerbatingFactor - gets
- getExacerbatingFactor(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getExpandEvents() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getExperiment() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getExperiment() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getExperiment() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getExportType() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getExternalId() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
getter for externalId - gets
- getExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- getExternalId() - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- getF1() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getF1() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getFastPipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getFastPipeline() - Static method in class org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase
-
- getFeats() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for feats - gets
- getFeats(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getFeature() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
getter for feature - gets
- getFeature(int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
- getFeature() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- getFeatureEval() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- getFeatureEvaluationId() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getFeatureExtractors() - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
Defines the list of feature extractors used by the classifier.
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- getFeatureExtractors() - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
Defines the list of feature extractors used by the classifier.
- getFeatureName(Feature) - Method in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- getFeatureName() - Method in class org.apache.ctakes.core.cleartk.ContinuousTextExtractor
-
- getFeatureName() - Method in class org.apache.ctakes.coreference.extractors.ContinuousTextExtractor
-
- getFeatureName() - Method in class org.apache.ctakes.temporal.ae.feature.ContinuousTextExtractor
-
- getFeatureName(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- getFeatureName(Feature) - Method in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- getFeatureName() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- getFeatureParentChildId() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- getFeatureRankChild() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- getFeatureRankEvaluations(String, String, String, String, Integer, double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getFeatureRankEvaluations(Set<String>, String, String, String, String, Integer, double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getFeatureRankEvaluations(Set<String>, String, String, String, String, Integer, double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getFeatureRankEvaluations(String, String, String, String, Integer, double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getFeatureRankId() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- getFeatureRankParent() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- getFeatureRanks(Set<String>, String, String, String, String, Integer, double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getFeatureRanks(Set<String>, String, String, String, String, Integer, double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getFeatures() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
getter for features - gets
- getFeatures(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
indexed getter for features - gets an indexed value -
- getFeatures(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- getFeatures(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- getFeatureSetName() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getFeatureStructureAtIndex(JCas, Class<T>, int) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- getFeatureStructureSize(JCas, Class<T>) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- getFieldIndex() - Method in interface org.apache.ctakes.core.cc.AbstractJdbcWriter.FieldInfo
-
- getFieldIndex() - Method in enum org.apache.ctakes.core.cc.JdbcWriterTemplate.I2b2FieldInfo
-
- getFieldInfos() - Method in interface org.apache.ctakes.core.cc.AbstractJdbcWriter.TableInfo
-
- getFieldName() - Method in interface org.apache.ctakes.core.cc.AbstractJdbcWriter.FieldInfo
-
- getFieldName() - Method in enum org.apache.ctakes.core.cc.JdbcWriterTemplate.I2b2FieldInfo
-
- getFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
-
- getFile() - Method in interface org.apache.ctakes.core.resource.FileResource
-
- getFile() - Method in class org.apache.ctakes.core.resource.FileResourceImpl
-
- getFile(String) - Static method in class org.apache.ctakes.jdl.common.FileUtil
-
- getFileBaseName(Properties) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- getFileChooser() - Method in class org.apache.ctakes.gui.component.FileTableCellEditor
-
- getFileInExistingDir(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
- getFileInExistingDir(String) - Static method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- getFileName() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- getFilePath() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperInfo
-
- getFilesFor(List<Integer>, File) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Get files for specific sets of patients.
- getFilesFor(List<Integer>, File) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
-
- getFirstChildByName(Node, String) - Static method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Gets the first child with a given name.
- getFirstChildByName(Node, String) - Static method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Gets the first child with a given name.
- getFirstName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for firstName - gets
- getFirstName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getFirstNameSoundex() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for firstNameSoundex - gets
- getFirstNameSoundex(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getFn() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getFn() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getFocusText() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
getter for FocusText - gets
- getFocusText(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
- getFold() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getFold() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getFoldFilePrefix(String, String, Integer, Integer) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
construct file name with label, run, fold with format
label[label]_run[run]_fold[fold]_ only put in the non-null
pieces.
- getFoldGenerator() - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- getFoldId() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getFoldId() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getForClass(Class<? extends TOP>) - Static method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.TypeProduct
-
- getForm() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for form - gets Form refers to the physical appearance of the drug.
- getForm(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getForm() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for form - gets
- getForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getFormat() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the format property.
- getFormattedTexts(String, boolean, int, int, int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- getFormatter() - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory
-
- getFormatter() - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory
-
- getFormBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFormBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for formBegin - gets
- getFormBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFormElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFormElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getFormEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFormEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for formEnd - gets
- getFormEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFormMention() - Method in class org.apache.ctakes.drugner.elements.FormElement
-
- getFormMethod() - Method in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- getFp() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getFp() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getFrameSet() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
getter for frameSet - gets
- getFrameSet(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
- getFreqQuery() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getFrequencies(String) - Method in interface org.apache.ctakes.ytex.kernel.InfoContentEvaluator
-
- getFrequencies(String) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
get the frequency of each term in the corpus.
- getFrequency() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for frequency - gets Frequency refers to how often the patient needs to take the drug.
- getFrequency(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFrequencyBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFrequencyBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for frequencyBegin - gets
- getFrequencyBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFrequencyElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFrequencyElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getFrequencyEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFrequencyEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for frequencyEnd - gets
- getFrequencyEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFrequencyMention() - Method in class org.apache.ctakes.drugner.elements.FrequencyElement
-
- getFrequencyUnit() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for frequencyUnit - gets
- getFrequencyUnit(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFrequencyUnitElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFrequencyUnitElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getFrequencyUnitMention() - Method in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- getFrequencyUnitQuantity() - Method in class org.apache.ctakes.drugner.fsm.output.elements.FrequencyUnitToken
-
- getFs() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- getFstem() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- getFUBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFuBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for fuBegin - gets
- getFuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFUENd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getFuEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for fuEnd - gets
- getFuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getFullPath(String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
Attempts to discover the real location of a file pointed to by relativePath.
- getFullPath(Class<?>, String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
Attempts to discover the real location of a file pointed to by relativePath.
- getFullPathQuiet(String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
QUIETLY Attempts to discover the real location of a file pointed to by relativePath.
- getFullPathQuiet(Class<?>, String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
QUIETLY Attempts to discover the real location of a file pointed to by relativePath.
- getFullTextSearchDocument(int) - Method in interface org.apache.ctakes.ytex.web.search.DocumentSearchService
-
retrieve note for specified document id, retrieved via full text search
- getFullTextSearchDocument(int) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
retrieve note for specified document id, retrieved via full text search
- getFword() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- getFword() - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- getGamma() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getGamma() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getGender(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- getGender() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for gender - gets
- getGender(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getGenerateXMI() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options
-
- getGeneric(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
-
- getGeneric() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for generic - gets
- getGeneric(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getGeneric() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for generic - gets
- getGeneric(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- getGoldAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- getGrid() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getGridSearch() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions
-
- getHead(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getHead(TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
-
- getHead() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for head - gets
- getHead(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getHeadIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for headIndex - gets The head index tracks the index into the word tokens which is the syntactic head of a phrase.
- getHeadIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getHeadWord(String) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
A simple way to get the head word of a phrase.
- getHeadwordMatchingPairs(JCas, Annotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getHeadwordMatchPairs(JCas, IdentifiedAnnotation, int) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getHeight() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
- getHeight() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- getHeight() - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- getHeight() - Method in interface org.apache.ctakes.core.cc.pretty.cell.ItemCell
-
- getHeight() - Method in class org.apache.ctakes.core.cc.pretty.cell.TimexCell
- getHeight() - Method in class org.apache.ctakes.core.cc.pretty.row.DefaultItemRow
- getHeight() - Method in interface org.apache.ctakes.core.cc.pretty.row.ItemRow
-
- getHighestIndexTerm(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getHistory(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
-
- getHistoryOf() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
-
- getHistoryOf() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for historyOf - gets
- getHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getHistoryOf() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for historyOf - gets
- getHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getHyperHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
- getHypernyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
Retrieve a set of hypernyms for a word.
- getI2B2Output() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getIC(String, boolean) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
- getIC(String, boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getIcon(PipeBitInfo.TypeProduct) - Method in enum org.apache.ctakes.gui.pipeline.bit.info.ProductIconFactory
-
- getId() - Method in class org.apache.ctakes.coreference.type.Markable
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for id - gets The token's position in the sentence.
- getId(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.textspan.List
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
-
- getId() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
-
getter for id - gets
- getId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
- getIdfMap() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getIgnoreImpossibleGoldRelations() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getImputedFeaturesByPropagatedCutoff(String, String, String, String, String, String, int) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getImputedFeaturesByPropagatedCutoff(String, String, String, String, String, String, int) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getImputeWeight() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
getter for index - gets The index of this node in the top node's list of terminals.
- getIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
- getIndex() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- getIndexAfterLastNonDigit(String) - Static method in class org.apache.ctakes.core.util.DateParser
-
- getIndexedRareWord(String, Map<String, Long>) - Static method in class org.apache.ctakes.gui.dictionary.util.RareWordUtil
-
- getIndexFirstNonLetter(String) - Static method in class org.apache.ctakes.core.util.DateParser
-
- getIndexReader() - Method in interface org.apache.ctakes.core.resource.LuceneIndexReaderResource
-
- getIndexReader() - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
-
- getIndicated() - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
getter for indicated - gets
- getIndicated(int) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
-
- getInfo(Class<?>) - Static method in class org.apache.ctakes.core.pipeline.PipeBitInfoUtil
-
- getInfoContent(String, String, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getInfoContent(String, String, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getInfoContentEvaluator() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getInfoGain() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getInputDirectory() - Method in interface org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase.Options
-
- getInputDirectory() - Method in class org.mitre.medfacts.uima.RunZoner
-
- getInputFiles() - Method in class org.mitre.medfacts.uima.RunZoner
-
- getInstance() - Static method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- getInstance() - Static method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
- getInstance() - Static method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
- getInstance() - Static method in enum org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator
-
- getInstance() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.CuiCodeUtil
-
- getInstance() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory
-
- getInstance() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
- getInstance() - Static method in class org.apache.ctakes.gui.action.GlobalHotKeyManager
-
- getInstance() - Static method in class org.apache.ctakes.gui.component.DisablerPane
-
- getInstance() - Static method in enum org.apache.ctakes.gui.dictionary.umls.CuiCodeUtil
-
- getInstance() - Static method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- getInstance() - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoComparator
-
- getInstance() - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.ProductIconFactory
-
- getInstance() - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitFinder
-
- getInstance() - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
- getInstanceDataExporter() - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- getInstanceDataExporter() - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- getInstanceId() - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- getInstanceId() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- getInstanceId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getInstanceId() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- getInstanceID() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getInstanceId1() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- getInstanceId2() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- getInstanceIDField() - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- getInstanceIDQuery() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getInstanceIds() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getInstanceIds() - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- getInstanceKernel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getInstanceKey() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- getInstanceNominalWords() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getInstanceNominalWords() - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- getInstanceNum(SourceData) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
- getInstanceNumericWords() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getInstanceNumericWords() - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- getInstanceQueryMappingInfo() - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- getInstances(String, String) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getInstances(String, BagOfWordsData) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- getInstanceTreeBuilder() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getIntakeMethod() - Method in class org.apache.ctakes.drugner.type.RouteAnnotation
-
getter for intakeMethod - gets Means by which the drug was taken.
- getIntakeMethod(int) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
-
- getIntAsTuis(Collection<Integer>) - Static method in class org.apache.ctakes.dictionary.lookup2.util.TuiCodeUtil
-
- getIntegerProperty(Properties, String, Integer) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- getIntrinsicIC() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- getIntrinsicICMax() - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- getIntrinsicInfoContent(String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getIntrinsicInfoContent(String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getIntrinsicInfoContent() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getIntrinsicInfoContentEvaluator() - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- getIntrinsicLcs() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getIntrinsicLcsIC() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getIntrinsicLcsTerm() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getIntValue() - Method in enum org.apache.ctakes.gui.dictionary.umls.Tui
-
- getIrClass() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getIrClassId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getIspref() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getIstance() - Static method in class org.apache.ctakes.jdl.common.Singleton
-
- getItemCells() - Method in class org.apache.ctakes.core.cc.pretty.row.DefaultItemRow
- getItemCells() - Method in interface org.apache.ctakes.core.cc.pretty.row.ItemRow
-
- getItems() - Method in class org.apache.ctakes.typesystem.type.textspan.List
-
getter for items - gets
- getItems(int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
-
- getJavaClassPaths() - Static method in class org.apache.ctakes.jdl.common.FileUtil
-
- getJcas() - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- getJcas() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- getJcas() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- getJCasViewWithDefault(CAS, String) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
helper to look for plain text view for CDA processing or else use the default view.
- getJdbc() - Method in class org.apache.ctakes.jdl.schema.xdl.ConnType
-
Gets the value of the jdbc property.
- getJdbcClass(String) - Method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- getJdbcTypeBySrcXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getJdbcTypeByStrXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getJxpath() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getKernel(KernelEvaluation, long, long) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- getKernel(KernelEvaluation, long, long) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getKernel() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getKernelEval(String, String, String, int, double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- getKernelEval(String, String, String, int, double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getKernelEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getKernelEvaluationDao() - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- getKernelEvaluationDao() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- getKernelEvaluationDao() - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- getKernelEvaluationDao() - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- getKernelEvaluationId() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getKernelEvaluationId() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- getKernelParams() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- getKernelUtil() - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory
-
- getKey(JCas) - Static method in class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator
-
- getKey() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
getter for key - gets
- getKey(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
- getKey() - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
getter for key - gets
- getKey(int) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- getKeysSortedByValue() - Method in class org.apache.ctakes.utils.struct.CounterMap
-
- getKeyValuePairs() - Method in class org.apache.ctakes.ytex.uima.types.DocKey
-
getter for keyValuePairs - gets
- getKeyValuePairs(int) - Method in class org.apache.ctakes.ytex.uima.types.DocKey
-
indexed getter for keyValuePairs - gets an indexed value -
- getKeyValuePairs(int) - Method in class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
- getKeyValuePairs(int, int) - Method in class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
- getKnowtatorURI(JCas) - Method in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
Get the URI for the Knowtator XML file that should be loaded
- getKnowtatorURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
Get the URI for the Knowtator XML file that should be loaded
- getKnowtatorURI(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Heading
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Heading_Type
-
- getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Subzone
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone_Type
-
- getLabel() - Method in class org.apache.ctakes.assertion.zoner.types.Zone
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.assertion.zoner.types.Zone_Type
-
- getLabel() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
- getLabel() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
- getLabel() - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
getter for label - gets Is this pair coreferent?
- getLabel(int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- getLabel() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
-
- getLabel() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
getter for label - gets
- getLabel(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getLabel() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getLabelQuery() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getLabelToClassMap() - Method in class org.apache.ctakes.ytex.kernel.InstanceData
-
- getLabelToInstanceMap() - Method in class org.apache.ctakes.ytex.kernel.InstanceData
-
- getLabValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
getter for labValue - gets
- getLabValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- getLabValue() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
getter for labValue - gets
- getLabValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- getLambda() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getLastAui() - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
Get the 'last' UmlsAuiFirstWord.
- getLastAui() - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- getLastName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for lastName - gets
- getLastName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getLastNameSoundex() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for lastNameSoundex - gets
- getLastNameSoundex(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getLastWord(JCas, Annotation) - Static method in class org.apache.ctakes.relationextractor.data.analysis.Utils
-
Given an annotation, retrieve its last word.
- getLat() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getLCA(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- getLCS(String, String, Set<String>, List<LCSPath>) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
get the lcs(s) for the specified concepts
- getLCS(String, String, Set<String>, List<LCSPath>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getLcs() - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- getLcsCache() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getLcsDist() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getLcses() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getLcsImputedType() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getLcsPathMap() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getLcsPaths() - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- getLeaf() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for leaf - gets
- getLeaf(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getLeafCount() - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- getLeastCommonConcept(ConcRel, ConcRel) - Static method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
Deprecated.
- getLeastCommonConcept(ConcRel, ConcRel, Set<ConcRel>, Map<ConcRel, LCSPath>) - Static method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getLeftScopeContextAnnotations(JCas, Annotation, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- getLeftSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getLeftSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getLegacyCoreferencePipeline() - Static method in class org.apache.ctakes.coreference.factory.CoreferenceAnnotatorFactory
-
- getLemma() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for lemma - gets
- getLemma(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getLemmaEntries() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
getter for lemmaEntries - gets
- getLemmaEntries(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- getLength() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Gets the length of this annotation based on offsets.
- getLength() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Gets the length of this annotation based on offsets.
- getLength() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- getLength() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
- getLength() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
-
return the length of the full span minus the lengths of the missing spans
- getLength() - Method in interface org.apache.ctakes.dictionary.lookup2.textspan.TextSpan
-
- getLength() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getLength() - Method in class org.apache.ctakes.utils.distsem.WordVector
-
- getLength() - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- getLengthIfNextApostIsMiddleOfContraction(int, int, String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
-
Determine if the text starting at 'position' within 'text' is the start of a
contraction such as "should've" or "hasn't" or "it's" by looking at whether
there is a letter before the apostrophe, and the appropriate letters after the
apostrophe (or in the case of "n't", verify the letter before is an 'n'
Note that if the text starting at 'position' is something like "n't" which
isn't a complete word, returns null.
- getLibsvmUtil() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- getLightweightPreprocessorAggregateBuilder() - Static method in class org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase
-
- getLine() - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- getLinearPermutations(List<Integer>) - Static method in class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil
-
Gets a collection of lists, each list represents a single permutation.
- getLineText(int) - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
- getLineText(int) - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- getLineText(int) - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- getLineText(int) - Method in interface org.apache.ctakes.core.cc.pretty.cell.ItemCell
-
- getLineText(int) - Method in class org.apache.ctakes.core.cc.pretty.cell.TimexCell
- getList() - Method in class org.apache.ctakes.temporal.eval.CommandLine.IntegerRanges
-
- getList() - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
The list of possible matches for the given SelectInputText value
- getList() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
The list of possible matches for the given SelectInputText value
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.available.AvailablesRenderer
-
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.BitCellRenderer
-
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoRenderer
-
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.info.RoleRenderer
-
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.info.TypeProductRenderer
-
- getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitRenderer
-
- getLoadTypeBySrcXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getLoadTypeByStrXml(String) - Static method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryUtil
-
- getLookupAlgorithm(DictionaryEngine) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
Gets the LookupAlgorithm to be used to perform the lookup operations.
- getLookupAlgorithm(DictionaryEngine) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets the LookupAlgorithm to be used to perform the lookup operations.
- getLookupAlgorithm(DictionaryEngine) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
-
Gets the LookupAlgorithm to be used to perform the lookup operations.
- getLookupAlgorithm() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
-
- getLookupAlgorithm(DictionaryEngine) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets the LookupAlgorithm to be used to perform the lookup operations.
- getLookupConsumer() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
-
- getLookupInitializer() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
-
- getLookupTokenIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
Gets an iteration of tokens that represent the finest grain used for a
lookup operation.
- getLookupTokenIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets an iteration of tokens that represent the finest grain used for a
lookup operation.
- getLookupTokenIterator(JCas) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
-
Gets an iteration of tokens that represent the finest grain used for a
lookup operation.
- getLookupTokenIterator(JCas) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets an iteration of tokens that represent the finest grain used for a
lookup operation.
- getLookupWindowIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
Gets an iteration of windows.
- getLookupWindowIterator(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets an iteration of windows.
- getLookupWindowIterator(JCas) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
-
Gets an iteration of windows.
- getLookupWindowIterator(JCas) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets an iteration of windows.
- getLui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getLvg() - Method in interface org.apache.ctakes.lvg.resource.LvgCmdApiResource
-
- getLvg() - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl
-
An LvgCmdApi takes a term from the input and returns a vector of strings.
- getLvgLex() - Method in interface org.apache.ctakes.lvg.resource.LvgCmdApiResource
-
- getLvgLex() - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl
-
The thing to run through Lvg
- getMainSem(int) - Static method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- getMap() - Method in interface org.apache.ctakes.core.resource.StringIntegerMapResource
-
Gets a map of the String/Integer values.
- getMap() - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl
-
Gets a map of the String/Integer values.
- getMap() - Method in interface org.apache.ctakes.core.resource.StringMapResource
-
Gets a map of String/String values.
- getMap() - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl
-
Gets a map of the String/Integer values.
- getMapAnnoMappingInfo() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getMapField() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getMapIndexWeight() - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- getMarkablePairScores(JCas) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- getMarkablePairScores(JCas) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getMaxDepth(String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getMaxDepth(String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getMaxFeatureEvaluation(String, String, String, String, Integer, double, String) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getMaxFeatureEvaluation(String, String, String, String, Integer, double, String) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getMaxID() - Method in class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- getMaxSizeList() - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
-
Get the maximum list size to be returned from a lucene index
- getMean() - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
- getMeanVector() - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- getMeasure() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getMedicationAllergy() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationAllergy - gets
- getMedicationAllergy(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationDosage - gets
- getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationDosage - gets
- getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationDosage() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationDosage - gets
- getMedicationDosage(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationDuration - gets
- getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationDuration - gets
- getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationDuration() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationDuration - gets
- getMedicationDuration(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationForm - gets
- getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationForm - gets
- getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationForm() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationForm - gets
- getMedicationForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationFrequency - gets
- getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationFrequency - gets
- getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationFrequency() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationFrequency - gets
- getMedicationFrequency(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationRoute - gets
- getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationRoute - gets
- getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationRoute() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationRoute - gets
- getMedicationRoute(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationStatusChange - gets
- getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationStatusChange - gets
- getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationStatusChange() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationStatusChange - gets
- getMedicationStatusChange(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for medicationStrength - gets
- getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for medicationStrength - gets
- getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getMedicationStrength() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for medicationStrength - gets
- getMedicationStrength(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getMembers() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
getter for members - gets A super-type for relationships between multiple spans of text.
- getMembers(int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
-
- getMention() - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- getMention() - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair
-
- getMention() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
getter for mention - gets
- getMention(int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
- getMentionClusterCoreferenceDescription() - Static method in class org.apache.ctakes.coreference.factory.CoreferenceAnnotatorFactory
-
- getMentionClusterResolverDescription() - Static method in class org.apache.ctakes.coreference.factory.CoreferenceAnnotatorFactory
-
- getMentionExtractors() - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- getMentionExtractors() - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getMentions() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for mentions - gets
- getMentions(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
indexed getter for mentions - gets an indexed value -
- getMentions(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getMentions(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getMetaData(Object) - Method in class org.apache.ctakes.necontexts.ContextHit
-
- getMetaData() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Gets a map of meta data about the document.
- getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.AbstractBaseDictionary
-
TODO - get rid of the using class iterators and use Collection foreach
- getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.BaseDictionaryImpl
-
Deprecated.
- getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
- getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
- getMetaFieldNames() - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
-
- getMetaFieldNames() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
- getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
- getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
- getMetaFieldValue(String) - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
-
- getMetaFieldValue(String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
- getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.GenericMetaDataHitImpl
- getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
- getMetaFieldValues() - Method in interface org.apache.ctakes.dictionary.lookup.MetaDataHit
-
- getMetaFieldValues() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
- getMethod() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for method - gets
- getMethod(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getMethod() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for method - gets
- getMethod(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getMethodName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- getMetricNames() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- getMetrics() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getMetricSelectCorpusIC() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getMetricSelectIntrinsicIC() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getMetricSelectTaxonomy() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getMiddleName() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
getter for middleName - gets
- getMiddleName(int) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- getMiddleScopeContextAnnotations(JCas, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- getMinimumDisplayDigits() - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Gets the minimum display digits
- getMinInfo() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getMissingSpans() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
-
- getMode() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- getModel() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getModifierTypeId(String) - Static method in class org.apache.ctakes.core.util.Mapper
-
Map modifier type to its integer id.
- getMonth() - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
getter for month - gets
- getMonth(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- getMostRecent(NonEmptyFSList, Annotation) - Static method in class org.apache.ctakes.coreference.util.ClusterUtils
-
- getMu() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getMutualInformation(double) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
- getName() - Method in enum org.apache.ctakes.core.cc.pretty.SemanticGroup
-
- getName() - Method in class org.apache.ctakes.core.cleartk.MaxContext
-
- getName() - Method in class org.apache.ctakes.core.cleartk.MinContext
-
- getName() - Method in class org.apache.ctakes.core.cleartk.SumContext
-
- getName(Class<?>) - Static method in class org.apache.ctakes.core.pipeline.PipeBitInfoUtil
-
- getName() - Method in class org.apache.ctakes.coreference.extractors.ContinuousBag
-
- getName() - Method in class org.apache.ctakes.coreference.extractors.ContinuousBag.Surrounding
-
- getName() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.concept.AbstractConceptFactory
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.ConceptFactory
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.concept.UmlsJdbcConceptFactory
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.AbstractRareWordDictionary
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.BsvRareWordDictionary
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in interface org.apache.ctakes.dictionary.lookup2.dictionary.RareWordDictionary
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
-
The Type identifier and Name are used to maintain a collection of dictionaries,
so the combination of Type and Name should be unique for each dictionary if possible.
- getName() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the name property.
- getName() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Gets the value of the name property.
- getName() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getName() - Method in enum org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator.MeasureType
-
- getName() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getNamedEntityRegexID() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getNamedEntityRegexs() - Method in interface org.apache.ctakes.ytex.uima.dao.NamedEntityRegexDao
-
- getNamedEntityRegexs() - Method in class org.apache.ctakes.ytex.uima.dao.NamedEntityRegexDaoImpl
-
- getNameLabelPrefix() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getNameLabelPrefix() - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- getNameLabelPrefix() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- getNames() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
-
- getNames(List<String>) - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
- getNames(List<String>) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- getNameToFormatterMap() - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getNameToParserMap() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
- getNECorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
-
- getNegationStatus() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getNegationTree(JCas, IdentifiedAnnotation, SemanticClasses) - Static method in class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation
-
- getNewEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification
-
- getNewStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification
-
- getNewText() - Method in class org.apache.ctakes.core.ci.TextModification
-
- getNext(CAS) - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- getNext(CAS) - Method in class org.apache.ctakes.assertion.cr.NegExCorpusReader
-
Does more than a typical reader - also creates an IdentifiedAnnotation
and a DocumentID annotation
- getNext(CAS) - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
- getNext(JCas) - Method in class org.apache.ctakes.assertion.eval.XMIReader
-
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- getNext(JCas) - Method in class org.apache.ctakes.core.cr.FileTreeReader
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- getNext(JCas) - Method in class org.apache.ctakes.core.cr.TextReader
-
- getNext(CAS) - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
- getNext(JCas) - Method in class org.apache.ctakes.core.cr.XMIReader
-
- getNext(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
-
- getNext(CAS) - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
Some of the code in this method is based loosely on
opennlp.tools.postag.POSEventCollector
- getNext(CAS) - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
Some of the code in this method is based loosely on
opennlp.tools.postag.POSEventCollector
- getNext(JCas) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
-
- getNext(CAS) - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- getNext(JCas) - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- getNextNonEOLToken(FSIterator<Annotation>) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- getNextState(JCas, AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe.State, BaseToken) - Method in class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe
-
- getNGrams() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- getNodeFeatures(Markable, Markable, JCas) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
-
- getNodeFeatures(Markable, Markable, JCas, boolean) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
-
- getNodeIndex() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getNodeList(TopTreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getNodeList(Parse) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getNodeQueryMappingInfos() - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- getNodes(String) - Static method in class org.apache.ctakes.coreference.util.SvmUtils
-
- getNodeTags() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for nodeTags - gets
- getNodeTags(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
indexed getter for nodeTags - gets an indexed value -
- getNodeTags(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getNodeTags(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getNodeType() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for nodeType - gets
- getNodeType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getNodeType() - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- getNodeType() - Method in class org.apache.ctakes.ytex.kernel.tree.NodeMappingInfo
-
- getNodeTypes() - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- getNodeValue() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for nodeValue - gets
- getNodeValue(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getNominalHeadNode(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Returns the first ConllDependencyNode in the CAS w/ same begin and end as the given Annotation
- getNominalHeadNode(List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Finds the head node out of a few ConllDependencyNodes.
- getNominalInstanceWords(String, BagOfWordsData) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- getNominalInstanceWords(String, String, String, SparseData, Map<String, Object>) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getNominalValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
-
getter for nominalValue - gets
- getNominalValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
-
- getNominalWordValueMap() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getNominalWordValueMap() - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- getNonRxnormExclusions() - Static method in class org.apache.ctakes.gui.dictionary.umls.MrconsoParser
-
- getNorm(KernelEvaluation, long) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- getNorm(KernelEvaluation, long) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getNorm(Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
compute the norm.
- getNorm() - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.refsem.Time
-
getter for normalizedForm - gets
- getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type
-
- getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
getter for normalizedForm - gets
- getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- getNormalizedForm() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
getter for normalizedForm - gets
- getNormalizedForm(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
- getNoteSubTypeCode() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for noteSubTypeCode - gets
- getNoteSubTypeCode(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getNoteTypeCode() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for noteTypeCode - gets
- getNoteTypeCode(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getNounPhrases(JCas, Sentence) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
Get all noun phrases in a sentence.
- getNpChunkerPipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getNpv() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
getter for number - gets
- getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
- getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
getter for number - gets
- getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
- getNumber() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
getter for number - gets
- getNumber(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
- getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Gets the total number of documents that will be returned by this
collection reader.
- getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
Gets the total number of documents that will be returned by this
collection reader.
- getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.FileTreeReader
-
Gets the total number of documents that will be returned by this
collection reader.
- getNumberOfDocuments() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
Gets the total number of documents that will be returned by this
collection reader.
- getNumDemFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- getNumericInstanceWords(String, BagOfWordsData) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- getNumericInstanceWords(String, String, String, SparseData, Map<String, Object>) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getNumericValue() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
-
getter for numericValue - gets
- getNumericValue(int) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
-
- getNumericWords() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- getNumericWords() - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- getNumFeatures() - Method in class org.apache.ctakes.assertion.util.NegationManualDepContextAnalyzer
-
- getNumNEFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- getNumOfWordTokensInSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
return the number of words except for "and" "or" in span
- getNumOfWordTokensInSpanExceptGivenNE(JCas, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
return the number of words in span except for "and" "or" and given NE
- getNumPosition() - Method in class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter
-
- getNumPosition() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
-
- getNumPosition() - Method in interface org.apache.ctakes.core.fsm.token.WordToken
-
- getNumPosition() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Gets the position of a number inside a Token.
- getNumPosition() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
getter for numPosition - gets
- getNumPosition(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- getNumPronFeats() - Static method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- getNumSamples() - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
- getNumType() - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken
-
getter for numType - gets
- getNumType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
-
- getOid() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for oid - gets
- getOid(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getOid() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getOntologyConcept() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for ontologyConcept - gets
- getOntologyConcept(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getOntologyConceptArr() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for ontologyConceptArr - gets
- getOntologyConceptArr(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
indexed getter for ontologyConceptArr - gets an indexed value -
- getOntologyConceptArr(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getOntologyConceptArr(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getOntologyConceptCodes(IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer
-
Get the CUIs, RxNorm codes specified for this entity.
- getOntologyConcepts(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getOntologyConceptStream(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getOpenConnection() - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
- getOprions() - Static method in class org.apache.ctakes.jdl.AppMain
-
- getOption_0() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_1() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_2() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_3() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_4() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_5() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_6() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_7() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_8() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_9() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_a() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_A() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_b() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_B() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_c() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_C() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_d() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_D() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_e() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_E() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_f() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_F() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_g() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_G() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_h() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_H() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_j() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_J() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_k() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_K() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_m() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_M() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_n() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_N() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_q() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_Q() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_r() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_R() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_t() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_T() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_u() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_U() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_v() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_V() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_w() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_W() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_x() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_X() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_y() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_Y() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_z() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOption_Z() - Method in interface org.apache.ctakes.core.pipeline.CliOptionals
-
- getOptionKey() - Method in enum org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser.ParseOption
-
- getOptions() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getOrCreateCollection(K) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
obtains a collection mapped with key.
- getOrCreateCollection(K) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
obtains a collection mapped with key.
- getOrCreateCollection(K) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
obtains a collection mapped with key.
- getOrCreateCollection(K) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
obtains a collection mapped with key.
- getOrCreateCollection(K) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
obtains a collection mapped with key.
- getOrCreateCollection(K) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
obtains a collection mapped with key.
- getOrdinalInterpretation() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
getter for ordinalInterpretation - gets
- getOrdinalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- getOrdinalInterpretation() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
getter for ordinalInterpretation - gets
- getOrdinalInterpretation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- getOrigEndOffset() - Method in class org.apache.ctakes.core.ci.TextModification
-
- getOriginalEntityExternalId() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
getter for originalEntityExternalId - gets
- getOriginalEntityExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- getOriginalText() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for originalText - gets The covered text of the span or the disjoint spans that resulted in the creation of this
IdentifiedAnnotation.
- getOriginalText(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
indexed getter for originalText - gets an indexed value - The covered text of the span or the disjoint spans that resulted in the creation of this
IdentifiedAnnotation.
- getOriginalText(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getOriginalText(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getOrigStartOffset() - Method in class org.apache.ctakes.core.ci.TextModification
-
- getOui() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for oui - gets holds the rxnorm unique identifier for a given drug mention.
- getOui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getOutputDirectory(JCas, String, String) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
- getOutputDirectory() - Method in interface org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase.Options
-
- getOutputDirectory() - Method in class org.mitre.medfacts.uima.RunZoner
-
- getOutputXml() - Method in interface org.apache.ctakes.core.cc.NonTerminalConsumer
-
Gets the generated output from a CasConsumer in XML form.
- getP1() - Method in class org.apache.ctakes.coreference.type.Pair
-
getter for p1 - gets
- getP1(int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
-
- getP2() - Method in class org.apache.ctakes.coreference.type.Pair
-
getter for p2 - gets
- getP2(int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
-
- getPageRankService() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getPairedConceptFactories(String) - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getPairedConceptFactories(String) - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getPairedDictionaries(String) - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getPairedDictionaries(String) - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getPairExtractors() - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- getPairNames() - Method in class org.apache.ctakes.dictionary.lookup2.util.DefaultDictionarySpec
- getPairNames() - Method in interface org.apache.ctakes.dictionary.lookup2.util.DictionarySpec
-
- getPairs(JCas, MENTION_TYPE) - Method in interface org.apache.ctakes.coreference.ae.pairing.AnnotationPairer
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterMentionPairer_ImplBase
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.ClusterPairer
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.ExactStringPairer
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.HeadwordPairer
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.SectionHeaderPairer
-
- getPairs(JCas, Markable) - Method in class org.apache.ctakes.coreference.ae.pairing.cluster.SentenceDistancePairer
-
- getPairs() - Method in class org.apache.ctakes.typesystem.type.util.Pairs
-
getter for pairs - gets
- getPairs(int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs
-
indexed getter for pairs - gets an indexed value -
- getPairs(int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
- getPairs(int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
- getParagraphPairs(JCas, Annotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getParam1() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getParam1() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getParam1() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getParam1() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getParam2() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getParam2() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getParam2() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- getParam2() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- getParameter(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameter(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameter(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParameterClass(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameterClass(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameterClass(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParameterCount() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameterCount() - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameterCount() - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParameterDescription(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameterDescription(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameterDescription(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParameterHolder() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
-
- getParameterModel() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getParameterName(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameterName(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameterName(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParameterValue(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- getParameterValue(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- getParameterValue(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getParent() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
getter for parent - gets
- getParent(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- getParentAnnoBaseId() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- getParentAnnotationId() - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- getParentConceptEvalThreshold() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getParentConceptTopThreshold() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getParents() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getParentsArray() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- getParentSectionId() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for parentSectionId - gets The section in which the subsection was found.
- getParentSectionId(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getParentUimaTypeId() - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- getParseString(FSIterator) - Method in class org.apache.ctakes.constituency.parser.MaxentParserWrapper
-
- getParseString(FSIterator) - Method in interface org.apache.ctakes.constituency.parser.ParserWrapper
-
- getParsingPipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getParticipatesIn() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
getter for participatesIn - gets
- getParticipatesIn(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- getPartOfSpeech() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
getter for partOfSpeech - gets
- getPartOfSpeech(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- getPassword() - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Gets the value of the password property.
- getPath(List<ConllDependencyNode>, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Given a set of ConllDependencyNodes, find the path between two nodes
- getPath(JCas, ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Given a CAS, find the path between two nodes in a sentence
- getPath(List<ConcRel>, List<List<ConcRel>>, int, int) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
recursively build all paths to root from a concept - add elements from
set of parents.
- getPathBetweenNodes(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
Finds the path between two dependency nodes
- getPathBetweenNodes(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
Finds the path between two dependency nodes
- getPathEnclosedTree(SimpleTree, List<SimpleTree>, SimpleTree, SimpleTree) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- getPathLength() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- getPathsToCommonAncestor(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
Returns the paths from each node to the common ancestor between them
- getPathsToCommonAncestor(ConllDependencyNode, ConllDependencyNode) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
Returns the paths from each node to the common ancestor between them
- getPathToSentenceHead(ConllDependencyNode) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
- getPathToSentenceHead(ConllDependencyNode) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
- getPathToTop(JCas, ConllDependencyNode) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getPatientID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
getter for patientID - gets
- getPatientID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- getPatientId() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getPatientNum(JCas) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
- getPatients() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getPatientSets(List<Integer>, Collection<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
-
- getPattern() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the pattern property.
- getPattern() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- getPdeprel() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for pdeprel - gets
- getPdeprel(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getPercentLabeled() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- getPeriod() - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
-
getter for period - gets The periodic unit used, e.g day, month, hour, etc.
- getPeriod(int) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
-
- getPermanence() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for permanence - gets
- getPermanence(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getPermutationList(int) - Static method in class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil
-
Gets all permutations for the given level and all sub-levels.
- getPerson(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- getPhead() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for phead - gets
- getPhead(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getPhrases(List<LookupToken>) - Method in interface org.apache.ctakes.dictionary.lookup.phrasebuilder.PhraseBuilder
-
Given a list of LookupTokens, one or more phrases are built.
- getPhrases(List<LookupToken>) - Method in class org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl
-
- getPipeBit(PipeBitInfo) - Method in class org.apache.ctakes.gui.pipeline.bit.available.AvailablesListModel
-
- getPipeBitClass() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getPipeBitClass() - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getPipeBitClass() - Method in interface org.apache.ctakes.gui.pipeline.bit.user.UserBit
-
- getPipeBitInfo() - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- getPipeBitInfo() - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- getPipeBitInfo() - Method in interface org.apache.ctakes.gui.pipeline.bit.user.UserBit
-
- getPipeBits() - Method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitFinder
-
- getPiperInfos() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperFinder
-
- getPlaintextAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
Builds the plaintext prepreprocessing pipeline for ClearNLP
- getPolarity() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for polarity - gets
- getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getPolarity() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
getter for polarity - gets
- getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- getPolarity() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for polarity - gets
- getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getPolarity() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for polarity - gets
- getPolarity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getPos() - Method in interface org.apache.ctakes.core.cc.pretty.cell.BaseItemCell
-
- getPos() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
- getPosContext(JCas, Sentence, Annotation, String, Annotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
Print POS tags from left to right.
- getPosition(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Returns the line and column numbers of the specified XcasAnnotation.
- getPositionFeatures(char, int, String, String) - Method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- getPositionOther(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Finds an XcasAnnotation with the same attributes as specified,
and returns its line and column numbers.
- getPositionOwn(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Returns the line and column numbers of the specified XcasAnnotation,
which is included in this XcasFile object.
- getPositionOwn(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Returns the line and column numbers of the XcasAnnotation,
specified by the original XCAS internal _id field.
- getPositions(String) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
-
- getPositions(StringBuffer) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
-
- getPositions(char[]) - Method in class org.apache.ctakes.core.sentence.EndOfSentenceScannerImpl
-
- getPositionSimilar(XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Finds an XcasAnnotation of the same type as specified, and
a same text span, then returns its line and column number.
- getPositive() - Method in class org.apache.ctakes.core.fsm.adapters.NumberTokenAdapter
-
- getPositive() - Method in class org.apache.ctakes.core.fsm.token.adapter.NumberTokenAdapter
-
- getPositive() - Method in interface org.apache.ctakes.core.fsm.token.NumberToken
-
- getPosTag(JCas, Annotation) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Return system generated POS tag or null if none available.
- getPostag() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
getter for postag - gets
- getPostag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- getPosTag() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
getter for posTag - gets
- getPosTag(int) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
- getPow() - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- getPow() - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- getPpv() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getPrecision() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getPredicate() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
getter for predicate - gets
- getPredicate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
- getPredictedClassId() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- getPredictedClassId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getPredictedClassIds() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- getPreferredSize() - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
- getPreferredText() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- getPreferredText() - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- getPreferredText() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getPreferredText() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
getter for preferredText - gets preferredText is the preferred term.
- getPreferredText(int) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- getPreferredText() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
-
getter for preferredText - gets preferredText is the normalized/resolved section name.
- getPreferredText(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
- getPrefTerm() - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory.CuiTuiTerm
-
- getPreparedStatement() - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter.TableSqlInfo
-
- getPrepareScript() - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- getPrepareScriptStatementDelimiter() - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- getPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getPreprocessorAggregateBuilder() - Static method in class org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase
-
Preprocessing needed for relation extraction.
- getPrimaryAssociatedCodeElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getPrimaryAssociatedCodeElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getPrintErrors() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getPrintErrors() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getPrintFormattedRelations() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.TempRelOptions
-
- getPrintOverlappingSpans() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getProbabilities() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- getProbabilities() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- getProcedureDevice() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for procedureDevice - gets
- getProcedureDevice(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getProcedureDevice() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for procedureDevice - gets
- getProcedureDevice(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getProgeny(List<ConllDependencyNode>, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getProgress() - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- getProgress() - Method in class org.apache.ctakes.assertion.cr.NegExCorpusReader
-
- getProgress() - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
- getProgress() - Method in class org.apache.ctakes.assertion.eval.XMIReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
- getProgress() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.FileTreeReader
- getProgress() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.TextReader
-
- getProgress() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
- getProgress() - Method in class org.apache.ctakes.core.cr.XMIReader
-
- getProgress() - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
-
- getProgress() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
- getProgress() - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
-
- getProgress() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- getPronCorefFeatures() - Static method in class org.apache.ctakes.coreference.util.FeatureVector
-
- getProperties(String, boolean) - Static method in class org.apache.ctakes.jdl.common.PropFile
-
- getProperties() - Method in class org.apache.ctakes.typesystem.type.refsem.Event
-
getter for properties - gets
- getProperties(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type
-
- getProperty(String) - Method in class org.apache.ctakes.jdl.common.PropertiesFile
-
- getProperty(Properties, String) - Static method in class org.apache.ctakes.jdl.common.PropFile
-
- getProviderId(SourceData) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
- getProviderID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
getter for providerID - gets
- getProviderID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
indexed getter for providerID - gets an indexed value -
- getProviderID(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- getProviderID(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- getPseSen() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
getter for pseSen - gets
- getPseSen(int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- getQuery() - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- getQueryArgs() - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- getRank() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- getRankCutoff() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- getRareWord() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getRareWordHits(FastLookupToken) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.AbstractRareWordDictionary
-
Any single token can exist in zero or more terms in the dictionary.
- getRareWordHits(FastLookupToken) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.BsvRareWordDictionary
-
Any single token can exist in zero or more terms in the dictionary.
- getRareWordHits(String) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.BsvRareWordDictionary
-
Get all terms within the dictionary that contain a given rare word
- getRareWordHits(String) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
-
Get all terms within the dictionary that contain a given rare word
- getRareWordHits(String) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.MemRareWordDictionary
-
Get all terms within the dictionary that contain a given rare word
- getRareWordHits(FastLookupToken) - Method in interface org.apache.ctakes.dictionary.lookup2.dictionary.RareWordDictionary
-
Any single token can exist in zero or more terms in the dictionary.
- getRareWordHits(String) - Method in interface org.apache.ctakes.dictionary.lookup2.dictionary.RareWordDictionary
-
Get all terms within the dictionary that contain a given rare word
- getRareWordHits(FastLookupToken) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
-
Any single token can exist in zero or more terms in the dictionary.
- getRareWordHits(String) - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
-
Get all terms within the dictionary that contain a given rare word
- getRareWordIndex() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getRareWordTerm() - Method in class org.apache.ctakes.dictionary.lookup2.term.SpannedRareWordTerm
-
- getRawText() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getRawTextDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getReadableFile(String) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
- getReadableFile(String) - Static method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- getReader() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- getReason() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for reason - gets
- getReason(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
indexed getter for reason - gets an indexed value -
- getReason(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getReason(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getRecall() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getReciprocal() - Method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getRecordID() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
getter for recordID - gets ID of record that this sentence belongs to.
- getRecordID(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- getRecordID() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
getter for recordID - gets Represents the document record id
- getRecordID(int) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
- getRecordTextBegin() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
getter for recordTextBegin - gets Begin offset of the sentence relative to the entire
record text.
- getRecordTextBegin(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- getRecordTextEnd() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
getter for recordTextEnd - gets End offset of the sentence relative to the entire
record text.
- getRecordTextEnd(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- getReference(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Returns the referenced XcasAnnotations of the specified attribute.
- getReferenceRangeNarrative() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
getter for referenceRangeNarrative - gets
- getReferenceRangeNarrative(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- getReferenceRangeNarrative() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
getter for referenceRangeNarrative - gets
- getReferenceRangeNarrative(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- getRegex() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- getRegex() - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- getRegexName(int) - Method in class org.apache.ctakes.assertion.util.NegationManualDepContextAnalyzer
-
- getRegions(JCas, Sentence, Annotation, Annotation, int) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
Return tokens between arg1 and arg2 as string
- getRel() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getRela() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getRelation() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
getter for relation - gets
- getRelation(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getRelationCategory(Map<MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair, CollectionTextRelationIdentifiedAnnotationRelation>, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
Looks up the arguments in the specified lookup table and converts the
relation into a label for classification
- getRelationCategory(Map<MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair, CollectionTextRelationIdentifiedAnnotationRelation>, CollectionTextRelation, IdentifiedAnnotation) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
Looks up the arguments in the specified lookup table and converts the
relation into a label for classification
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
Looks up the arguments in the specified lookup table and converts the
relation into a label for classification
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventEventRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.ConsecutiveSentencesEventTimeRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventCNNAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventI2B2RelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationGoldContainerAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventEventRelationSeedBasedAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator
-
Dima's way of getting lables
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeI2B2RelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.EventTimeSelfRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.NeuralEventTimeSelfRelationAnnotator
-
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
Looks up the arguments in the specified lookup table and converts the
relation into a label for classification
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPosBasedAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPositionBasedAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndBIOBasedAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndPosBasedAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
original way of getting label
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePosBasedAnnotator
-
Dima's way of getting lables
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePositionBasedAnnotator
-
Dima's way of getting lables
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
Dima's way of getting lables
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
Dima's way of getting lables
- getRelationCategory(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
Dima's way of getting lables
- getRelationCategory2(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPosBasedAnnotator
-
- getRelationCategory2(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPositionBasedAnnotator
-
- getRelationCategory2(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndBIOBasedAnnotator
-
- getRelationCategory2(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndPosBasedAnnotator
-
- getRelationCategory2(Map<List<Annotation>, BinaryTextRelation>, IdentifiedAnnotation, IdentifiedAnnotation) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.CausesBringsAboutRelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.ManagesTreatsRelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.ManifestationOfRelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- getRelationClass() - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- getRelationId(TemporalTextRelation) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getRelations(Document) - Static method in class org.apache.ctakes.assertion.cr.XMLReader
-
- getRelations() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getRelations(Document) - Static method in class org.apache.ctakes.relationextractor.knowtator.XMLReader
-
- getRelations() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
getter for relations - gets
- getRelations(int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
- getRelationStats(String) - Static method in class org.apache.ctakes.relationextractor.data.Stats
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getRelativeTemporalContext() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for relativeTemporalContext - gets
- getRelativeTemporalContext(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getResult() - Method in class org.apache.ctakes.relationextractor.data.analysis.Utils.Callback
-
- getResult() - Method in class org.apache.ctakes.temporal.duration.Utils.Callback
-
- getResults() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- getRightScopeContextAnnotations(JCas, Annotation, Annotation) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- getRightSibProgeny(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getRightSibs(ConllDependencyNode, List<ConllDependencyNode>) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- getRole() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
getter for role - gets
- getRole(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- getRoot(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getRoot(TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
-
- getRoot() - Method in class org.apache.ctakes.jdl.data.xml.DomParser
-
- getRoot() - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- getRoute() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for route - gets Medication route refers to the way that a drug is introduced into the body.
- getRoute(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getRouteBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getRouteBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for routeBegin - gets
- getRouteBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getRouteElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getRouteElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getRouteEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getRouteEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for routeEnd - gets
- getRouteEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getRouteMention() - Method in class org.apache.ctakes.drugner.elements.RouteElement
-
- getRowCount() - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- getRowCount() - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- getRowCount() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- getRowNum() - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
-
- getRows(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTable
-
- getRui() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getRule() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- getRun() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- getRun() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getRXNORMCuis() - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
get a set of all cuis in RXNORM.
- getRXNORMCuis() - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- getSab() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSab() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- getSaui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSchemeCodes(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getSchemeCodes(JCas) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getSchemeCodes(JCas, T) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getSchemeCodes(Collection<IdentifiedAnnotation>) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getScope() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
getter for Scope - gets
- getScope(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
- getScope() - Method in enum org.apache.ctakes.ytex.kernel.SparseDataExporter.ScopeEnum
-
- getScopeContextAnnotations(JCas, Annotation, Annotation, int) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- getScopedFileName(String, String, Integer, Integer, String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
generate file name for given outdir and 'scope'
- getScore() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
getter for score - gets Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, the score represents how similar this sense is to surrounding senses (higher scores = more likely to be the correct sense)
- getScore(int) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- getScoreFunction(MutualInformationFeatureSelection.CombineScoreMethod) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- getScoreFunction(MutualInformationFeatureSelection.CombineScoreMethod) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- getScui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSdui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSearchCUI() - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- getSearchCUI() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getSearchProperties() - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- getSearchProperties() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- getSearchProperties() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getSearchProperties() - Method in class org.apache.ctakes.ytex.web.search.SearchConfigBean
-
- getSearchResultList() - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- getSearchResultList() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getSearchTerm() - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- getSecondaryAssociatedCodeElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getSecondaryAssociatedCodeElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getSectionHeaderPairs(JCas, Annotation, double) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getSectionHeaderPairs(JCas, IdentifiedAnnotation, int) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getSectionName() - Method in class org.apache.ctakes.core.util.DocumentSection
-
- getSectionTypes() - Static method in class org.apache.ctakes.core.ae.RegexSectionizer
-
- getSegment(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Gets meta data about the specified segment.
- getSegmentID(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return segmentID contain the given span
- getSegmentID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for segmentID - gets
- getSegmentID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getSegmentId() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
getter for segmentId - gets
- getSegmentId(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
- getSegmentID() - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- getSegmentIdentifiers() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
Gets a set of segment identifiers.
- getSegmentIDOfSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return segmentID of the sentence containing the given span
- getSegmentRegexID() - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- getSegmentRegexs() - Method in interface org.apache.ctakes.ytex.uima.dao.SegmentRegexDao
-
- getSegmentRegexs() - Method in class org.apache.ctakes.ytex.uima.dao.SegmentRegexDaoImpl
-
- getSemanticName(String) - Static method in enum org.apache.ctakes.core.cc.pretty.SemanticGroup
-
- getSemanticSimDescriptionMap() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- getSemanticSimRegistryBean() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getSemanticSimRegistryBean() - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- getSemanticSimServiceList() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- getSemanticSimServiceMap() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- getSemanticType(JCas, BaseToken) - Method in class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe
-
- getSensitivity() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getSentence(JCas, Annotation) - Static method in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
Find the sentence in which an Annotation lives
- getSentence() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
getter for sentence - gets sentence containing side effect
- getSentence(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- getSentenceDistance() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- getSentenceDistancePairs(JCas, IdentifiedAnnotation, int) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- getSentenceID() - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation
-
getter for sentenceID - gets
- getSentenceID(int) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
-
- getSentenceID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for sentenceID - gets contains the sentence id of the sentence that contains the NE's text span
- getSentenceID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getSentenceNumber() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
getter for sentenceNumber - gets
- getSentenceNumber(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
- getSentenceNumContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return sentenceNumber of the sentence containing the given span
- getSentenceProbabilities() - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Returns the probabilities associated with the most recent
calls to sentDetect().
- getSentenceSpanContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return sentence span containing the span (begin & end)
- getSentenceSpanOfGivenSentenceNum(JCas, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return sentence span of the given sentence number
- getSentenceText() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- getSentenceTextContainingGivenSpan(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return sentence text containing the span (begin & end)
- getSentenceWithMarkedArgs(JCas, Sentence, Annotation, Annotation) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter
-
- getSeq() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the seq property.
- getSeq() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Gets the value of the seq property.
- getSessionFactory() - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.uima.dao.DocumentDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.uima.dao.NamedEntityRegexDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.uima.dao.SegmentRegexDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.weka.DocumentResultInstanceImporter
-
- getSessionFactory() - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- getSeverity() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for severity - gets
- getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getSeverity() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for severity - gets
- getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getSeverity() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for severity - gets
- getSeverity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getSideEffect() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
getter for sideEffect - gets side effect mention in NamedEntity
- getSideEffect(int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- getSimilarities() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- getSimilarity(String, String) - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- getSimilarity() - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- getSimilarityInfo() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- getSimilarityList() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getSimilarityMap() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getSimilarityMap() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean.SimilarityEntry
-
- getSimilarityMetricMap() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getSimilarPairs(JCas, Annotation) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- getSimilarWords(String, int) - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- getSimInfo() - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- getSimpleClone(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- getSize(NonEmptyFSList) - Static method in class org.apache.ctakes.coreference.util.ClusterUtils
-
- getSize() - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
-
- getSize() - Method in class org.apache.ctakes.gui.pipeline.bit.available.AvailablesListModel
- getSize() - Method in class org.apache.ctakes.gui.pipeline.bit.info.TypeProductListModel
- getSize() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
- getSize() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getSkip() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the skip property.
- getSkipDataWriting() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getSkipTrain() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl
-
Searches for the Snomed codes that are synonyms of the UMLS concept with CUI umlsCode
- getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl
-
Queries the given UMLS CUI against the DB.
- getSnomedCodes(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl
-
Find all Snomed codes that map to the given UMLS code (CUI),
by looking in a lucene index
- getSnomedExclusions() - Static method in class org.apache.ctakes.gui.dictionary.umls.MrconsoParser
-
- getSortedLookupTokens(JCas, Annotation) - Method in class org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl
-
Gets a list of tokens that we promise to return in sorted order that are constrained by the
input annotation.
- getSortedLookupTokens(JCas, Annotation) - Method in class org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets a list of tokens that we promise to return in sorted order that are constrained by the
input annotation.
- getSortedLookupTokens(JCas, Annotation) - Method in interface org.apache.ctakes.dictionary.lookup.ae.LookupInitializer
-
Gets a list of tokens that we promise to return in sorted order that are constrained by the
input annotation.
- getSortedLookupTokens(JCas, Annotation) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
Gets a list of tokens that we promise to return in sorted order that are constrained by the
input annotation.
- getSourceApplication() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceApplication - gets
- getSourceApplication(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceData(JCas) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
The first step in utilizing SourceData is getting it!
- getSourceData() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
getter for sourceData - gets
- getSourceData(int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- getSourceEncounterId() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceEncounterId - gets
- getSourceEncounterId(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceFileName(JCas, String) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
- getSourceFilePath(JCas) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
- getSourceInstanceId() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceInstanceId - gets
- getSourceInstanceId(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceInstitution() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceInstitution - gets
- getSourceInstitution(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceOriginalDate() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceOriginalDate - gets
- getSourceOriginalDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceRevisionDate() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceRevisionDate - gets
- getSourceRevisionDate(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSourceRevisionNbr() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
getter for sourceRevisionNbr - gets
- getSourceRevisionNbr(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- getSparseDataExporter() - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- getSparseLineValues(SparseData, Map<String, Integer>, Map<String, Map<String, Integer>>, long) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
create a map of attribute index - attribute value for the given instance.
- getSparseLineValues(SparseData, Map<String, Integer>, Map<String, Map<String, Integer>>, long) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
add instance_id to sparse line values
- getSpecificity() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getSplitName() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getSplitName() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- getSplitSentence(FSArray) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getSql() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getSqlInsert(CsvLoadType) - Method in class org.apache.ctakes.jdl.data.loader.CsvLoader
-
- getSqlInsert(XmlLoadType) - Method in class org.apache.ctakes.jdl.data.loader.XmlLoader
-
- getSqlType() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getSrcXml() - Method in class org.apache.ctakes.jdl.data.xml.DomParser
-
- getSrcXml() - Method in class org.apache.ctakes.jdl.data.xml.SaxParser
-
- getSrl() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getStandardChunkAdjusterAnnotator() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getStart() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
- getStart() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
- getStart() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
- getStart() - Method in interface org.apache.ctakes.dictionary.lookup2.textspan.TextSpan
-
- getStart() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getStart() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- getStart() - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- getStartDate(SourceData) - Static method in class org.apache.ctakes.core.util.SourceMetadataUtil
-
- getStartDate() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for startDate - gets
- getStartDate(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStartDate() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
getter for startDate - gets
- getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- getStartDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
getter for startDate - gets
- getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- getStartDate() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
getter for startDate - gets
- getStartDate(int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- getStartDateElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStartDateElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getStartLine() - Method in class org.apache.ctakes.core.util.DocumentSection
-
- getStartOffset() - Method in class org.apache.ctakes.core.fsm.adapters.BaseTokenAdapter
-
- getStartOffset() - Method in class org.apache.ctakes.core.fsm.output.BaseTokenImpl
-
- getStartOffset() - Method in class org.apache.ctakes.core.fsm.token.adapter.BaseTokenAdapter
-
- getStartOffset() - Method in interface org.apache.ctakes.core.fsm.token.BaseToken
-
- getStartOffset() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Gets the start offset.
- getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Gets the start offset.
- getStartOffset() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Gets the start offset.
- getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- getStartOffset() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
- getStartOffset() - Method in class org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl
-
- getStartOffset() - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- getStartTime() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
getter for startTime - gets
- getStartTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- getStatus() - Method in class org.apache.ctakes.core.fsm.output.StatusIndicator
-
- getStatus() - Method in class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
-
- getStatus() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for status - gets
- getStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStatus() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for status - gets Status of 'possible', 'history of', or 'family history of'.
- getStatus(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getStdDev() - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
- getStemmedStr() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- getStems(String, String, IDictionary) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
Get a list of possible stems.
- getStn() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getStr() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getStrength() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for strength - gets
- getStrength(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStrengthBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStrengthBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for strengthBegin - gets
- getStrengthBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStrengthElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStrengthElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getStrengthEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStrengthEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for strengthEnd - gets
- getStrengthEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStrengthMention() - Method in class org.apache.ctakes.drugner.elements.StrengthElement
-
- getStrengthMention() - Method in class org.apache.ctakes.drugner.elements.StrengthUnitElement
-
- getStrengthUnit() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for strengthUnit - gets
- getStrengthUnit(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getStrengthUnitBegin() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStrengthUnitElement() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStrengthUnitElement() - Method in interface org.apache.ctakes.drugner.DrugModel
-
- getStrengthUnitEnd() - Method in class org.apache.ctakes.drugner.DrugMention
-
- getStringAsTuis(Collection<String>) - Static method in class org.apache.ctakes.dictionary.lookup2.util.TuiCodeUtil
-
- getStringAttribute(String) - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Gets an attribute.
- getStringAttribute(String) - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Gets an attribute.
- getStringAttribute(String) - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- getStringAttribute(String) - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- getStringParameterValuesMap(String, UimaContext, String) - Static method in class org.apache.ctakes.core.util.ParamUtil
-
- getStringParameterValuesMap(String[], String) - Static method in class org.apache.ctakes.core.util.ParamUtil
-
- getStringParameterValuesSet(String, UimaContext) - Static method in class org.apache.ctakes.core.util.ParamUtil
-
- getStrings() - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl
-
- getStrings() - Method in interface org.apache.ctakes.core.resource.StringsResource
-
- getStrippedText(String) - Method in class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- getStt() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSty() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getStyleMapFileName(String) - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Gets the name of the style map file for the given AE or TypeSystem
descriptor filename.
- getSubcorpus() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getSubdirectory(JCas, String) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
- getSuBegin() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for suBegin - gets
- getSuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getSubject(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- getSubject() - Static method in class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
-
- getSubject() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for subject - gets
- getSubject(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getSubject() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for subject - gets
- getSubject(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getSubSectionBodyBegin() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for subSectionBodyBegin - gets Sub-section body begin offset.
- getSubSectionBodyBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getSubSectionBodyEnd() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for subSectionBodyEnd - gets Sub-section body end offset.
- getSubSectionBodyEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getSubSectionHeaderBegin() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for subSectionHeaderBegin - gets Begin offset of subSection header
- getSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getSubSectionHeaderEnd() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
getter for subSectionHeaderEnd - gets Ending offset of subsection header
- getSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- getSubsumerCount() - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- getSuEnd() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
getter for suEnd - gets
- getSuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- getSuggestion() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
getter for suggestion - gets
- getSuggestion(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- getSui() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSupportVectors() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getSuppress() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getSurroundingTree(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- getSurroundingTreeWithAnnotation(TreebankNode, String) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- getSynonymCount() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getSynonyms(IDictionary, String, String, boolean) - Static method in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
Retrieve a set of synonyms for a word.
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- getSystemAnnotations(JCas, Segment) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- getTable() - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Gets the value of the table property.
- getTable() - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Gets the value of the table property.
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.apache.ctakes.gui.component.FileTableCellEditor
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.apache.ctakes.gui.component.FileTableCellEditor
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiCellRenderer
-
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterCellRenderer
-
- getTableInfos() - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
Called from initialize()
- getTableInfos() - Method in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
Called from initialize()
- getTableName() - Method in interface org.apache.ctakes.core.cc.AbstractJdbcWriter.TableInfo
-
- getTableName() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getTableName() - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- getTableSqlInfoMap() - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
- getTag() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- getTag() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- getTargetClassId() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- getTargetClassId() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- getTargetClassIds() - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- getTargetClassName() - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- getTargetType() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getTargetTypeName() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- getTask() - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- getTerm() - Method in class org.apache.ctakes.dictionary.lookup2.dictionary.RareWordTermMapCreator.CuiTerm
-
- getTermByConceptId(String) - Method in interface org.apache.ctakes.ytex.web.search.ConceptSearchService
-
- getTermByConceptId(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- getTermFreqVectors(String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex
-
- getTerminals(JCas, Sentence) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getTerminals() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
getter for terminals - gets Stores the terminal nodes of the parse tree.
- getTerminals(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
indexed getter for terminals - gets an indexed value - Stores the terminal nodes of the parse tree.
- getTerminals(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- getTerminals(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- getTest() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getTest() - Method in interface org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.TempRelOptions
-
- getTestItems(Evaluation_ImplBase.Options) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getTestOnCTakes() - Method in interface org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.Options
-
- getTestPatientSets(File) - Static method in class org.apache.ctakes.temporal.eval.I2B2Data
-
- getTestPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
-
- getTestRemainders() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getTestTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- getTestXmiDir() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions
-
- getText() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
- getText() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- getText() - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- getText() - Method in interface org.apache.ctakes.core.cc.pretty.cell.ItemCell
-
- getText() - Method in class org.apache.ctakes.core.cc.pretty.cell.TimexCell
- getText() - Method in class org.apache.ctakes.core.fsm.adapters.TextTokenAdapter
-
- getText() - Method in class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
-
- getText() - Method in interface org.apache.ctakes.core.fsm.token.TextToken
-
- getText() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- getText() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
- getText() - Method in class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
Gets the text.
- getText() - Method in interface org.apache.ctakes.dictionary.lookup.vo.LookupAnnotation
-
Gets the text.
- getText() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- getText() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getText() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getText() - Method in class org.apache.ctakes.gui.component.LoggerPanel
-
- getText() - Method in class org.apache.ctakes.gui.component.SystemOutPanel
-
- getText() - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
- getText() - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- getText() - Method in class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
if this is a word, return the stemmed word, if available - i.e.
- getText() - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- getTextBetweenAnnotations(JCas, Annotation, Annotation) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Get relation context.
- getTextLine(int, int, Map<Integer, Integer>) - Method in class org.apache.ctakes.core.cc.pretty.row.DefaultItemRow
- getTextLine(int, int, Map<Integer, Integer>) - Method in interface org.apache.ctakes.core.cc.pretty.row.ItemRow
-
- getTextLineNumber(int) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
- getTextMention() - Method in class org.apache.ctakes.drugner.elements.TextMentionElement
-
- getTexts() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getTextSpan() - Method in class org.apache.ctakes.core.cc.pretty.cell.AbstractItemCell
- getTextSpan() - Method in interface org.apache.ctakes.core.cc.pretty.cell.ItemCell
-
- getTextSpan() - Method in class org.apache.ctakes.dictionary.lookup2.term.SpannedRareWordTerm
-
- getTextSpan() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getTextURI(JCas) - Method in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
Get the URI that the text in this class was loaded from
- getTextURI(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
Get the URI that the text in this class was loaded from
- getTextURI(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- getTextValue(Node) - Static method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
copied from AnnotationViewerDialog.
- getTextValue(Node) - Static method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Assumes node has a text field and extracts its value.
- getThresholdFeatures(String, String, String, String, Integer, double, String, double) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getThresholdFeatures(String, String, String, String, Integer, double, String, double) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getTildeItems(String) - Static method in class org.apache.ctakes.gui.dictionary.util.TokenUtil
-
- getTime() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
getter for time - gets
- getTime(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- getTimeClass() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
getter for timeClass - gets DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.
- getTimeClass(int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- getTimeRelationType(String) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getTimeRelationType(long, long, long, long) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getTimeRelationTypeAtoC(TlinkType) - Method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getTimeUnits(String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Extract time unit(s) from a temporal expression
and put in one of the eight bins above.
- getTimexMLValue(String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Use Bethard normalizer to get TimeML value.
- getTimexMLValue(String, String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Use Bethard normalizer to get TimeML value.
- getTlinkType(BinaryTextRelation) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
- getTlinkTypes(BinaryTextRelation) - Method in class org.apache.ctakes.temporal.utils.TLinkTypeArray2
-
- getTn() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getTn() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getTokenArrays() - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- getTokenContext(JCas, Sentence, Annotation, String, Annotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.ArgContextProvider
-
Print words from left to right.
- getTokenCount() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getTokenCounts(Collection<Concept>) - Static method in class org.apache.ctakes.gui.dictionary.util.RareWordUtil
-
- getTokenDistance(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- getTokenIndex() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
getter for tokenIndex - gets The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence.
- getTokenIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
- getTokenizedAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
Builds the tokenized preprocessing pipeline for ClearNLP
- getTokenizedInfPosAggregateBuilder() - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
Builds the tokenizedInf preprocessing for ClearNLP
- getTokenizedStr() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- getTokenizedText(String) - Static method in class org.apache.ctakes.gui.dictionary.util.TextTokenizer
-
- getTokenizedText(String, boolean) - Static method in class org.apache.ctakes.gui.dictionary.util.TextTokenizer
-
- getTokenNumber() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
getter for tokenNumber - gets
- getTokenNumber(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- getTokenOffset() - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- getTokenProcessingPipeline() - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation, String) - Static method in class org.apache.ctakes.assertion.util.AssertionDepUtils
-
- getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[]) - Static method in class org.apache.ctakes.assertion.util.AssertionDepUtils
-
- getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[]) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- getTokenRelTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[], boolean) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- getTokens() - Method in class org.apache.ctakes.dictionary.lookup2.term.RareWordTerm
-
- getTokens(String) - Static method in class org.apache.ctakes.gui.dictionary.util.TextTokenizer
-
- getTokens(String, boolean) - Static method in class org.apache.ctakes.gui.dictionary.util.TextTokenizer
-
- getTokensBetween(JCas, Sentence, Annotation, String, Annotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter
-
Return tokens between arg1 and arg2 as string
- getTokensBetweenExpanded(JCas, Sentence, Annotation, String, Annotation, String, int, Map<EventMention, Collection<EventMention>>) - Static method in class org.apache.ctakes.temporal.ae.EventEventCNNAnnotator
-
Print context from left to right.
- getTokensBetweenExpanded(JCas, Sentence, Annotation, String, Annotation, String, int, Map<EventMention, Collection<EventMention>>) - Static method in class org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator
-
Print context from left to right.
- getTokensBetweenExpanded(JCas, Sentence, Annotation, String, Annotation, String, int, Map<EventMention, Collection<EventMention>>) - Static method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
Print context from left to right.
- getTokensBetweenExpanded(JCas, Sentence, Annotation, String, Annotation, String, int, Map<EventMention, Collection<EventMention>>) - Static method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
Print context from left to right.
- getTokenTimexContext(JCas, Sentence, IdentifiedAnnotation, String, IdentifiedAnnotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- getTokenTimexContext(JCas, Sentence, IdentifiedAnnotation, String, IdentifiedAnnotation, String, int) - Static method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- getTokenTreeString(JCas, List<ConllDependencyNode>, Annotation) - Static method in class org.apache.ctakes.assertion.util.AssertionDepUtils
-
- getTokenTreeString(JCas, List<ConllDependencyNode>, Annotation, int) - Static method in class org.apache.ctakes.assertion.util.AssertionDepUtils
-
- getTokenTreeString(JCas, List<ConllDependencyNode>, Annotation[], String[], boolean) - Static method in class org.apache.ctakes.dependency.parser.util.AnnotationDepUtils
-
- getTopFeatures(String, String, String, String, Integer, double, String, Integer) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- getTopFeatures(String, String, String, String, Integer, double, String, Integer) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- getTopNode(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- getTp() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- getTp() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getTrainFileToDomain() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- getTrainingClassMap(String, SortedMap<Long, String>, SortedMap<Long, String>, Map<String, Integer>, SortedSet<Long>) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
pick through the training and test sets, figure out the class id for
all instance ids for training.
- getTrainingDataFile(File) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- getTrainItems(Evaluation_ImplBase.Options) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getTrainPatientSets(File) - Static method in class org.apache.ctakes.temporal.eval.I2B2Data
-
- getTrainPatientSets(List<Integer>) - Static method in class org.apache.ctakes.temporal.eval.THYMEData
-
- getTrainRemainders() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getTrainTextFiles(File) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- getTrainXmiDir() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluationOptions
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- getTransactionManager() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getTree() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
getter for tree - gets
- getTree(int) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
- getTreebankDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getTreebankParse() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
getter for treebankParse - gets A bracketed sentence string representing the parse tree.
- getTreebankParse(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- getTreeCopy(JCas, TopTreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getTreeCopy(JCas, TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- getTreeMappingInfo() - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- getTs() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getTty() - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- getTui() - Method in class org.apache.ctakes.dictionary.lookup2.concept.BsvConceptFactory.CuiTuiTerm
-
- getTui() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
getter for tui - gets
- getTui(int) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- getTui() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- getTuiCode(String) - Static method in class org.apache.ctakes.dictionary.lookup2.util.TuiCodeUtil
-
- getTuiList() - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
list of tuis that corresponds to bitset indices
- getTuiList() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- getTuis(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getTuis(JCas) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getTuis(JCas, T) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getTuis(Collection<IdentifiedAnnotation>) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getTuis() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getTuiSemanticGroupId(String) - Static method in class org.apache.ctakes.dictionary.lookup2.util.SemanticUtil
-
Sometimes a
- getTxTemplateNew() - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- getType() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Gets the type of the token.
- getType(String) - Static method in class org.apache.ctakes.core.util.JCasUtil
-
- getType(Class<? extends TOP>) - Static method in class org.apache.ctakes.core.util.JCasUtil
-
- getType() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
- getType() - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- getType() - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- getTypeID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for typeID - gets The type of named entity (e.g.
- getTypeID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getTypeIndexID() - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
- getTypeIndexID() - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
- getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Heading
-
- getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Subzone
-
- getTypeIndexID() - Method in class org.apache.ctakes.assertion.zoner.types.Zone
-
- getTypeIndexID() - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.DemMarkable
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.Markable
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.NEMarkable
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.Pair
-
- getTypeIndexID() - Method in class org.apache.ctakes.coreference.type.PronounMarkable
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DosagesAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.DurationAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FormAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FrequencyAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.RouteAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.StrengthAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.PSESentence
-
- getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
- getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.SESentence
-
- getTypeIndexID() - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
- getTypeIndexID() - Method in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Attribute
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Course
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Entity
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Event
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Severity
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.Time
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Affects
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Indicates
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOf
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Prevents
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOf
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ADJP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ADVP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.CONJP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.INTJ
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.LST
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NewlineToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.O
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PRT
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.SBAR
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.UCP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.VP
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.Markable
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.List
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.Pair
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.Pairs
-
- getTypeIndexID() - Method in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
- getTypeIndexID() - Method in class org.apache.ctakes.ytex.uima.types.Date
-
- getTypeIndexID() - Method in class org.apache.ctakes.ytex.uima.types.DocKey
-
- getTypeIndexID() - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
- getTypesStoreCoveredText() - Method in class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- getUI() - Method in class org.apache.ctakes.gui.component.SmoothToolTip
-
- getUIClassID() - Method in class org.apache.ctakes.gui.component.SmoothToolTip
-
Returns the name of the L&F class that renders this component.
- getUimaType() - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- getUimaTypeId() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getUimaTypeID() - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- getUimaTypeIdColumnName() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- getUimaTypeName() - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- getUmlsConcepts(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getUmlsConceptStream(IdentifiedAnnotation) - Static method in class org.apache.ctakes.core.util.OntologyConceptUtil
-
- getUmlsDao() - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- getUmlsFirstWordService() - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- getUncertainty() - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
getter for uncertainty - gets
- getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- getUncertainty() - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
getter for uncertainty - gets
- getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- getUncertainty() - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
getter for uncertainty - gets
- getUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- getUncertaintyTree(JCas, IdentifiedAnnotation, SemanticClasses) - Static method in class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation
-
- getUniqueKey() - Method in class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
Generates a unique key based on this objects values.
- getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
getter for unit - gets
- getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
- getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
getter for unit - gets The periodic unit used, e.g day, month, hour, etc.
- getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
- getUnit() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
getter for unit - gets the unit of measurement
- getUnit(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
- getUnwantedPosTexts() - Static method in class org.apache.ctakes.gui.dictionary.util.RareWordUtil
-
- getUpdateFont() - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Gets the update font property
- getUrl() - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Gets the value of the url property.
- getUrlPath() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperInfo
-
- getUsage() - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- getUsedcTakesSemantics(CollectionMap<Long, Concept, ? extends Collection<Concept>>) - Static method in class org.apache.ctakes.dictionary.lookup2.consumer.AbstractTermConsumer
-
- getUseGoldTrees() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getUserBit(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
-
- getUsername() - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Gets the value of the username property.
- getValidVocabularyCuis(String, Collection<String>) - Static method in class org.apache.ctakes.gui.dictionary.umls.MrconsoParser
-
Can cull the given collection of cuis
- getValue() - Method in class org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter
-
- getValue() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
-
- getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.DecimalTokenAdapter
-
- getValue() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
-
- getValue() - Method in interface org.apache.ctakes.core.fsm.token.DecimalToken
-
- getValue() - Method in interface org.apache.ctakes.core.fsm.token.IntegerToken
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Course
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
getter for value - gets Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.refsem.Severity
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
-
- getValue() - Method in class org.apache.ctakes.typesystem.type.util.Pair
-
getter for value - gets
- getValue(int) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
-
- getValue(int) - Method in class org.apache.ctakes.utils.distsem.WordVector
-
- getValue() - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- getValue1() - Method in class org.apache.ctakes.core.util.Pair
-
- getValue2() - Method in class org.apache.ctakes.core.util.Pair
-
- getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
-
- getValueAsDouble() - Method in class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
-
- getValueAt(int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- getValueAt(int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- getValueAt(int, int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- getValueClass() - Method in interface org.apache.ctakes.core.cc.AbstractJdbcWriter.FieldInfo
-
- getValueClass() - Method in enum org.apache.ctakes.core.cc.JdbcWriterTemplate.I2b2FieldInfo
-
- getValueLabelPrefix() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- getValueLabelPrefix() - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserParameterInfoPanel
-
- getValueLong() - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
getter for valueLong - gets
- getValueLong(int) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- getValues() - Method in class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
-
- getValues() - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
-
- getValues() - Method in class org.apache.ctakes.ytex.kernel.tree.NodeMappingInfo
-
- getValueString() - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
getter for valueString - gets
- getValueString(int) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- getVariant() - Method in class org.apache.ctakes.dictionary.lookup2.util.FastLookupToken
-
- getVcdim() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getVector(String) - Method in class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- getVocabularies() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- getVocabularyClass(String) - Method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
- getWantedSources() - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
-
- getWantedTargets() - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
-
- getWantedTuis() - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
-
- getWeight() - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- getWidth() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultBaseItemCell
- getWidth() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- getWidth() - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- getWidth() - Method in interface org.apache.ctakes.core.cc.pretty.cell.ItemCell
-
- getWidth() - Method in class org.apache.ctakes.core.cc.pretty.cell.TimexCell
- getWidth() - Method in class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
- getWidth() - Method in interface org.apache.ctakes.core.cc.pretty.textspan.TextSpan
-
- getWordTokenLen() - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
-
- getWriter(String, boolean) - Static method in class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline
-
- getXleaf() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Gets the value of the xleaf property.
- getxLeftover() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getxMerge() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getXMIDirectory() - Method in interface org.apache.ctakes.relationextractor.eval.SHARPXMI.Options
-
- getXMIDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getXMIReadingPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getXMIWriter(String) - Static method in class org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase
-
- getXMIWritingPreprocessorAggregateBuilder() - Static method in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- getXMIWritingPreprocessorAggregateBuilder() - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- getXml() - Method in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
Gets the value of the xml property.
- getXMLDirectory() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getXMLFormat() - Method in interface org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Options
-
- getXpath() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Gets the value of the xpath property.
- getXroot() - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Gets the value of the xroot property.
- getxVals() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- getYear() - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
getter for year - gets
- getYear(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- getYtexProperties() - Static method in class org.apache.ctakes.ytex.uima.ApplicationContextHolder
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- getYtexProperties() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- getYTEXTablePrefix() - Static method in class org.apache.ctakes.ytex.dao.DBUtil
-
- GlobalHotKeyManager - Class in org.apache.ctakes.gui.action
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.data.analysis.PrintNormalizedTemporalExpressions
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.EventEventDurationStatistics.AnalyseRelationArgumentDuration
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.EventTimeDurationStatistics.AnalyseRelationArgumentDuration
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveCertainEventEventRelationsInGold
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveCertainEventsInGold
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveCertainEventTimeRelationsInGold
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveUMLSEventEventRelationsInGold
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveUMLSEventTimeRelationsInGold
-
- GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- GoldAnnotationAnalysisPipeline - Class in org.apache.ctakes.relationextractor.data
-
Pipeline for analyzing gold annotations.
- GoldAnnotationAnalysisPipeline() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline
-
- GoldAnnotationAnalysisPipeline.Options - Class in org.apache.ctakes.relationextractor.data
-
- GoldAnnotationStatsCalculator - Class in org.apache.ctakes.relationextractor.data
-
Count various stats such as token and relation counts
based on the gold standard data.
- GoldAnnotationStatsCalculator() - Constructor for class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- GoldEntityAndAttributeReader - Class in org.apache.ctakes.assertion.cr
-
Read named entity annotations from knowtator xml files into the CAS
- GoldEntityAndAttributeReader() - Constructor for class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- GoldEntityAndAttributeReaderPipeline - Class in org.apache.ctakes.assertion.pipelines
-
A class for testing the reader for the gold standard relation data.
- GoldEntityAndAttributeReaderPipeline() - Constructor for class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
-
- GoldEntityAndAttributeReaderPipelineForSeedCorpus - Class in org.apache.ctakes.assertion.pipelines
-
A class for testing the reader for the gold standard relation data.
- GoldEntityAndAttributeReaderPipelineForSeedCorpus() - Constructor for class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
-
- GoldEventPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Read cTAKES annotations from XMI files.
- GoldEventPrinter() - Constructor for class org.apache.ctakes.temporal.nn.data.GoldEventPrinter
-
- GoldEventPrinter.EventPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print events and entities.
- GoldEventPrinterWithLabels - Class in org.apache.ctakes.temporal.nn.data
-
Read cTAKES annotations from XMI files.
- GoldEventPrinterWithLabels() - Constructor for class org.apache.ctakes.temporal.nn.data.GoldEventPrinterWithLabels
-
- GoldEventPrinterWithLabels.EventPrinter - Class in org.apache.ctakes.temporal.nn.data
-
Print events and entities.
- GoldRelationViewer - Class in org.apache.ctakes.relationextractor.data.analysis
-
Print gold standard relations and their context.
- GoldRelationViewer() - Constructor for class org.apache.ctakes.relationextractor.data.analysis.GoldRelationViewer
-
- GoldRelationViewer - Class in org.apache.ctakes.temporal.data.analysis
-
Print gold standard relations and their context.
- GoldRelationViewer() - Constructor for class org.apache.ctakes.temporal.data.analysis.GoldRelationViewer
-
- GoldRelationViewer.RelationContextPrinter - Class in org.apache.ctakes.relationextractor.data.analysis
-
Print gold standard relations and their context.
- GoldRelationViewer.RelationContextPrinter - Class in org.apache.ctakes.temporal.data.analysis
-
Print gold standard relations and their context.
- GoldStandardLabeler - Class in org.apache.ctakes.coreference.util
-
- GoldStandardLabeler(String, String, List<Annotation>) - Constructor for class org.apache.ctakes.coreference.util.GoldStandardLabeler
-
- goldViewName - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- goldViewName - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- GrammaticalRoleFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.salience
-
- GrammaticalRoleFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.salience.GrammaticalRoleFeatureExtractor
-
- GramMatrixArffDecorator(Map<Long, Integer>) - Constructor for class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixArffDecorator
-
Deprecated.
- GramMatrixExporter - Interface in org.apache.ctakes.ytex.weka
-
- GramMatrixExporterImpl - Class in org.apache.ctakes.ytex.weka
-
- GramMatrixExporterImpl() - Constructor for class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- GramMatrixExporterImpl.GramMatrixArffDecorator - Class in org.apache.ctakes.ytex.weka
-
Deprecated.
add gramIndex attribute to arff file
- GramMatrixExporterImpl.GramMatrixType - Enum in org.apache.ctakes.ytex.weka
-
Deprecated.
- GT_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- GT_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- GTEQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- GTEQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- I2B2_2010_CORPUS - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- I2B2_2010_TEST_CORPUS - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- I2B2_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- I2B2_MIPACQ_NEGEX_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- I2B2_MIPACQ_NEGEX_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- I2B2_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- I2B2_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTests
-
- I2B2_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTests
-
- I2B2_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- I2B2_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- I2B2Challenge2010CollectionReader - Class in org.apache.ctakes.assertion.cr
-
- I2B2Challenge2010CollectionReader() - Constructor for class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- I2B2Data - Class in org.apache.ctakes.temporal.eval
-
- I2B2Data() - Constructor for class org.apache.ctakes.temporal.eval.I2B2Data
-
- i2b2Output - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- I2B2TemporalXMLReader - Class in org.apache.ctakes.temporal.ae
-
- I2B2TemporalXMLReader() - Constructor for class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- iAnnotationType - Variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
- IconLoader - Class in org.apache.ctakes.gui.util
-
- id - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The unique identifier assigned to this annotation by Knowtator
- id - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData
-
- ID - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- id1 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo
-
- id1 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- id2 - Variable in class org.apache.ctakes.assertion.cr.RelationInfo
-
- id2 - Variable in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
Never called.
- IdentifiedAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
Internal - constructor used by generator
- IdentifiedAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
- IdentifiedAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
- IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Any span of text that has been discovered or flagged for some reason, such as a Named Entity.
- IdentifiedAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- IdentifiedAnnotationExpander - Class in org.apache.ctakes.relationextractor.ae
-
- IdentifiedAnnotationExpander() - Constructor for class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander
-
- IdentifiedAnnotationFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
Given a token, check if this token is inside any identified annotation
if so check if the identifiled annotion is a known event.
- IdentifiedAnnotationFeatureExtractor(String, Map<String, double[]>) - Constructor for class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor
-
- identifiedAnnotationId - Variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- IdentifiedAnnotationPair(IdentifiedAnnotation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.IdentifiedAnnotationPair
-
- IdentifiedAnnotationPair(IdentifiedAnnotation, IdentifiedAnnotation) - Constructor for class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.IdentifiedAnnotationPair
-
- IdentifiedAnnotationPairComparator() - Constructor for class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.IdentifiedAnnotationPairComparator
-
- identifier - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- IDENTITY_RELATION - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- idf(long, long) - Method in class org.apache.ctakes.utils.wiki.ApproximateSimilarity
-
- ignoreConditional - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ignoredSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- ignoreGeneric - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ignoreHistory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ignorePolarity - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ignoreSubject - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ignoreUncertainty - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- ImmutableCollectionMap<K,V,T extends Collection<V>> - Class in org.apache.ctakes.core.util.collection
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/5/2014
- ImmutableCollectionMap(CollectionMap<K, V, T>) - Constructor for class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
- IMPLANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- importClassifierEvaluation(String, Integer, String, String, String, String, BufferedReader) - Method in interface org.apache.ctakes.ytex.weka.WekaResultsImporter
-
- importClassifierEvaluation(String, Integer, String, String, String, String, BufferedReader) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- importDirectory(CommandLine) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
Expect directory with subdirectories for each evaluation.
- importDirectory(File, ClassifierEvaluationParser) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
recursively import directory.
- importDocumentResults(String, BufferedReader) - Method in interface org.apache.ctakes.ytex.weka.WekaResultsImporter
-
load results into document class table.
- importDocumentResults(String, BufferedReader) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
Delegate to importResults
- importInstanceResult(Integer, List<String>, String, int, int, List<Double>) - Method in class org.apache.ctakes.ytex.weka.DocumentResultInstanceImporter
-
- importInstanceResult(Integer, List<String>, String, int, int, List<Double>) - Method in interface org.apache.ctakes.ytex.weka.WekaResultInstanceImporter
-
- importInstanceResult(Integer, List<String>, String, int, int, List<Double>) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl.ClassifierEvaluationInstanceImporter
-
- importResults(WekaResultInstanceImporter, String, BufferedReader) - Method in interface org.apache.ctakes.ytex.weka.WekaResultsImporter
-
Parse weka output file, pass results to the specified importer to save
results
- importResults(WekaResultInstanceImporter, String, BufferedReader) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
Parse results, pass them off to WekaResultInstanceImporter
- ImportWekaResults - Class in org.apache.ctakes.ytex.weka
-
Runs org.apache.ctakes.ytex.weka.WekaResultsImporter for the specified task and result file.
- ImportWekaResults() - Constructor for class org.apache.ctakes.ytex.weka.ImportWekaResults
-
- ImputedFeatureEvaluator - Interface in org.apache.ctakes.ytex.kernel
-
- ImputedFeatureEvaluator.MeasureType - Enum in org.apache.ctakes.ytex.kernel
-
- ImputedFeatureEvaluatorImpl - Class in org.apache.ctakes.ytex.kernel
-
Calculate the mutual information of each concept of a corpus wrt a concept
graph and classification task (label) and possibly a fold.
- ImputedFeatureEvaluatorImpl() - Constructor for class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- ImputedFeatureEvaluatorImpl.ConceptInstanceMapExtractor - Class in org.apache.ctakes.ytex.kernel
-
fill in map of Concept Id - bin - instance ids
- ImputedFeatureEvaluatorImpl.JointDistribution - Class in org.apache.ctakes.ytex.kernel
-
joint distribution of concept (x) and class (y).
- ImputedFeatureEvaluatorImpl.Parameters - Class in org.apache.ctakes.ytex.kernel
-
We are passing around quite a few parameters.
- INCLUDE_HEADER - Static variable in interface org.apache.ctakes.ytex.sparsematrix.InstanceDataExporter
-
- INCLUDE_REL - Static variable in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- INCREASE - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- INCREASE_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- INCREASEFROM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- IndentStartState - Class in org.apache.ctakes.drugner.fsm.states.util
-
- IndentStartState(String) - Constructor for class org.apache.ctakes.drugner.fsm.states.util.IndentStartState
-
- INDEX_NAME - Static variable in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixArffDecorator
-
Deprecated.
- INDEX_NAME_NOMINAL - Static variable in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixArffDecorator
-
Deprecated.
- indexCoveringUmlsAnnotations(JCas) - Static method in class org.apache.ctakes.coreference.util.MarkableUtilities
-
- indexOfRegex(String, Pattern) - Static method in class org.apache.ctakes.drugner.DrugMention
-
Scan a string for the first occurrence of some regex Pattern.
- Indicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- Indicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- Indicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- Indicates - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- Indicates() - Constructor for class org.apache.ctakes.typesystem.type.relation.Indicates
-
Never called.
- Indicates(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Indicates
-
Internal - constructor used by generator
- Indicates(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Indicates
-
- Indicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- Indicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- Indicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- Indicates_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- Indicates_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Indicates_Type
-
initialize variables to correspond with Cas Type and Features
- IndicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- IndicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- IndicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- IndicatesTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- IndicatesTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
Never called.
- IndicatesTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
Internal - constructor used by generator
- IndicatesTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
- IndicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- IndicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- IndicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- IndicatesTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- IndicatesTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- INFOCONTENT - Static variable in interface org.apache.ctakes.ytex.kernel.InfoContentEvaluator
-
- InfoContentEvaluator - Interface in org.apache.ctakes.ytex.kernel
-
- InfoContentEvaluatorImpl - Class in org.apache.ctakes.ytex.kernel
-
Calculate the information content of each concept in a corpus wrt the
specified concept graph.
- InfoContentEvaluatorImpl() - Constructor for class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- INHALANT - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- init() - Static method in class org.apache.ctakes.utils.xcas_comparison.Const
-
- init() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- init() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- init() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- InitableJdbcConnectionResourceImpl - Class in org.apache.ctakes.ytex.uima.resource
-
copied from mayo JdbcConnectionResourceImpl.
- InitableJdbcConnectionResourceImpl() - Constructor for class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
- initClassifierEval(String, String, String, String, String) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- initClassifierEvaluation(String, ClassifierEvaluation) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- initClassifierEvaluationFromProperties(Properties, ClassifierEvaluation) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- initCuiTuiMapFromCorpus() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
load cui-tui for the specified corpus from the MRSTY table
- initDB(String, String) - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- initDocKeyMapping() - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- initEntityWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- initialize() - Method in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- initialize() - Method in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.eval.XMIReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- initialize() - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AlternateCuePhraseAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- initialize(UimaContext) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- initialize() - Method in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
Performs initialization logic.
- initialize(UimaContext) - Method in interface org.apache.ctakes.chunker.ae.ChunkCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.Chunker
-
- initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.DefaultChunkCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator
-
Method invoked by UIMA framework to initialize this annotator
- initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- initialize(UimaContext) - Method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
-
- initialize() - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
Init and load the sections mapping file and precompile the regex matches
into a hashmap
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.CopyAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.FilterAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.ListAnnotator
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.ParagraphAnnotator
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.RegexSectionizer
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SentenceDetector
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.StartFinishLogger
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
- initialize() - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
- initialize() - Method in class org.apache.ctakes.core.cc.CasConsumer
-
Read in configuration parameters
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.CuiCountFileWriter
- initialize() - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
-
- initialize() - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer
-
- initialize() - Method in class org.apache.ctakes.core.cc.JdbcWriterTemplate
- initialize() - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterFit
- initialize() - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterUima
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterFit
- initialize() - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterUima
- initialize() - Method in class org.apache.ctakes.core.cc.SentenceTokensPrinter
-
Checks for parameter OutputDirectory.
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.TextSpanWriter
- initialize() - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer
-
This method opens/creates the file specified by "TokenFreqFile" and initializes the
data structure that will keep track of frequency counts.
- initialize() - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
- initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
- initialize() - Method in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.FileTreeReader
- initialize() - Method in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
- initialize() - Method in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.TextReader
-
- initialize() - Method in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.cr.XMIReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.core.util.CtakesFileNamer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.CoreferenceChainScoringOutput
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.DeterministicMarkableAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MarkableSalienceAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI
-
- initialize(FlowControllerContext) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CorefEvalFlowController
-
- initialize(UimaContext) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.ParagraphVectorAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
-
- initialize() - Method in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
- initialize() - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter
-
Read in configuration parameters
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
- initialize(UimaContext) - Method in class org.apache.ctakes.dictionary.lookup2.ae.OverlapJCasTermAnnotator
-
Set the number of consecutive and total tokens that can be skipped (optional).
- initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
- initialize() - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- initialize(UimaContext) - Method in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- initialize(JFrame) - Method in class org.apache.ctakes.gui.component.DisablerPane
-
The DisablerPane must be initialized before it can be used
- initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Performs initialization logic.
- initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Performs initialization logic.
- initialize(UimaContext) - Method in class org.apache.ctakes.lvg.ae.ThreadSafeLvg
-
Calls initialize on the LvgSingleton.
- initialize(UimaContext) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer
-
This will be called by the ContextAnnotator during its initialize method
- initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- initialize() - Method in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.postagger.POSTagger
-
- initialize(UimaContext) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- initialize() - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.eval.XMIReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.XMIWriter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.RelationExtractorPrinter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
-
- initialize(AnnotatorContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
-
- initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- initialize() - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
Performs initialization logic.
- initialize() - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer
-
- initialize(UimaContext) - Method in class org.apache.ctakes.template.filler.ae.TemplateFillerAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.duration.EventDurationDistribution.TemporalDurationExtractor
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation.ProcessRelations
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.keras.ScriptStringFeatureDataWriter
-
- initialize(UimaContext) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeDataWriter
-
- initialize() - Method in class org.apache.ctakes.utils.wiki.WikiIndex
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.DateAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.DBConsumer
-
read config parameters
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
-
Load the regex-segment map from the database using the segmentRegexDao.
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
-
- initialize(UimaContext) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- initialize() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- initialize(UimaContext) - Method in class org.mitre.medfacts.uima.ZoneAnnotator
-
- initializeAttributes(SparseData, SortedSet<String>) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
initialize attributes
- initializeConceptFilter() - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
get needed properties out of outdir.
- initializeExport(InstanceData, Properties, SparseData) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
initialize export - called once
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
write distance up to 6 digit precision.
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
add the "0" class for transductive learning
- initializeExport(InstanceData, Properties, SparseData) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- initializeFeatureEvaluation(String, String, String, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- initializeFeatureSelection() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
initialize data structures for the fold that will be exported.
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory.SVMLinDataFormatter
-
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
write a file with the attribute names corresponding to the indices in
the libsvm data file
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
- initializeFold(SparseData, String, Integer, Integer, SortedMap<Boolean, SortedMap<Long, String>>) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- initializeInstances(String, BagOfWordsData, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
initialize the weka Instances
- initializeInstances(SparseData, SortedMap<Long, String>, boolean, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
initialize the weka Instances
- initializeLabel(String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>, Properties, SparseData) - Method in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
- initializeLabel(String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>, Properties, SparseData) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- initializeLabel(String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>, Properties, SparseData) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- initializeLabel(String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>, Properties, SparseData) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
- initializeLabel(String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>, Properties, SparseData) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
initialize attributes on a per-label basis even if the data is the
same across all labels.
- initializePreLoad() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- initializeQueue(TreebankNode, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator
-
- initLCSes(String, String, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
compute the lcses and min path distance for the concept pair, if this
hasn't been done already
- initLcsIC(Map<String, Double>, SimilarityInfo, boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
get the best lcs and its information content if this hasn't been done
already.
- initLcsIC(String, String, Map<String, Double>, SimilarityInfo, boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
call initLCSes and initLcsIC
- initRegexMap(List<NamedEntityRegex>) - Method in class org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexAnnotator
-
- initRegexMap(List<SegmentRegex>) - Method in class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
-
- initTerminalNodes(TopTreebankNode, JCas) - Static method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- initWikiSim() - Method in class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- INJECTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- innerEvaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- innerEvaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ProductKernel
-
- innerEvaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
return the product of all the similarity metrics
- innerEvaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
concepts have overlapping semantic types? yes return 1, else return 0
- innerEvaluate(Object, Object) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SumKernel
-
- INPUT_FORMAT_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
"InputFormat" is a optional, single, boolean parameter that determines
whether or not the features associated with each word will be
loaded into the CAS or not.
- inputDir - Variable in class org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances.Options
-
- inputDir - Variable in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- inputDirectory - Static variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- inputDirectory - Variable in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls
-
- inputDirectory - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline.Options
-
- inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.Options
-
- inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline.Options
-
- inputDirectory - Variable in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.Options
-
- inputDirectory - Variable in class org.apache.ctakes.temporal.duration.EventDurationDistribution.Options
-
- inQuote(JCas, Annotation) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- insertAnnotationNode(JCas, TopTreebankNode, Annotation, String) - Static method in class org.apache.ctakes.constituency.parser.util.AnnotationTreeUtils
-
- insertAttribute(String, String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Inserts an (attribute, value) pair to this XcasAnnotation.
- insertAuiFirstWord(List<UmlsAuiFirstWord>) - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
- insertAuiFirstWord(List<UmlsAuiFirstWord>) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- insertChild(int, SimpleTree) - Method in class org.apache.ctakes.utils.tree.SimpleTree
-
- insertIntReference(String, int[]) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
- insertReference(String, XcasAnnotation) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
- insertString(DocumentFilter.FilterBypass, int, String, AttributeSet) - Method in class org.apache.ctakes.gui.pipeline.piper.PiperTextFilter
- insertUpdate(DocumentEvent) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
- INSTANCE_ID - Static variable in class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- InstanceClassInfo() - Constructor for class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- InstanceClassInfo(long, boolean, String) - Constructor for class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- InstanceData - Class in org.apache.ctakes.ytex.kernel
-
data structure to store instance ids, their classes, folds, runs, and labels.
- InstanceData() - Constructor for class org.apache.ctakes.ytex.kernel.InstanceData
-
- InstanceDataExporter - Interface in org.apache.ctakes.ytex.sparsematrix
-
- InstanceDataExporterImpl - Class in org.apache.ctakes.ytex.sparsematrix
-
output the instance data
- InstanceDataExporterImpl() - Constructor for class org.apache.ctakes.ytex.sparsematrix.InstanceDataExporterImpl
-
- instanceFeatureCount - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- instanceGatheringOutputDir - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- InstanceIDRowMapper() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl.InstanceIDRowMapper
-
- instanceLabel - Variable in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- InstanceTreeBuilder - Interface in org.apache.ctakes.ytex.kernel.tree
-
- InstanceTreeBuilderImpl - Class in org.apache.ctakes.ytex.kernel.tree
-
- InstanceTreeBuilderImpl() - Constructor for class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- INTEGER_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- IntegerCondition - Class in org.apache.ctakes.core.fsm.condition
-
- IntegerCondition() - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerCondition
-
- IntegerRange - Class in org.apache.ctakes.preprocessor
-
Defines a range of integers.
- IntegerRange() - Constructor for class org.apache.ctakes.preprocessor.IntegerRange
-
- IntegerRangeCondition - Class in org.apache.ctakes.core.fsm.condition
-
- IntegerRangeCondition(int, int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition
-
- IntegerRanges(String) - Constructor for class org.apache.ctakes.temporal.eval.CommandLine.IntegerRanges
-
- IntegerToken - Interface in org.apache.ctakes.core.fsm.token
-
- IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- IntegerTokenAdapter(NumToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter
-
- IntegerTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
- IntegerTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.IntegerTokenAdapter
-
- IntegerValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- IntegerValueCondition(int) - Constructor for class org.apache.ctakes.core.fsm.condition.IntegerValueCondition
-
- interInstanceDistance - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- intersects(int, int, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Returns true if one span intersects with the other
- INTJ - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- INTJ - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- INTJ - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- INTJ - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- INTJ() - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
-
Never called.
- INTJ(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
-
Internal - constructor used by generator
- INTJ(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
-
- INTJ(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ
-
- INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- INTJ_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An interjection
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- INTJ_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.INTJ_Type
-
initialize variables to correspond with Cas Type and Features
- INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRAARTERIAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRACARDIAC - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRAMUSCULAR - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRAPERITONEAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRATHECAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRATHECAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- INTRAVENOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- INTRINSIC_INFOCONTENT - Static variable in interface org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluator
-
- IntrinsicICInfo(ConcRel) - Constructor for class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- IntrinsicInfoContentEvaluator - Interface in org.apache.ctakes.ytex.kernel
-
- IntrinsicInfoContentEvaluatorImpl - Class in org.apache.ctakes.ytex.kernel
-
- IntrinsicInfoContentEvaluatorImpl() - Constructor for class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo - Class in org.apache.ctakes.ytex.kernel
-
- IntrinsicLCHMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
compute intrinsic LCH as in eqn 28 from
http://dx.doi.org/10.1016/j.jbi.2011.03.013
Scale to unit interval
- IntrinsicLCHMetric(ConceptSimilarityService, Double) - Constructor for class org.apache.ctakes.ytex.kernel.metric.IntrinsicLCHMetric
-
- IntrinsicPathMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
compute Intrinsic path distance.
- IntrinsicPathMetric(ConceptSimilarityService, Double) - Constructor for class org.apache.ctakes.ytex.kernel.metric.IntrinsicPathMetric
-
- IntrinsicRadaMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
compute Intrinsic rada distance as in eqn 23 from
http://dx.doi.org/10.1016/j.jbi.2011.03.013.
- IntrinsicRadaMetric(ConceptSimilarityService, Double) - Constructor for class org.apache.ctakes.ytex.kernel.metric.IntrinsicRadaMetric
-
- invalidate() - Method in class org.apache.ctakes.gui.component.CellRendererLabel
-
- invoke(MethodInvocation) - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- IRMetrics - Class in org.apache.ctakes.ytex.kernel
-
- IRMetrics() - Constructor for class org.apache.ctakes.ytex.kernel.IRMetrics
-
- IRMetrics(int, int, int, int) - Constructor for class org.apache.ctakes.ytex.kernel.IRMetrics
-
- isAcceptableBreak(String, int, int) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Allows subclasses to check an overzealous (read: poorly
trained) model from flagging obvious non-breaks as breaks based
on some boolean determination of a break's acceptability.
- isAlias() - Method in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- isAlphabetLetter(char) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
- isAnnotationPresentInSpan(JCas, int, int, int) - Static method in class org.apache.ctakes.core.util.FSUtil
-
returns a true if the annotation type is present in the span
- isAutoCommit() - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
- isBoolean(String) - Static method in class org.apache.ctakes.core.ae.RegexSectionizer
-
- isBoundary(Annotation, int) - Method in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- isBoundary(Annotation, int) - Method in class org.apache.ctakes.assertion.util.NegationManualDepContextAnalyzer
-
- isBoundary(Annotation, int) - Method in interface org.apache.ctakes.necontexts.ContextAnalyzer
-
This method is called by the ContextAnnotator.
- isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.ContextAnalyzerAdapter
-
- isBoundary(Annotation, int) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer
-
- isBoundary(Annotation, int) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer
-
- isCacheNorm() - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- isCellEditable(int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- isCellEditable(int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- isCellEditable(int, int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- isCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- isConnected() - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
- isConstrained(String, String) - Method in interface org.apache.ctakes.dictionary.lookup.strtable.FieldConstraint
-
- isConstrained(String, String) - Method in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- isCorpusIC() - Method in enum org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService.SimilarityMetricEnum
-
is this measure based on corpus IC?
- isDefinite(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isDemonstrative(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isDistantBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
-
Return true if exist other than "and" "or" "," (ignoring DRUG and PSE)
in input.substring(begin, end)
- isDistribution(Map<X, Double>) - Static method in class org.apache.ctakes.temporal.utils.SoftMaxUtil
-
- isDonorTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- isDrugBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
-
Return true if finds "DRUG" in input.substring(begin, end)
- isDrugBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
-
Return true if finds "DRUG" in input.substring(begin, end)
and assign offsets of DRUG to span
- isDrugBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return true if a drug is between begin and end
- isEmpty() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- isEmpty() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- isEmpty() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- isEmpty() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- isEmpty() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- isEmpty() - Method in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- isEmpty() - Method in class org.apache.ctakes.dictionary.lookup2.concept.DefaultConcept
- isEmpty() - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- isEmpty() - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- isEnclosed(RelationExtractorAnnotator.IdentifiedAnnotationPair, TreebankNode) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
Is this pair of entities enclosed inside a noun phrase?
- isFamilyTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- isGeneric(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isGoldPair(Annotation, Annotation) - Method in class org.apache.ctakes.coreference.util.GoldStandardLabeler
-
- isHistory(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- IsIndicatedFor - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- IsIndicatedFor - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- IsIndicatedFor - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- IsIndicatedFor - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- IsIndicatedFor() - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
Never called.
- IsIndicatedFor(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
Internal - constructor used by generator
- IsIndicatedFor(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
- IsIndicatedFor_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- IsIndicatedFor_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- IsIndicatedFor_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- IsIndicatedFor_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- IsIndicatedFor_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type
-
initialize variables to correspond with Cas Type and Features
- IsIndicatedForTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- IsIndicatedForTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- IsIndicatedForTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- IsIndicatedForTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- IsIndicatedForTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
Never called.
- IsIndicatedForTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
Internal - constructor used by generator
- IsIndicatedForTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
- IsIndicatedForTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- IsIndicatedForTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- IsIndicatedForTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- IsIndicatedForTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- IsIndicatedForTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- isInteger() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- isIntrinsicIC() - Method in enum org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService.SimilarityMetricEnum
-
is this measure based on intrinsic IC?
- isIntrinsicIC() - Method in class org.apache.ctakes.ytex.kernel.metric.LinMetric
-
- isInUpperCaseStringLine(JCas, IdentifiedAnnotation) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return true if the given NE belongs to the line consisting of a upper-cased string without " - "
- isKeyNameToLowerCase() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- isLeaf() - Method in class org.apache.ctakes.utils.tree.SimpleTree
-
- isLeaf() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- isLimitToRegex() - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- isMutable() - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- isMutable() - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- isNegated() - Method in class org.apache.ctakes.core.cc.pretty.cell.DefaultUmlsItemCell
- isNegated() - Method in class org.apache.ctakes.core.cc.pretty.cell.EventCell
- isNegated() - Method in interface org.apache.ctakes.core.cc.pretty.cell.UmlsItemCell
-
- isNegated(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isNormalizedLaplacian() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- isNumber(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Applies number rules to the given token.
- ISO8601Converter - Class in org.apache.ctakes.ytex.uima.mapper
-
convert ISO8601 formatted date to Date/Timestamp object
- ISO8601Converter() - Constructor for class org.apache.ctakes.ytex.uima.mapper.ISO8601Converter
-
- isOpaque() - Method in class org.apache.ctakes.gui.component.CellRendererPanel
-
Overridden for performance reasons.
- isOtherTerm(Annotation) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- isParameterMandatory(int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.DefaultParameterHolder
- isParameterMandatory(int) - Method in interface org.apache.ctakes.gui.pipeline.bit.parameter.ParameterHolder
-
- isParameterMandatory(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- isPatient(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isPreload() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- isPronoun(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- isPseBetween(int, int) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
-
Return true if finds "PSE" in input.substring(begin, end)
- isPseBetween(int, int, int[]) - Method in class org.apache.ctakes.sideeffect.util.PatternMatch
-
Return true if finds "PSE" in input.substring(begin, end)
and assign offsets of PSE to span
- isPSEBetween(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return true if a sign/symptom or disease/disorder is between begin and end
- isRarableToken(String) - Static method in class org.apache.ctakes.gui.dictionary.util.RareWordUtil
-
- isReadOnly() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperInfo
-
- isRoot() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- isRXNORMCui(String) - Method in interface org.apache.ctakes.ytex.umls.dao.UMLSDao
-
- isRXNORMCui(String) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- isSkip() - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Gets the value of the skip property.
- isSoftLabel() - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- isSpanInSameLine(JCas, int, int) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
Return true if the given offsets are in the same line
- isTaxonomy() - Method in enum org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService.SimilarityMetricEnum
-
is this measure taxonomy based?
- isTermMatch(RareWordTerm, List<FastLookupToken>, int, int) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator
-
Hopefully the jit will inline this method
- isTextTooLong(String, int, int, int) - Static method in class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- isTextTooShort(String, int) - Static method in class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- isTextValid(String) - Method in class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- isTfIdf() - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- isTitle(String) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isTrain() - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- isTrain() - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- isTrained - Variable in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- isTrained - Variable in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- isUncertain(IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- isUnknown(PipeBitInfo) - Static method in class org.apache.ctakes.core.pipeline.PipeBitInfoUtil
-
- isUpperCaseString(String) - Static method in class org.apache.ctakes.sideeffect.util.SEUtil
-
- isValidDate(String) - Static method in class org.apache.ctakes.temporal.ae.CrossSentenceTemporalRelationAnnotator
-
- isValidUMLSUser(String, String, String, String) - Static method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator
-
- isValidUMLSUser(String, String, String, String) - Static method in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- isValidUMLSUser(UimaContext, Properties) - Method in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
validate the UMLS license / user
- isValidUMLSUser(String, String, String, String) - Method in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
validate the UMLS license / user
- isWindowOk(Annotation) - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
Skip windows that are section headers/footers.
- isWindowOk(Annotation) - Method in interface org.apache.ctakes.dictionary.lookup2.ae.WindowProcessor
-
Some windows should be skipped entirely, such as "[section *]"
- ItemCell - Interface in org.apache.ctakes.core.cc.pretty.cell
-
Container class for information about an item (text, annotation, etc.) cell - used for calculating print layout.
- ItemRow - Interface in org.apache.ctakes.core.cc.pretty.row
-
A row of item cells that represent part of a sentence and its annotations
- iterator() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- iterator() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- iterator() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- iterator() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- iterator() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- iterator() - Method in class org.apache.ctakes.core.util.ListIterable
-
- iterator() - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
- iv_begin - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- iv_classification - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue
-
- iv_copulaSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_currentIndex - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- iv_end - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- iv_files - Variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- iv_logger - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
- iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
-
- iv_logger - Variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
- iv_modalVerbsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negAdjectivesSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negCollocSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negColPartSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negDeterminersSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negDetPlusPrepSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negParticlesSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negPrepositionsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_negVerbsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_recordID - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- iv_regNounsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_regPrepositionsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_regVerbsSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- iv_sentenceList - Variable in class org.apache.ctakes.smokingstatus.util.TruthValue
-
- iv_text - Variable in class org.apache.ctakes.smokingstatus.util.ClassifiableEntry
-
- iv_type - Variable in class org.apache.ctakes.preprocessor.Annotation
-
- L_POS_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- L_REL_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- L_TOK_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- Lab - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab
-
Never called.
- Lab(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab
-
Internal - constructor used by generator
- Lab(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab
-
- Lab_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Laboratory Procedures.
- Lab_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
initialize variables to correspond with Cas Type and Features
- LabDeltaFlag - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
Never called.
- LabDeltaFlag(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
Internal - constructor used by generator
- LabDeltaFlag(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
- LabDeltaFlag_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlag_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
-
initialize variables to correspond with Cas Type and Features
- LabDeltaFlagModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
Never called.
- LabDeltaFlagModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
Internal - constructor used by generator
- LabDeltaFlagModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
- LabDeltaFlagModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
- LabDeltaFlagModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.
- LabDeltaFlagModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type
-
initialize variables to correspond with Cas Type and Features
- labelsPattern - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- labelToClassIndexMap - Variable in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
map of label - [class name - class index]
- LabEstimatedModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
Never called.
- LabEstimatedModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
Internal - constructor used by generator
- LabEstimatedModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
- LabEstimatedModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
- LabEstimatedModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Signals that the lab value was estimated, e.g., "GFR (estimated): 81".
- LabEstimatedModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
-
initialize variables to correspond with Cas Type and Features
- LabInterpretationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
Never called.
- LabInterpretationModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
Internal - constructor used by generator
- LabInterpretationModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
- LabInterpretationModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
- LabInterpretationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Test result interpretations organized in a valued list e.g., "rare cells seen" or "few cells seen" in urinalysis, now combined with very_abnormal and abnormal.
- LabInterpretationModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
-
initialize variables to correspond with Cas Type and Features
- LabMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabMention
-
Never called.
- LabMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabMention
-
Internal - constructor used by generator
- LabMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabMention
-
- LabMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabMention
-
- LabMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Lab) Event.
- LabMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
initialize variables to correspond with Cas Type and Features
- LabReferenceRange - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
Never called.
- LabReferenceRange(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
Internal - constructor used by generator
- LabReferenceRange(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
- LabReferenceRange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Holds a narrative (i.e.
- LabReferenceRange_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
-
initialize variables to correspond with Cas Type and Features
- LabReferenceRangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
Never called.
- LabReferenceRangeModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
Internal - constructor used by generator
- LabReferenceRangeModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
- LabReferenceRangeModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
- LabReferenceRangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Holds a narrative (i.e.
- LabReferenceRangeModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type
-
initialize variables to correspond with Cas Type and Features
- LabValue - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue() - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue
-
Never called.
- LabValue(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue
-
Internal - constructor used by generator
- LabValue(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue
-
- LabValue_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Quantitative results of a laboratory, with number and unit.
- LabValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
initialize variables to correspond with Cas Type and Features
- LabValueModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
Never called.
- LabValueModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
Internal - constructor used by generator
- LabValueModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
- LabValueModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
- LabValueModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Quantitative results of a laboratory, with number and unit.
- LabValueModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type
-
initialize variables to correspond with Cas Type and Features
- lambda - Static variable in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel
-
- lambda - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- lambdaSquared - Static variable in class org.apache.ctakes.constituency.parser.treekernel.TreeKernel
-
- lastLabel - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- launchThatViewer(String, TypeSystem, String[], boolean, boolean, boolean, File, File) - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
copied from AnnotationViewerDialog.
- launchThatViewer(String, String, TypeSystem, String[], boolean, boolean, boolean, File, File) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
- LCHMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
- LCHMetric(ConceptSimilarityService, Integer) - Constructor for class org.apache.ctakes.ytex.kernel.metric.LCHMetric
-
- lcs(String, String, List<LCSPath>) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
- lcs(String, String, List<LCSPath>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- LCSPath - Class in org.apache.ctakes.ytex.kernel.metric
-
- LCSPath() - Constructor for class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- LEFT - Static variable in class org.apache.ctakes.gui.component.TextLineNumber
-
- LEFT_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
- leftScopeSize - Variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
- Lemma - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma() - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma
-
Never called.
- Lemma(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma
-
Internal - constructor used by generator
- Lemma(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma
-
- Lemma_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stores a lemma (canonical form of a token).
- Lemma_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
initialize variables to correspond with Cas Type and Features
- lemmatize(String, String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Lemmatize word using ClearNLP lemmatizer.
- lemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- lemmatizerDataFile - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- length() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- LF - Static variable in class org.apache.ctakes.core.sentence.SentenceSpan
-
- LF - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- LibSVMFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- LibSVMFormatterFactory - Class in org.apache.ctakes.ytex.libsvm
-
- LibSVMFormatterFactory() - Constructor for class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory
-
- LibSVMFormatterFactory.LibSVMFormatter - Class in org.apache.ctakes.ytex.libsvm
-
- LibSVMGramMatrixExporter - Interface in org.apache.ctakes.ytex.libsvm
-
- LibSVMGramMatrixExporterImpl - Class in org.apache.ctakes.ytex.libsvm
-
export gram matrix for libsvm.
- LibSVMGramMatrixExporterImpl() - Constructor for class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- LibSVMParser - Class in org.apache.ctakes.ytex.libsvm
-
- LibSVMParser() - Constructor for class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- LibSVMUtil - Interface in org.apache.ctakes.ytex.libsvm
-
- LibSVMUtilImpl - Class in org.apache.ctakes.ytex.libsvm
-
- LibSVMUtilImpl() - Constructor for class org.apache.ctakes.ytex.libsvm.LibSVMUtilImpl
-
- LINE_DIVIDER_TAG - Static variable in class org.apache.ctakes.core.ae.RegexSectionizer
-
- LineAndTokenPosition - Class in org.apache.ctakes.assertion.stub
-
- LineAndTokenPosition() - Constructor for class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- LinearKernel - Class in org.apache.ctakes.utils.kernel
-
- LinearKernel() - Constructor for class org.apache.ctakes.utils.kernel.LinearKernel
-
- LinearKernel(boolean) - Constructor for class org.apache.ctakes.utils.kernel.LinearKernel
-
- LinearKernelMatrixWriter - Class in org.apache.ctakes.coreference.treekernel.training
-
- LinearKernelMatrixWriter(String, String) - Constructor for class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter
-
- linePatt - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.BrownClusterFeatureFunction
-
- LinesFromFileCollectionReader - Class in org.apache.ctakes.core.cr
-
The original code was copied from org.apache.uima.examples.cpe.FileSystemCollectionReader
and modified for Mayo use.
- LinesFromFileCollectionReader() - Constructor for class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
- LinesFromFileStringsResourceImpl - Class in org.apache.ctakes.core.resource
-
Reads in an array of Strings from a file - each line in the file is a string.
- LinesFromFileStringsResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl
-
- LineTokenToCharacterOffsetConverter - Class in org.apache.ctakes.assertion.stub
-
- LineTokenToCharacterOffsetConverter(String) - Constructor for class org.apache.ctakes.assertion.stub.LineTokenToCharacterOffsetConverter
-
- LineTokenToCharacterOffsetConverter.BeginAndEndCharacterOffsetPair - Class in org.apache.ctakes.assertion.stub
-
- LinKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- LinKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.LinKernel
-
- LinMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
compute corpus-ic or intrinsic-ic based lin measure.
- LinMetric(ConceptSimilarityService, boolean) - Constructor for class org.apache.ctakes.ytex.kernel.metric.LinMetric
-
- LIQUID - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- List - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List() - Constructor for class org.apache.ctakes.typesystem.type.textspan.List
-
Never called.
- List(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List
-
Internal - constructor used by generator
- List(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List
-
- List(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List
-
- List_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A semi-structured text span, containing other Annotations (typically Sentences, other Lists, etc).
- List_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.List_Type
-
initialize variables to correspond with Cas Type and Features
- LIST_TYPES_PATH - Static variable in class org.apache.ctakes.core.ae.ListAnnotator
-
- ListAndConjunctionAe() - Constructor for class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe
-
- ListAnnotator - Class in org.apache.ctakes.core.ae
-
- ListAnnotator() - Constructor for class org.apache.ctakes.core.ae.ListAnnotator
-
- listContentsAll(File) - Static method in class org.mitre.medfacts.uima.RunZoner
-
- listContentsXmiOnly(File) - Static method in class org.mitre.medfacts.uima.RunZoner
-
- ListEntry - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry() - Constructor for class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
Never called.
- ListEntry(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
Internal - constructor used by generator
- ListEntry(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
- ListEntry(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
- ListEntry_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a list entry, typically a single line in a multiline List.
- ListEntry_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.ListEntry_Type
-
initialize variables to correspond with Cas Type and Features
- ListEntryNegator - Class in org.apache.ctakes.core.ae
-
Sets negation for disease/disorder and sign/symptom annotations in lists.
- ListEntryNegator() - Constructor for class org.apache.ctakes.core.ae.ListEntryNegator
-
- ListFactory - Class in org.apache.ctakes.core.util
-
Factory to build List of built-in CAS types such as FloatList, IntegerList,
StringList, and FSList.
- ListFactory() - Constructor for class org.apache.ctakes.core.util.ListFactory
-
- ListFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ListFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.ListFeaturesExtractor
-
- ListIterable<T> - Class in org.apache.ctakes.core.util
-
- ListIterable(FSList) - Constructor for class org.apache.ctakes.core.util.ListIterable
-
- ListSentenceFixer - Class in org.apache.ctakes.core.ae
-
- ListSentenceFixer() - Constructor for class org.apache.ctakes.core.ae.ListSentenceFixer
-
- load(URI) - Method in class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- load(URI) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- load(DataResource) - Method in class org.apache.ctakes.core.resource.FileResourceImpl
-
- load(DataResource) - Method in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
- load(DataResource) - Method in class org.apache.ctakes.core.resource.LinesFromFileStringsResourceImpl
-
- load(DataResource) - Method in class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl
-
Loads a Lucene index for reading.
- load(DataResource) - Method in class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl
-
Loads data from a file.
- load(DataResource) - Method in class org.apache.ctakes.core.resource.StringMapResourceImpl
-
Loads data from a file.
- load(String) - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
Loads text from a file.
- load(String) - Static method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
Loads text from a file.
- load(DataResource) - Method in class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl
-
- load(String) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver
-
Loads text from a file.
- load(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- load(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- load(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- load(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.OddsRatioFeatureSelection
-
- load(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- load(DataResource) - Method in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
- LOAD_WORDS_ONLY_PARAM - Static variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
"LoadWordsOnly" is a optional, single, boolean parameter that determines
whether or not the part-of-speech tags associated with each word will be
loaded into the CAS or not.
- loadClassIdMap(File, String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- loadClassInfo(File, String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- loadClassLabels(String, Set<String>) - Method in interface org.apache.ctakes.ytex.libsvm.LibSVMUtil
-
- loadClassLabels(String, Set<String>) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMUtilImpl
-
- loadConceptFilter(String, int, Map<String, Double>) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
For the given label and cutoff, get the corresponding concepts whose
propagated ig meets the threshold.
- loadConceptFilter(String, int, Map<String, Double>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
For the given label and cutoff, get the corresponding concepts whose
propagated ig meets the threshold.
- loadData(BagOfWordsData, String, String, BagOfWordsDecorator) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- loadData(InstanceData, String, String, String, String, BagOfWordsDecorator, String, Integer, Integer) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- loadDescription(String) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
Simple method to load xml description and return an AnalysisEngineDescription object
- loadDocument() - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- loadDocument() - Method in class org.apache.ctakes.ytex.web.search.FullTextDocumentViewBean
-
- loadDocumentIds() - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- loadEnabledFeaturesFromFile(File) - Static method in class org.apache.ctakes.assertion.stub.BatchRunner
-
- Loader - Class in org.apache.ctakes.jdl.data.loader
-
Abstract Loader.
- Loader() - Constructor for class org.apache.ctakes.jdl.data.loader.Loader
-
- loadGramMatrix(SortedSet<Long>, String, String, String, String, int, int, double, String) - Method in interface org.apache.ctakes.ytex.kernel.KernelUtil
-
- loadGramMatrix(SortedSet<Long>, String, String, String, String, int, int, double, String) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- loadHyphMap(String) - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
Loads hyphenated words and a frequency value for each, from a file.
- loadIcon(String, int) - Static method in class org.apache.ctakes.gui.util.IconLoader
-
- loadIcon(String) - Static method in class org.apache.ctakes.gui.util.IconLoader
-
- loadIcons() - Method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
- loadInputStream(String) - Method in class org.apache.ctakes.jdl.common.PropertiesFile
-
External.
- loadInstanceClassInfo(File, String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- loadInstances(String) - Method in interface org.apache.ctakes.ytex.kernel.KernelUtil
-
read query
- loadInstances(String) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
this can be very large - avoid loading the entire jdbc ResultSet into
memory
- loadInstanceTrees(TreeMappingInfo) - Method in interface org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilder
-
Generate trees from the results of a sorted query
- loadInstanceTrees(String) - Method in interface org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilder
-
- loadInstanceTrees(String) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- loadInstanceTrees(TreeMappingInfo) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- loadInstanceTrees(String, QueryMappingInfo, Map<NodeKey, Node>) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- loadPipelineFile(String) - Method in class org.apache.ctakes.core.pipeline.PiperFileReader
-
Load a file with command parameter pairs for building a pipeline
- loadProperties(String, Properties) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- loadProperties(String, boolean) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
- loadProperties(String, Properties) - Method in interface org.apache.ctakes.ytex.kernel.KernelUtil
-
- loadProperties(String, Properties) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- loadProps(File) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
load properties from outputDir/options.properties.
- loadResourceAsStream(String) - Method in class org.apache.ctakes.jdl.common.PropertiesFile
-
Internal.
- loadSections() - Method in class org.apache.ctakes.core.ae.BsvRegexSectionizer
-
Load Sections in a manner appropriate for the Regex Sectionizer
- loadSections() - Method in class org.apache.ctakes.core.ae.RegexSectionizer
-
Load Sections in a manner appropriate for the Regex Sectionizer
- LoadType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for loadType complex type.
- LoadType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.LoadType
-
- LoadType.Csv - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for anonymous complex type.
- LoadType.Xml - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for anonymous complex type.
- locateFile(String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
- locateFile(Class<?>, String) - Static method in class org.apache.ctakes.core.resource.FileLocator
-
- LocationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf
-
Never called.
- LocationOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf
-
Internal - constructor used by generator
- LocationOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf
-
- LocationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- LocationOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOf_Type
-
initialize variables to correspond with Cas Type and Features
- LocationOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
- LocationOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator
-
- LocationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- LocationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- LocationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- LocationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- LocationOfTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
Never called.
- LocationOfTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
Internal - constructor used by generator
- LocationOfTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
- LocationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- LocationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- LocationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- LocationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- LocationOfTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- log - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- logClassificationErrors(File, String) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties
-
- logClassificationErrors(File, String) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- logClassificationErrors(File, String) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- logger - Variable in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
-
- logger - Variable in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
-
- logger - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- logger - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
-
- logger - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- logger - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- logger - Variable in class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine
-
- logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- logger - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- logger - Variable in class org.apache.ctakes.dependency.parser.util.ClearDependencyUtility
-
- logger - Static variable in class org.apache.ctakes.dependency.parser.util.DependencyUtility
-
- logger - Variable in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- logger - Static variable in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- logger - Static variable in class org.apache.ctakes.temporal.eval.RemoveTreeAlignedMentions
-
- logger - Static variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- logger - Variable in class org.mitre.medfacts.uima.ZoneAnnotator
-
- LoggerPanel - Class in org.apache.ctakes.gui.component
-
- lookup(List<LookupToken>, Map<String, List<LookupAnnotation>>) - Method in class org.apache.ctakes.dictionary.lookup.algorithms.DirectPassThroughImpl
-
Lookup the given text specified via LookupToken objects.
- lookup(List<LookupToken>, Map<String, List<LookupAnnotation>>) - Method in class org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl
-
Lookup the given text specified via LookupToken objects.
- lookup(List<LookupToken>, Map<String, List<LookupAnnotation>>) - Method in interface org.apache.ctakes.dictionary.lookup.algorithms.LookupAlgorithm
-
Lookup the given text specified via LookupToken objects.
- LookupAlgorithm - Interface in org.apache.ctakes.dictionary.lookup.algorithms
-
Generic interface to specific lookup algorithm implementations.
- LookupAnnotation - Interface in org.apache.ctakes.dictionary.lookup.vo
-
Value object that models a text annotation.
- LookupAnnotationToJCasAdapter - Class in org.apache.ctakes.dictionary.lookup.ae
-
- LookupAnnotationToJCasAdapter(Annotation) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupAnnotationToJCasAdapter
-
- LookupAnnotationToTokAdapter - Class in org.apache.ctakes.dictionary.lookup.vo
-
- LookupAnnotationToTokAdapter(Token) - Constructor for class org.apache.ctakes.dictionary.lookup.vo.LookupAnnotationToTokAdapter
-
- lookupByAddress(int) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- lookupConceptType(FSArray) - Static method in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- LookupConsumer - Interface in org.apache.ctakes.dictionary.lookup.ae
-
Defines how to consume the lookup hits produced by the LookupAnnotator.
- LookupHit - Class in org.apache.ctakes.dictionary.lookup.vo
-
Represents a single hit found by a lookup algorithm.
- LookupHit(MetaDataHit, int, int) - Constructor for class org.apache.ctakes.dictionary.lookup.vo.LookupHit
-
- LookupInitializer - Interface in org.apache.ctakes.dictionary.lookup.ae
-
Defines how to initialize the LookupAnnotator.
- LookupParseUtilities - Class in org.apache.ctakes.dictionary.lookup.ae
-
- LookupParseUtilities() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
-
- LookupParseUtilitiesRefactor - Class in org.apache.ctakes.dictionary.lookup.ae
-
- LookupSpec - Class in org.apache.ctakes.dictionary.lookup.ae
-
A container for three related classes used to lookup terms in a dictionary and process hits found.
- LookupSpec(LookupAlgorithm, LookupInitializer, LookupConsumer) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.LookupSpec
-
- LookupToken - Interface in org.apache.ctakes.dictionary.lookup.vo
-
This object represents the SMALLEST span of text that could potentially
be a lookup hit.
- lookupTokenAdapterCtor - Variable in class org.apache.ctakes.ytex.uima.lookup.ae.FirstTokenPermLookupInitializerImpl
-
- LookupTokenComparator - Enum in org.apache.ctakes.dictionary.lookup.vo
-
Comparator that sorts LookupToken objects by their start and end offsets.
- LookupUtil - Class in org.apache.ctakes.dictionary.lookup2.util
-
Author: SPF
Affiliation: CHIP-NLP
Date: 12/16/13
- LookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
Never called.
- LookupWindowAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
Internal - constructor used by generator
- LookupWindowAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
- LookupWindowAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
- LookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Defines a window within which dictionary terms may match.
- LookupWindowAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- LOTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- lowercaseWords(SimpleTree) - Static method in class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- LOZENGE - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- LST - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- LST - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- LST - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- LST - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- LST() - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST
-
Never called.
- LST(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST
-
Internal - constructor used by generator
- LST(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST
-
- LST(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST
-
- LST_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- LST_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- LST_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- LST_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A list item, usually intra-sentential
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- LST_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.LST_Type
-
initialize variables to correspond with Cas Type and Features
- LT_KEY_USE_FOR_LOOKUP - Static variable in class org.apache.ctakes.dictionary.lookup.algorithms.FirstTokenPermutationImpl
-
Key value for LookupToken attribute.
- LT_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- LT_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- LTEQ_OP - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- LTEQ_OP - Static variable in class org.apache.ctakes.dictionary.lookup.strtable.FieldConstraintImpl
-
- LuceneCollectionReader - Class in org.apache.ctakes.core.cr
-
- LuceneCollectionReader() - Constructor for class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- LuceneDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup.lucene
-
- LuceneDictionaryImpl(IndexSearcher, String) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl
-
Constructor
- LuceneDictionaryImpl(IndexSearcher, String, int) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDictionaryImpl
-
Constructor
- LuceneDocumentMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup.lucene
-
- LuceneDocumentMetaDataHitImpl(Document) - Constructor for class org.apache.ctakes.dictionary.lookup.lucene.LuceneDocumentMetaDataHitImpl
-
- LuceneIndexReaderResource - Interface in org.apache.ctakes.core.resource
-
- LuceneIndexReaderResourceImpl - Class in org.apache.ctakes.core.resource
-
Oct 2010 - convert to lucene 3.0.2
- LuceneIndexReaderResourceImpl() - Constructor for class org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl
-
- LVG_BASE_TOKEN_ANNOTATOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- LvgAnnotator - Class in org.apache.ctakes.lvg.ae
-
UIMA annotator that uses the UMLS LVG package to find the canonical form of
WordTokens.
- LvgAnnotator() - Constructor for class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- LvgBaseTokenAnnotator - Class in org.apache.ctakes.lvg.ae
-
UIMA annotator that uses the UMLS LVG package to find the canonical form of
BaseTokens.
- LvgBaseTokenAnnotator() - Constructor for class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
- LvgCmdApiResource - Interface in org.apache.ctakes.lvg.resource
-
- LvgCmdApiResourceImpl - Class in org.apache.ctakes.lvg.resource
-
Loads NLM Lvg and Norm, reading configuration information
from a config (properties) file
Since the value of the LVG_DIR property in the lvg properties file
must be either a hard coded absolute pathname or the value AUTO_MODE,
and we want to support installing this project in a directory of the
user's choice, we avoid using a hardcoded pathname and choose to
use LVG_DIR=AUTO_MODE in the properties file.
- LvgCmdApiResourceImpl() - Constructor for class org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl
-
- m1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- m2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
This main method is only for testing purposes.
- main(String[]) - Static method in class org.apache.ctakes.assertion.cr.NegExAnnotation
-
test a single line
- main(String[]) - Static method in class org.apache.ctakes.assertion.cr.NegExCorpusReader
-
This main method is only for testing purposes.
- main(String[]) - Static method in class org.apache.ctakes.assertion.cr.RelationInfo
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- main(String[]) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionSampleFeatureGenerator
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.CreateAssertionDescriptor
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.CueWordTest2
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.medfacts.ConvertXMIAssertionsToi2b2Format
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.CrossValidateAttributeModels
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.CrossValidateChi2GridSearch
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.JustJudgeStep
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.PolarityCotrainingTests
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTests
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.ReadAndPreprocessForAttributeModels
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.ReadPreprocessTrainTestJudge
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.TestAttributeModels
-
- main(String[]) - Static method in class org.apache.ctakes.assertion.train.TrainAttributeModels
-
- main(String...) - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory
-
- main(String[]) - Static method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls
-
- main(String[]) - Static method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfCUIsGenerator
-
- main(String[]) - Static method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
-
- main(String[]) - Static method in class org.apache.ctakes.constituency.parser.util.CommandLineParserUtil
-
- main(String[]) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
Train a new sentence detector from the training data in the first file
and write the model to the second file.
The training data file is expected to have one sentence per line.
- main(String[]) - Static method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
This main method is only for testing purposes.
- main(String[]) - Static method in class org.apache.ctakes.core.cc.CASConsumerTestDriver
-
- main(String[]) - Static method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl
-
Simple tests of TextModification
Output expected:
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
UNSUPPORTED: TextModification with offset changes.
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: (new text not generated, see previous messages)
Non-Hodgkin Orig: 0-12 New: 0-11
x-ray Orig: 19-25 New: 18-23
non-small-cell Orig: 38-53 New: 36-50
Orig: Non Hodgkin's the x ray without any non small cell complications.
New: Non-Hodgkin's the x-ray without any non-small-cell complications.
Non-Hodgkin Orig: 0-11 New: 0-11
x-ray Orig: 18-23 New: 18-23
non-small-cell Orig: 36-50 New: 36-50
Note the case of the words doesn't matter.
- main(String[]) - Static method in class org.apache.ctakes.core.cpe.CmdLineCpeRunner
-
- main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.ContractionsPTB
-
- main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
-
- main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
-
- main(String[]) - Static method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
-
- main(String[]) - Static method in class org.apache.ctakes.core.pipeline.GenerateSentenceBIODescriptors
-
- main(String...) - Static method in class org.apache.ctakes.core.pipeline.PiperFileRunner
-
- main(String[]) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Trains a new sentence detection model.
- main(String[]) - Static method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.eval.helpers.Test
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.KernelMatrixCompositor
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter
-
- main(String[]) - Static method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
-
- main(String[]) - Static method in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- main(String[]) - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- main(String[]) - Static method in class org.apache.ctakes.examples.pipeline.HelloWorldAggregatePipeline
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.HelloWorldBuilderRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.HelloWorldCuiPiperRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.HelloWorldPiperRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.HelloWorldPropsPiperRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.ProcessDirBuilderRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.ProcessDirPiperRunner
-
- main(String...) - Static method in class org.apache.ctakes.examples.pipeline.ProcessLinesClinicalRunner
-
- main(String...) - Static method in class org.apache.ctakes.gui.dictionary.DictionaryCreator
-
- main(String...) - Static method in class org.apache.ctakes.gui.pipeline.PiperCreator
-
- main(String[]) - Static method in class org.apache.ctakes.jdl.App
-
- main(String[]) - Static method in class org.apache.ctakes.jdl.AppMain
-
- main(String[]) - Static method in class org.apache.ctakes.postagger.TagDictionaryCreator
-
Read a file containing POS-tagged tokens in OpenNLP format,
and output a tagDictionary (OpenNLP format)
Example input:
winning_JJ body_NN
winning_VBG
Example output:
body NN
winning JJ VBG
- main(String[]) - Static method in class org.apache.ctakes.preprocessor.test.TestDriver
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.analysis.EventAndEntityViewer
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.analysis.GoldRelationViewer
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.analysis.Utils
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.GoldAnnotationAnalysisPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Splitter
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.data.Stats
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorPipelineSingleCas
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorTrain
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer
-
- main(String[]) - Static method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- main(String[]) - Static method in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
-
keywordsFile and stopwordsFile must point to the files in the resources
dataFile is your own sentence-level data in the format (class_label: C,
P, S): sentence|class_label sentence|class_label ...
- main(String[]) - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
Just runs reader over files.
- main(String[]) - Static method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.CompareFeatureStructures
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.ExtractDoctimerelPairProbabilities
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.GoldRelationViewer
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.PrintFailedTimeNormalizations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.PrintInconsistentAnnotations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.PrintNonrelatedEvents
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.RelationContextViewerPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.data.analysis.TimexTreeAlignmentStatistics
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.duration.EventDurationDistribution
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.duration.EventEventDurationStatistics
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.duration.EventTimeDurationStatistics
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.eval.PrintRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.DtrRelPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventRelPositionPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.EventEventRelPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.EventTimeRelPositionPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.EventTimeRelPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinter
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinterWithLabels
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.pipelines.EventAndTimeExtractionPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.pipelines.EventExtractionPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.pipelines.EventPrintingPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.pipelines.FullTemporalExtractionPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.pipelines.TimeExtractionPipeline
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.utils.CheckKnowtatorAnnotations
-
- main(String[]) - Static method in class org.apache.ctakes.temporal.utils.RunCorpusDiagnostics
-
- main(String[]) - Static method in class org.apache.ctakes.utils.distsem.DistanceMetrics
-
- main(String[]) - Static method in class org.apache.ctakes.utils.tree.SimpleTree
-
- main(String[]) - Static method in class org.apache.ctakes.utils.wiki.TestCosineSimilarity
-
- main(String[]) - Static method in class org.apache.ctakes.utils.xcas_comparison.Compare
-
- main(String[]) - Static method in class org.apache.ctakes.utils.xcas_comparison.ConvertAndCompare
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.ClassifierEvalUtil
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
create a concept graph.
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.evaluator.TreePrinter
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.RRFtoWideTab
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.KernelLauncher
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.tools.DBPing
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.tools.ExportCAS
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.tools.RunCPE
-
main class.
- main(String[]) - Static method in class org.apache.ctakes.ytex.tools.SetupAuiFirstWord
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
Train a new sentence detector from the training data in the first file
and write the model to the second file.
The training data file is expected to have one sentence per line.
- main(String[]) - Static method in class org.apache.ctakes.ytex.weka.ExportBagOfWords
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.weka.ExportGramMatrix
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.weka.ImportWekaResults
-
- main(String[]) - Static method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- main(String[]) - Static method in class org.mitre.medfacts.uima.CreateAssertionZonerDescriptors
-
- main(String[]) - Static method in class org.mitre.medfacts.uima.CreateZonerDescriptor
-
- main(String[]) - Static method in class org.mitre.medfacts.uima.RunZoner
-
- makeFeatures(String) - Method in class org.apache.ctakes.smokingstatus.MLutil.GenerateTrainingData
-
set "features" - list of features.
- makeSentence(JCas, int, int) - Static method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- ManagesTreats - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ManagesTreats - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ManagesTreats - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ManagesTreats - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ManagesTreats() - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
Never called.
- ManagesTreats(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
Internal - constructor used by generator
- ManagesTreats(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
- ManagesTreats_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ManagesTreats_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ManagesTreats_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ManagesTreats_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ManagesTreats_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type
-
initialize variables to correspond with Cas Type and Features
- ManagesTreatsRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
Identifies manages/treats relation.
- ManagesTreatsRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.ManagesTreatsRelationExtractorAnnotator
-
- ManagesTreatsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ManagesTreatsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ManagesTreatsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ManagesTreatsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ManagesTreatsTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
Never called.
- ManagesTreatsTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
Internal - constructor used by generator
- ManagesTreatsTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
- ManagesTreatsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ManagesTreatsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ManagesTreatsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ManagesTreatsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ManagesTreatsTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- ManifestationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf() - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
Never called.
- ManifestationOf(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
Internal - constructor used by generator
- ManifestationOf(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
- ManifestationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- ManifestationOf_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type
-
initialize variables to correspond with Cas Type and Features
- ManifestationOfRelationExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
Identifies manifestation_of relation.
- ManifestationOfRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.ManifestationOfRelationExtractorAnnotator
-
- ManifestationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- ManifestationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- ManifestationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- ManifestationOfTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- ManifestationOfTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
Never called.
- ManifestationOfTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
Internal - constructor used by generator
- ManifestationOfTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
- ManifestationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- ManifestationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- ManifestationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- ManifestationOfTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- ManifestationOfTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- mapByAddress - Variable in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- mapConfidenceToBoolean() - Static method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience
-
- MapFactory - Class in org.apache.ctakes.utils.struct
-
- MapFactory() - Constructor for class org.apache.ctakes.utils.struct.MapFactory
-
- mapI2B2AssertionValueToCtakes(String, IdentifiedAnnotation) - Static method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- Mapper - Class in org.apache.ctakes.core.util
-
Map various category names to their ctakes integer id.
- Mapper() - Constructor for class org.apache.ctakes.core.util.Mapper
-
- MapperConfig - Class in org.apache.ctakes.ytex.uima.mapper
-
semi-ugly hack to communicate options from the MapperService to the
individual Mappers.
- MapperConfig(Set<String>, int) - Constructor for class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- mapRow(ResultSet, int) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl.InstanceIDRowMapper
-
- mapRow(ResultSet, int) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl.ConceptFirstWordRowMapper
-
- mapRow(ResultSet, int) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl.DocumentSearchResultMapper
-
- mapThyme - Variable in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- Markable - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- Markable() - Constructor for class org.apache.ctakes.coreference.type.Markable
-
Never called.
- Markable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.Markable
-
Internal - constructor used by generator
- Markable(JCas) - Constructor for class org.apache.ctakes.coreference.type.Markable
-
- Markable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.Markable
-
- Markable - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable() - Constructor for class org.apache.ctakes.typesystem.type.textsem.Markable
-
Never called.
- Markable(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Markable
-
Internal - constructor used by generator
- Markable(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Markable
-
- Markable(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Markable
-
- Markable_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- Markable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.Markable_Type
-
initialize variables to correspond with Cas Type and Features
- Markable_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A type for representing text spans that can potentially be linked together via coreference.
- Markable_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Markable_Type
-
initialize variables to correspond with Cas Type and Features
- MarkableConfidenceComparator() - Constructor for class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.MarkableConfidenceComparator
-
- MarkableDepheadPairComparator() - Constructor for class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator.MarkableDepheadPairComparator
-
- MarkableDepUtils - Class in org.apache.ctakes.coreference.util
-
- MarkableDepUtils() - Constructor for class org.apache.ctakes.coreference.util.MarkableDepUtils
-
- MarkableHeadTreeCreator - Class in org.apache.ctakes.coreference.ae
-
- MarkableHeadTreeCreator() - Constructor for class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator
-
- MarkableHeadTreeCreator.MarkableDepheadPairComparator - Class in org.apache.ctakes.coreference.ae
-
- markableNode(JCas, int, int, TreebankNode) - Static method in class org.apache.ctakes.coreference.util.MarkableDepUtils
-
- markableNode(JCas, int, int) - Static method in class org.apache.ctakes.coreference.util.MarkableTreeUtils
-
- MarkablePair - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- MarkablePair() - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
-
Never called.
- MarkablePair(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
-
Internal - constructor used by generator
- MarkablePair(JCas) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair
-
- MarkablePair_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- MarkablePair_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePair_Type
-
initialize variables to correspond with Cas Type and Features
- MarkablePairConfidenceComparator() - Constructor for class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator.MarkablePairConfidenceComparator
-
- MarkablePairSet - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- MarkablePairSet() - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
-
Never called.
- MarkablePairSet(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
-
Internal - constructor used by generator
- MarkablePairSet(JCas) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
-
- MarkablePairSet(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet
-
- MarkablePairSet_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- MarkablePairSet_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
initialize variables to correspond with Cas Type and Features
- MarkableSalienceAnnotator - Class in org.apache.ctakes.coreference.ae
-
- MarkableSalienceAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.MarkableSalienceAnnotator
-
- MarkableTreeUtils - Class in org.apache.ctakes.coreference.util
-
- MarkableTreeUtils() - Constructor for class org.apache.ctakes.coreference.util.MarkableTreeUtils
-
- MarkableUtilities - Class in org.apache.ctakes.coreference.util
-
- MarkableUtilities() - Constructor for class org.apache.ctakes.coreference.util.MarkableUtilities
-
- mat - Variable in class org.apache.ctakes.sideeffect.util.PatternMatch
-
- matcher(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- matches(String) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- matchingType(CEAFType) - Static method in enum org.apache.ctakes.coreference.eval.helpers.MatType
-
- MatType - Enum in org.apache.ctakes.coreference.eval.helpers
-
- MAX - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- MAX_LEFT_SCOPE_SIZE_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"MaxLeftScopeSize" is a required, single, integer parameter that
specifies the maximum size of the left scope.
- MAX_RIGHT_SCOPE_SIZE_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"MaxRightScopeSize" is a required, single, integer parameter that
specifies the maximum size of the right scope.
- maxAttributeIndex - Variable in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
1-based attribute index
- MaxContext - Class in org.apache.ctakes.core.cleartk
-
- MaxContext(CleartkExtractor.Context...) - Constructor for class org.apache.ctakes.core.cleartk.MaxContext
-
Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts
into a bag of features where all features have the same name.
- MaxentParserWrapper - Class in org.apache.ctakes.constituency.parser
-
- MaxentParserWrapper(InputStream) - Constructor for class org.apache.ctakes.constituency.parser.MaxentParserWrapper
-
- MAXIMUM_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- MD_KEY_ADMIT_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_CUSTOMER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DISCHARGE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DOC_CONFIDENTIAL_IND - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DOC_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DOC_LINK_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DOC_REVISION_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_DOC_STATUS_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_EVENT_TYPE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_FACILITY_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_HISTORY_SECTION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_LOCATION - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_MINUTES_COUNSELING - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_NOTE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PATIENT_CITY - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PATIENT_CNT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PATIENT_STATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PATIENT_STREET_ADDR - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PATIENT_ZIP - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PROVIDER2_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PROVIDER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_BILLING_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_BIRTH_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_BMI - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_BSA - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_GENDER - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_HEAD_CIRCUMFERENCE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_HEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_RESPIRATORY_RATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_TEMPERATURE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_PT_WEIGHT - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_REV_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_SERVICE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_SIGNATURE_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_SIGNATURE_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_SITE_CODE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_TOTAL_TIME - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_TRANSCRIBER_ID - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MD_KEY_TRANSCRIPTION_DATE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- MeasurementAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- MeasurementAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- MeasurementAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- MeasurementAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- MeasurementAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
Never called.
- MeasurementAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
Internal - constructor used by generator
- MeasurementAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
- MeasurementAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
- MeasurementAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- MeasurementAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- MeasurementAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- MeasurementAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.MeasurementAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- MeasurementAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- MeasurementFSM - Class in org.apache.ctakes.core.fsm.machine
-
Uses one or more finite state machines to detect measurements in the given
input of tokens.
- MeasurementFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.MeasurementFSM
-
Constructor
- MeasurementToken - Class in org.apache.ctakes.core.fsm.output
-
- MeasurementToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.MeasurementToken
-
- MED_STATUS_CHANGE_DECREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_DECREASEFROM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_INCREASE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_INCREASEFROM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_MAX - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_NOCHANGE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_OTHER - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_START - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_STOP - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MED_STATUS_CHANGE_SUM - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- Medication - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
-
Never called.
- Medication(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
-
Internal - constructor used by generator
- Medication(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication
-
- Medication_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source.
- Medication_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationAllergyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
Never called.
- MedicationAllergyModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
Internal - constructor used by generator
- MedicationAllergyModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
- MedicationAllergyModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
- MedicationAllergyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Indication of whether the medication is mentioned in the context of Allergies.
- MedicationAllergyModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationDosage - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
Never called.
- MedicationDosage(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
Internal - constructor used by generator
- MedicationDosage(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
- MedicationDosage_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosage_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationDosageModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
Never called.
- MedicationDosageModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
Internal - constructor used by generator
- MedicationDosageModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
- MedicationDosageModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
- MedicationDosageModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Dosage indicates how much of a prescribed drug should be taken.
- MedicationDosageModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationDuration - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- MedicationDuration - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- MedicationDuration - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- MedicationDuration - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:50 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- MedicationDuration() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
Never called.
- MedicationDuration(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
Internal - constructor used by generator
- MedicationDuration(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
- MedicationDuration_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- MedicationDuration_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- MedicationDuration_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- MedicationDuration_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:50 EDT 2017
- MedicationDuration_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationDurationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- MedicationDurationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- MedicationDurationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- MedicationDurationModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- MedicationDurationModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
Never called.
- MedicationDurationModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
Internal - constructor used by generator
- MedicationDurationModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
- MedicationDurationModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
- MedicationDurationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- MedicationDurationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- MedicationDurationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- MedicationDurationModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- MedicationDurationModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationEventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
Never called.
- MedicationEventMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
Internal - constructor used by generator
- MedicationEventMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
- MedicationEventMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
- MedicationEventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.
- MedicationEventMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationForm - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
Never called.
- MedicationForm(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
Internal - constructor used by generator
- MedicationForm(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
- MedicationForm_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Form of this medication.
- MedicationForm_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationFormModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
Never called.
- MedicationFormModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
Internal - constructor used by generator
- MedicationFormModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
- MedicationFormModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
- MedicationFormModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Form of this medication.
- MedicationFormModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationFrequency - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
Never called.
- MedicationFrequency(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
Internal - constructor used by generator
- MedicationFrequency(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
- MedicationFrequency_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
How often a medication should be used.
- MedicationFrequency_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationFrequencyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
Never called.
- MedicationFrequencyModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
Internal - constructor used by generator
- MedicationFrequencyModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
- MedicationFrequencyModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
- MedicationFrequencyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
How often a medication should be used.
- MedicationFrequencyModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
Never called.
- MedicationMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
Internal - constructor used by generator
- MedicationMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
- MedicationMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
- MedicationMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Medication) Event.
- MedicationMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationRoute - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
Never called.
- MedicationRoute(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
Internal - constructor used by generator
- MedicationRoute(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
- MedicationRoute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Means by which the medication was taken or administered.
- MedicationRoute_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationRouteModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
Never called.
- MedicationRouteModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
Internal - constructor used by generator
- MedicationRouteModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
- MedicationRouteModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
- MedicationRouteModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Means by which the medication was taken or administered.
- MedicationRouteModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationStatusChange - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
Never called.
- MedicationStatusChange(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
Internal - constructor used by generator
- MedicationStatusChange(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
- MedicationStatusChange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChange_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationStatusChangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
Never called.
- MedicationStatusChangeModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
Internal - constructor used by generator
- MedicationStatusChangeModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
- MedicationStatusChangeModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
- MedicationStatusChangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Status refers to the whether the medication is currently being taken or not.
- MedicationStatusChangeModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationStrength - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength() - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
Never called.
- MedicationStrength(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
Internal - constructor used by generator
- MedicationStrength(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
- MedicationStrength_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrength_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
initialize variables to correspond with Cas Type and Features
- MedicationStrengthModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
Never called.
- MedicationStrengthModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
Internal - constructor used by generator
- MedicationStrengthModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
- MedicationStrengthModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
- MedicationStrengthModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Strength indicates the strength number and unit of the prescribed drug.
- MedicationStrengthModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type
-
initialize variables to correspond with Cas Type and Features
- MemConceptFactory - Class in org.apache.ctakes.dictionary.lookup2.concept
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/9/2014
- MemConceptFactory(String, Map<Long, Concept>) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.MemConceptFactory
-
- MemRareWordDictionary - Class in org.apache.ctakes.dictionary.lookup2.dictionary
-
A RareWordDictionary that uses a HashMap of Rare Words and Terms for lookup
Author: SPF
Affiliation: CHIP-NLP
Date: 1/9/14
- MemRareWordDictionary(String, CollectionMap<String, RareWordTerm, ? extends Collection<RareWordTerm>>) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.MemRareWordDictionary
- MentionClusterAgreementFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterAgreementFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAgreementFeaturesExtractor
-
- MentionClusterAttributeFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterAttributeFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAttributeFeaturesExtractor
-
- MentionClusterAttributeVectorExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterAttributeVectorExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterAttributeVectorExtractor
-
- MentionClusterCoreferenceAnnotator - Class in org.apache.ctakes.coreference.ae
-
- MentionClusterCoreferenceAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- MentionClusterCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair - Class in org.apache.ctakes.coreference.ae
-
- MentionClusterDepHeadExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterDepHeadExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDepHeadExtractor
-
- MentionClusterDistanceFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterDistanceFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistanceFeaturesExtractor
-
- MentionClusterDistSemExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterDistSemExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistSemExtractor
-
- MentionClusterDistSemExtractor(String) - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterDistSemExtractor
-
- MentionClusterMentionFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterMentionFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterMentionFeaturesExtractor
-
- MentionClusterMentionFeaturesExtractor(String) - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterMentionFeaturesExtractor
-
- MentionClusterRankingCoreferenceAnnotator - Class in org.apache.ctakes.coreference.ae
-
- MentionClusterRankingCoreferenceAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- MentionClusterRankingCoreferenceAnnotator.CollectionTextRelationIdentifiedAnnotationPair - Class in org.apache.ctakes.coreference.ae
-
- MentionClusterSalienceFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterSalienceFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSalienceFeaturesExtractor
-
- MentionClusterSectionFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterSectionFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSectionFeaturesExtractor
-
- MentionClusterSemTypeDepPrefsFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterSemTypeDepPrefsFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterSemTypeDepPrefsFeatureExtractor
-
- MentionClusterStackFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterStackFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterStackFeaturesExtractor
-
- MentionClusterStringFeaturesExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterStringFeaturesExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterStringFeaturesExtractor
-
- MentionClusterUMLSFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.cluster
-
- MentionClusterUMLSFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterUMLSFeatureExtractor
-
- merge(List<ImputedFeatureEvaluatorImpl.JointDistribution>, Map<String, Set<Long>>, String) - Static method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
merge joint distributions into a single distribution.
- MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas - Class in org.apache.ctakes.assertion.eval
-
Read in gold annotations from XMI and create a view within the current CAS, and copy the
gold annotations into the new view within the current CAS.
- MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas() - Constructor for class org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
-
- Metadata - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata() - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
-
Never called.
- Metadata(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
-
Internal - constructor used by generator
- Metadata(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata
-
- Metadata_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Structured data that captures information about the document, patient, or context of the clinical text.
- Metadata_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
initialize variables to correspond with Cas Type and Features
- MetaDataHit - Interface in org.apache.ctakes.dictionary.lookup
-
- MetaDataHitComparator - Class in org.apache.ctakes.dictionary.lookup
-
Allows two MetaDataHit objects to be compared based on a specific metadata
value that they both contain.
- MetaDataHitComparator(String, int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.MetaDataHitComparator
-
Constructor
- MetaDataHitConst - Interface in org.apache.ctakes.dictionary.lookup
-
- MetaDataPostLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
-
- MetaDataPostLookupFilterImpl(DictionaryEngine, String[], boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.MetaDataPostLookupFilterImpl
-
- metaLookup(String) - Method in class org.apache.ctakes.dictionary.lookup.DictionaryEngine
-
Gets a collection of MetaDataHits from the Dictionary based on the input
text.
- MetaMapToCTakesAnnotator - Class in org.apache.ctakes.ytex.uima.annotators
-
Convert metamap concepts to ctakes named entities.
- MetaMapToCTakesAnnotator() - Constructor for class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator
-
- MetaMapToCTakesAnnotator.NegSpan - Class in org.apache.ctakes.ytex.uima.annotators
-
- MetastasisAnaforaXMLReader - Class in org.apache.ctakes.relationextractor.metastasis
-
- MetastasisAnaforaXMLReader() - Constructor for class org.apache.ctakes.relationextractor.metastasis.MetastasisAnaforaXMLReader
-
- MetastasisXmiGenerationPipeline - Class in org.apache.ctakes.relationextractor.metastasis
-
- MetastasisXmiGenerationPipeline() - Constructor for class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- MetastasisXmiGenerationPipeline.UriToDocumentTextAnnotatorCtakes - Class in org.apache.ctakes.relationextractor.metastasis
-
- MetastasisXmiGenerationPipeline.XMIWriter - Class in org.apache.ctakes.relationextractor.metastasis
-
- MetaTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- MetaTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- MethodCachingInterceptor - Class in org.apache.ctakes.ytex.kernel.evaluator
-
simple caching interceptor.
- MethodCachingInterceptor() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- MIDDLE_SCOPE - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
Provides context annotations that are "inside" the focus annotation.
- MinContext - Class in org.apache.ctakes.core.cleartk
-
- MinContext(CleartkExtractor.Context...) - Constructor for class org.apache.ctakes.core.cleartk.MinContext
-
Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts
into a bag of features where all features have the same name.
- MINMAX_EXTRACTOR_KEY - Static variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- minorityInsts - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- mipacDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- MiPACQ_CORPUS - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- MIPACQ_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- MIPACQ_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- MIPACQ_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTests
-
- MIPACQ_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTests
-
- MIPACQ_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- MIPACQ_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- mipacqAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- MiPACQKnowtatorXMLReader - Class in org.apache.ctakes.assertion.cr
-
assumes knowtator xml files are in "exported-xml" subdirectory w/ train/dev/test subsubdirs
and the original plaintext files are in "text" subdirectory w/ train/dev/test subsubdirs
- MiPACQKnowtatorXMLReader() - Constructor for class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
- MipacqMarkableCreator - Class in org.apache.ctakes.coreference.ae
-
- MipacqMarkableCreator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- MipacqMarkableExpander - Class in org.apache.ctakes.coreference.ae
-
- MipacqMarkableExpander() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkableExpander
-
- MipacqMarkablePairGenerator - Class in org.apache.ctakes.coreference.ae
-
- MipacqMarkablePairGenerator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
-
- MipacqSvmChainCreator - Class in org.apache.ctakes.coreference.ae
-
- MipacqSvmChainCreator() - Constructor for class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- mipacqTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- mipacqTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- modelDir - Variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- modelDirectory - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- modelFile - Variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors.Options
-
- modelOutputDirectory - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- modelsDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- Modifier - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
-
Never called.
- Modifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
-
Internal - constructor used by generator
- Modifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
-
- Modifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier
-
- Modifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to an Attribute.
- Modifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
initialize variables to correspond with Cas Type and Features
- MODIFIER_TYPE_ID_COURSE_CLASS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MODIFIER_TYPE_ID_LAB_INTERPRETATION_INDICATOR - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MODIFIER_TYPE_ID_SEVERITY_CLASS - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- MODIFIER_TYPE_ID_UNKNOWN - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- ModifierExtractorAnnotator - Class in org.apache.ctakes.relationextractor.ae
-
- ModifierExtractorAnnotator() - Constructor for class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
-
- ModifierExtractorEvaluation - Class in org.apache.ctakes.relationextractor.eval
-
- ModifierExtractorEvaluation(File, ParameterSettings) - Constructor for class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
-
- ModifierExtractorEvaluation.OnlyGoldModifiers - Class in org.apache.ctakes.relationextractor.eval
-
Class that copies the manual
Modifier annotations to the default
CAS.
- modify(String) - Method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl
-
- modify(String) - Method in interface org.apache.ctakes.core.ci.TextModifier
-
Generates modifications for the specified text.
- MONTHLY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- MorphosyntacticFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.salience
-
- MorphosyntacticFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.salience.MorphosyntacticFeatureExtractor
-
- mouseClicked(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- mouseDragged(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
-
- mouseEntered(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- mouseExited(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- mouseMoved(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- mousePressed(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- mouseReleased(MouseEvent) - Method in class org.apache.ctakes.gui.component.DisablerPane
- moveTimexDownToNP(SimpleTree) - Static method in class org.apache.ctakes.temporal.ae.feature.TemporalPETFlatExtractor
-
- moveTimexDownToNP(SimpleTree) - Static method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPETExtractor
-
- moveUserBitDown(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
-
- moveUserBitUp(int) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
-
- MRCONSO - Class in org.apache.ctakes.ytex.umls.model
-
- MRCONSO() - Constructor for class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- MrconsoIndex - Enum in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/23/14
- MrconsoParser - Class in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/17/14
- MRREL - Class in org.apache.ctakes.ytex.umls.model
-
mapped to umls MRREL table
- MRREL() - Constructor for class org.apache.ctakes.ytex.umls.model.MRREL
-
- MRSTY - Class in org.apache.ctakes.ytex.umls.model
-
- MRSTY() - Constructor for class org.apache.ctakes.ytex.umls.model.MRSTY
-
- MrstyIndex - Enum in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 3/26/14
- MrstyParser - Class in org.apache.ctakes.gui.dictionary.umls
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/17/14
- ms1 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- ms2 - Variable in class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- MultiTextSpan - Class in org.apache.ctakes.dictionary.lookup2.textspan
-
A useful key for hash collections based upon start and end indices and missing internal spans.
- MultiTextSpan(int, int, Collection<TextSpan>) - Constructor for class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
-
Given span indices should be ordered start < end, but it is not an absolute requirement.
- MultiTokenFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
for every UMLS entities covering the annotation, extracted related token features
- MultiTokenFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.MultiTokenFeaturesExtractor
-
- mutualInformation(String, OUTCOME_T) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- mutualInformation(String, OUTCOME_T) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- MutualInformationFeatureSelection<OUTCOME_T> - Class in org.apache.ctakes.assertion.attributes.features.selection
-
Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
- MutualInformationFeatureSelection(String) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection(String, int) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection(String, MutualInformationFeatureSelection.CombineScoreMethod, double, int) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection<OUTCOME_T> - Class in org.apache.ctakes.temporal.ae.feature.selection
-
Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
- MutualInformationFeatureSelection(String) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection(String, int) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection(String, MutualInformationFeatureSelection.CombineScoreMethod, double, int) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- MutualInformationFeatureSelection.CombineScoreMethod - Enum in org.apache.ctakes.assertion.attributes.features.selection
-
Specifies how scores for each outcome should be combined/aggregated into a single score
- MutualInformationFeatureSelection.CombineScoreMethod - Enum in org.apache.ctakes.temporal.ae.feature.selection
-
Specifies how scores for each outcome should be combined/aggregated into a single score
- MutualInformationFeatureSelection.MutualInformationStats<OUTCOME_T> - Class in org.apache.ctakes.assertion.attributes.features.selection
-
Helper class for aggregating and computing mutual information statistics
- MutualInformationFeatureSelection.MutualInformationStats<OUTCOME_T> - Class in org.apache.ctakes.temporal.ae.feature.selection
-
Helper class for aggregating and computing mutual information statistics
- MutualInformationStats(double) - Constructor for class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- MutualInformationStats(double) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- packageClassifier(File, JarOutputStream) - Method in class org.apache.ctakes.temporal.keras.KerasStringOutcomeClassifierBuilder
-
- pagerankIter(double[], Map<Integer, Double>, ConceptGraph, double, double, Set<Integer>) - Method in class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
- pagerankIter(double[], Map<Integer, Double>, ConceptGraph, double, double) - Method in class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
- pagerankIter(Map<Integer, Double>, Map<Integer, Double>, ConceptGraph, double, double) - Method in class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
perform one iteration of pagerank
- PageRankMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
- PageRankMetric(ConceptSimilarityService, PageRankService) - Constructor for class org.apache.ctakes.ytex.kernel.metric.PageRankMetric
-
- PageRankService - Interface in org.apache.ctakes.ytex.kernel.pagerank
-
- PageRankServiceImpl - Class in org.apache.ctakes.ytex.kernel.pagerank
-
- PageRankServiceImpl() - Constructor for class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
- paint(Graphics) - Method in class org.apache.ctakes.gui.component.PositionedSplitPane
-
If this is the first paint, set the divider location first.
- paintBorder(Graphics) - Method in class org.apache.ctakes.gui.component.SmoothToolTip
-
- paintComponent(Graphics) - Method in class org.apache.ctakes.gui.component.DisablerPane
-
Paint partially transparent grey over the frame
- paintComponent(Graphics) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Draw the line numbers
- paintObject(Component, Object, boolean) - Method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
- paintPipeBitInfo(Component, PipeBitInfo, boolean) - Method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
- Pair<T> - Class in org.apache.ctakes.core.util
-
Why oh why is there not a simple immutable class representing a pair of values in the jdk ?
- Pair(T, T) - Constructor for class org.apache.ctakes.core.util.Pair
-
- Pair - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- Pair() - Constructor for class org.apache.ctakes.coreference.type.Pair
-
Never called.
- Pair(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.Pair
-
Internal - constructor used by generator
- Pair(JCas) - Constructor for class org.apache.ctakes.coreference.type.Pair
-
- Pair - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair() - Constructor for class org.apache.ctakes.typesystem.type.util.Pair
-
Never called.
- Pair(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair
-
Internal - constructor used by generator
- Pair(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair
-
- Pair<T> - Class in org.apache.ctakes.ytex.kernel
-
simple object pair implementation
- Pair(T, T) - Constructor for class org.apache.ctakes.ytex.kernel.Pair
-
- Pair_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- Pair_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.Pair_Type
-
initialize variables to correspond with Cas Type and Features
- Pair_Type - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair_Type - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair_Type - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair_Type - Class in org.apache.ctakes.typesystem.type.util
-
An Attribute-Value tuple.
- Pair_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pair_Type
-
initialize variables to correspond with Cas Type and Features
- PairAttributeCalculator - Class in org.apache.ctakes.coreference.util
-
- PairAttributeCalculator(JCas, Markable, Markable) - Constructor for class org.apache.ctakes.coreference.util.PairAttributeCalculator
-
- Pairs - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs() - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs
-
Never called.
- Pairs(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs
-
Internal - constructor used by generator
- Pairs(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs
-
- Pairs_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force "hash" that stores multiple Pairs in a list.
- Pairs_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
initialize variables to correspond with Cas Type and Features
- PairType - Enum in org.apache.ctakes.coreference.eval.helpers
-
- pairwiseParams - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- pAlgo - Static variable in class org.apache.ctakes.ytex.kernel.SvmlinEvaluationParser
-
- Paragraph - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
Never called.
- Paragraph(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
Internal - constructor used by generator
- Paragraph(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
- Paragraph(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
- PARAGRAPH_PATTERN - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
vng change split paragraphs on this pattern
- Paragraph_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A text span corresponding to a paragraph, typically containing multiple sentences.
- Paragraph_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Paragraph_Type
-
initialize variables to correspond with Cas Type and Features
- PARAGRAPH_TYPES_DESC - Static variable in class org.apache.ctakes.core.ae.ParagraphAnnotator
-
- PARAGRAPH_TYPES_PATH - Static variable in class org.apache.ctakes.core.ae.ParagraphAnnotator
-
- ParagraphAnnotator - Class in org.apache.ctakes.core.ae
-
- ParagraphAnnotator() - Constructor for class org.apache.ctakes.core.ae.ParagraphAnnotator
-
- ParagraphAnnotator() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.ParagraphAnnotator
-
- ParagraphSentenceFixer - Class in org.apache.ctakes.core.ae
-
- ParagraphSentenceFixer() - Constructor for class org.apache.ctakes.core.ae.ParagraphSentenceFixer
-
- ParagraphVectorAnnotator() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.ParagraphVectorAnnotator
-
- PARAM_ALLOWED_CLASSES - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Name of configuration parameter that determines the allowed
Classification values.
- PARAM_ANAFORA_DIRECTORY - Static variable in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- PARAM_ANAFORA_DIRECTORY - Static variable in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- PARAM_ANAFORA_XML_SUFFIXES - Static variable in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- PARAM_ANAFORA_XML_SUFFIXES - Static variable in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- PARAM_ANNOTATION_CLASSES - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
-
- PARAM_ANNOTATION_CLASSES - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromSystem
-
- PARAM_ANNOTATION_TYPE - Static variable in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
Specifies the parameter AnnotationType to iterate on, specified in the descriptor file.
- PARAM_CHUNK_PATTERN - Static variable in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
The pattern of chunks that trigger an adjustment.
- PARAM_CHUNKER_CREATOR_CLASS - Static variable in class org.apache.ctakes.chunker.ae.Chunker
-
- PARAM_CHUNKER_MODEL_FILE - Static variable in class org.apache.ctakes.chunker.ae.Chunker
-
- PARAM_CLASSIFY_BOTH_DIRECTIONS - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- PARAM_CMD_CACHE_FILE - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_COGVED - Static variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- PARAM_COMMENT - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- PARAM_COMMENT_STRING - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
Optional parameter specifies a comment string.
- PARAM_COREF_MODEL - Static variable in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- PARAM_DB_CONN_RESRC - Static variable in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
- PARAM_DB_CONN_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
Name of external resource for database connection.
- PARAM_DELIMITER - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- PARAM_DELIMITER - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- PARAM_DELIMITER - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
The name of the parameter that is specifies the delimiter for the output
file.
- PARAM_DEST_CLASS - Static variable in class org.apache.ctakes.core.ae.CopyAnnotator
-
- PARAM_DOCID_COLS - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
Optional parameter.
- PARAM_DOCID_DELIMITER - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
Optional parameter.
- PARAM_DOCTEXT_COL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
Name of column from resultset that contains the document text.
- PARAM_DRIVER_CLASS - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
JDBC driver ClassName.
- PARAM_DRIVER_CLASS - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
JDBC driver ClassName.
- PARAM_DROP_ELEMENTS - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyCoreferenceRelations
-
- PARAM_DTD_FILE - Static variable in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Name of configuration parameter that contains the character encoding used
by the input files.
- PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
Name of configuration parameter that contains the character encoding used
by the input files.
- PARAM_ENCODING - Static variable in class org.apache.ctakes.core.cr.FileTreeReader
-
Name of configuration parameter that contains the character encoding used
by the input files.
- PARAM_EXC_TAGS_KEY - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
optional part of speech tags for tokens that should not be used for lookup
- PARAM_EXCLUSION_WORDS - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_EXTEND_TO_INCLUDE_TOKEN - Static variable in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
The index of the token (within the pattern) to extend the end offset to
include.
- PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Name of optional configuration parameter that specifies the extensions
of the files that the collection reader will read.
- PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
Name of optional configuration parameter that specifies the extensions
of the files that the collection reader will read.
- PARAM_EXTENSIONS - Static variable in class org.apache.ctakes.core.cr.FileTreeReader
-
Name of optional configuration parameter that specifies the extensions
of the files that the collection reader will read.
- PARAM_FAILUNKNOWN - Static variable in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
Name of the configuration parameter that must be set to indicate if the
execution fails if an encountered type is unknown
- PARAM_FAILUNKNOWN - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
Name of the configuration parameter that must be set to indicate if the
execution fails if an encountered type is unknown
- PARAM_FEAT_CONFIG - Static variable in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- PARAM_FEATURE_CONFIG - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_FEATURE_SELECTION_THRESHOLD - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_FEATURE_SELECTION_THRESHOLD - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- PARAM_FEATURE_SELECTION_THRESHOLD - Static variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- PARAM_FEATURE_SELECTION_URI - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_FEATURE_SELECTION_URI - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- PARAM_FEATURE_SELECTION_URI - Static variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- PARAM_FIELD_NAME - Static variable in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- PARAM_FIELD_SEPERATOR - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- PARAM_FILES - Static variable in class org.apache.ctakes.assertion.eval.XMIReader
-
- PARAM_FILES - Static variable in class org.apache.ctakes.core.cr.TextReader
-
- PARAM_FILES - Static variable in class org.apache.ctakes.core.cr.XMIReader
-
- PARAM_FILES - Static variable in class org.apache.ctakes.dependency.parser.ae.util.XMIReader
-
- PARAM_FILES - Static variable in class org.apache.ctakes.relationextractor.eval.XMIReader
-
- PARAM_FNMATCH - Static variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- PARAM_FRAGS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_FRAGS_FILENAME - Static variable in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- PARAM_GOLD_DIR - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyCoreferenceRelations
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.CreatePseudoGoldMarkables
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.SetGoldConfidence
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveNonUMLSEtEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveNonUMLSEtEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveNonUMLSEtEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveNonUMLSEvents
-
- PARAM_GOLD_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveNonUMLSEtEvents
-
- PARAM_GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_GOLD_VIEW_NAME - Static variable in class org.apache.ctakes.coreference.ae.CoreferenceChainScoringOutput
-
- PARAM_GOLDVIEW_NAME - Static variable in class org.apache.ctakes.temporal.eval.RemoveTreeAlignedMentions
-
- PARAM_HYPHEN_FILE - Static variable in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- PARAM_ID_DELIMETER - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
Name of optional configuration parameter that specifies a character (or string) that delimits
the id of the document from the text of the document.
- PARAM_IGNORE_BLANK_LINES - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
Optional parameter determines whether a blank line will be processed as a document or
will be ignored.
- PARAM_IGNORE_SECTIONS - Static variable in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
-
- PARAM_IGNORE_SECTIONS - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Sections NOT to be entered in ClassifiableEntries
- PARAM_IGNORE_WORDS - Static variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
The list of words ("and" "&") to ignore in pattern matching.
- PARAM_INDEX_DIR - Static variable in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- PARAM_INPUT_DIR - Static variable in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- PARAM_INPUT_FILE - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AlternateCuePhraseAnnotator
-
- PARAM_INPUT_FILE_NAME - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
This parameter will be used the descriptor file to specify the location of the
file that will be run through this collection reader.
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.I2B2Challenge2010CollectionReader
-
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
Name of configuration parameter that must be set to the path of a directory containing the XMI
files.
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
Name of configuration parameter that can be set to the path of
a directory containing input files.
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Name of configuration parameter that must be set to the path of
a directory containing input files.
- PARAM_INPUTDIR - Static variable in class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
Name of configuration parameter that must be set to the path of a directory containing the XMI
files.
- PARAM_IS_START - Static variable in class org.apache.ctakes.core.ae.StartFinishLogger
-
- PARAM_ISOLATION - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
Transaction isolation level.
- PARAM_ISOLATION - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
Transaction isolation level.
- PARAM_KEEP_ALIVE - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
Flag that determines whether to keep JDBC connection open no matter what.
- PARAM_KEEP_ALIVE - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
Flag that determines whether to keep JDBC connection open no matter what.
- PARAM_KNOWTATOR_XML_DIRECTORY - Static variable in class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Name of optional configuration parameter that contains the language of
the documents in the input directory.
- PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
Name of optional configuration parameter that contains the language of
the documents in the input directory.
- PARAM_LANGUAGE - Static variable in class org.apache.ctakes.core.cr.LinesFromFileCollectionReader
-
Name of optional configuration parameter that contains the language of
the documents in the input directory.
- PARAM_LEMMA_CACHE_FILE_LOCATION - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Value is "LemmaCacheFileLocation".
- PARAM_LEMMA_CACHE_FILE_LOCATION - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Value is "LemmaCacheFileLocation".
- PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Value is "LemmaCacheFrequencyCutoff".
- PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Value is "LemmaCacheFrequencyCutoff".
- PARAM_LEMMA_FREQ_CUTOFF - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- PARAM_LEMMATIZER_DATA_FILE - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- PARAM_LOGGER_NAME - Static variable in class org.apache.ctakes.core.ae.StartFinishLogger
-
- PARAM_LOOKUP_XML - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
Name of configuration parameter that can be set to the path of
a file containing dictionary lookup configuration.
- PARAM_LVGCMDAPI_RESRC_KEY - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_MAP_THYME - Static variable in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- PARAM_MAX_WORDS - Static variable in class org.apache.ctakes.core.cr.LuceneCollectionReader
-
- PARAM_METHOD_MAP - Static variable in class org.apache.ctakes.core.ae.CopyAnnotator
-
- PARAM_MIN_SPAN_KEY - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
optional minimum span for tokens that should not be used for lookup
- PARAM_MODAL_ADJ - Static variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- PARAM_MODEL_FILENAME - Static variable in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- PARAM_NAME_DECODING_INPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- PARAM_NAME_DECODING_OUTPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- PARAM_NAME_MODEL_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- PARAM_NAME_TRAINING_INPUT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- PARAM_NUMREADS - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
Arguement to equate to # of times it should read the files.
- PARAM_OTHER_VERB - Static variable in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- PARAM_OUTFILE - Static variable in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- PARAM_OUTPUT_DIR - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_OUTPUT_DIR - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteAnaforaXML
-
- PARAM_OUTPUT_DIR - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteI2B2XML
-
- PARAM_OUTPUT_DIRECTORY - Static variable in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI
-
- PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
The parameter name for the configuration parameter that specifies the output directory
- PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- PARAM_OUTPUT_FILE - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
The name of the parameter that is specifies the path of the output file.
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
-
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
-
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
-
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
Name of configuration parameter that must be set to the path of a directory into which the
output files will be written.
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
Name of configuration parameter that can be set to the path of
a directory containing output files.
- PARAM_OUTPUTDIR - Static variable in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- PARAM_PAR_SIM - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- PARAM_PARSE_SECTIONS - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Name of configuration parameter that determines whether section headers
will be parsed out and Segments made to cover the section text.
- PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- PARAM_PARSER_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- PARAM_PARSERMODEL - Static variable in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
-
- PARAM_PASSWORD - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
Password for db authentication.
- PARAM_PASSWORD - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
Password for db authentication.
- PARAM_PIPER - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
Name of configuration parameter that can be set to the path of
a Piper file.
- PARAM_PORTION_OF_DATA_TO_USE - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_POS_MODEL_FILE - Static variable in class org.apache.ctakes.postagger.POSTagger
-
- PARAM_POS_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- PARAM_POST_LEMMAS - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Value is "PostLemmas".
- PARAM_POST_LEMMAS - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Value is "PostLemmas".
- PARAM_PRED_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- PARAM_PREFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer
-
The parameter name for the configuration parameter that specifies a fixed prefix for all
returned file names.
- PARAM_PRINT_ANN - Static variable in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- PARAM_PRINT_ERRORS - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_PROB_VIEW - Static variable in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- PARAM_PROB_VIEW - Static variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- PARAM_PROB_VIEW - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteAnaforaXML
-
- PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE - Static variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- PARAM_PROBABILITY_OF_KEEPING_DEFAULT_EXAMPLE - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- PARAM_PSEUDO_GOLD_VIEW - Static variable in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.CreatePseudoGoldMarkables
-
- PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads
-
- PARAM_RECURSE - Static variable in class org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveEventEventRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveEventEventRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveEventEventRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveEventEventRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.AddEEPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddPotentialRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.Overlap2Contains
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveCrossSentenceRelations
-
- PARAM_RELATION_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveEventEventRelations
-
- PARAM_ROLE_MODEL_FILE_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- PARAM_SAVE_ANN - Static variable in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- PARAM_SCORE_ALL - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- PARAM_SCRIPT_DIR - Static variable in class org.apache.ctakes.temporal.keras.ScriptStringFeatureDataWriter
-
- PARAM_SCRIPT_DIR - Static variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeDataWriter
-
- PARAM_SD_MODEL_FILE - Static variable in class org.apache.ctakes.core.ae.SentenceDetector
-
- PARAM_SECTION_REGEX_FILE_URI - Static variable in class org.mitre.medfacts.uima.ZoneAnnotator
-
- PARAM_SECTIONS_FILE - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- PARAM_SEGMENT_ID - Static variable in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
-
- PARAM_SEGMENTS_MEDICATION_RELATED - Static variable in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
This identifies the section ids that will be considered in generating DrugMentionAnnotaitons
- PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.SentenceDetector
-
Value is "SegmentsToSkip".
- PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
Value is "SegmentsToSkip".
- PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
Value is "SegmentsToSkip".
- PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator
-
Value is "sectionOverrideSet".
- PARAM_SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
Value is "SegmentsToSkip".
- PARAM_SEMDIR - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- PARAM_SENT_DIST - Static variable in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveCrossSentenceRelations
-
- PARAM_SENTENCE_VIEW - Static variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveCrossSentenceRelations
-
- PARAM_SET_DEFAULTS - Static variable in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
- PARAM_SET_DEFAULTS - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
- PARAM_SKIP_SEGMENTS - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_SMOKING_STATUS_DESC_STEP1KEY - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Name of configuration parameter that must be set to the filepath of the
UIMA descriptor ProductionPostSentenceAggregate.xml
- PARAM_SMOKING_STATUS_DESC_STEP2KEY - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- PARAM_SMOTE_NUM_NEIGHBORS - Static variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- PARAM_SMOTE_NUM_NEIGHBORS - Static variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- PARAM_SOURCE_CLASS - Static variable in class org.apache.ctakes.core.ae.CopyAnnotator
-
- PARAM_SQL - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
SQL statement to retrieve the document.
- PARAM_STOPS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_STOPWORDS_FILE - Static variable in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
-
- PARAM_STOPWORDS_FILENAME - Static variable in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- PARAM_SUBDIR - Static variable in class org.apache.ctakes.core.config.ConfigParameterConstants
-
Name of configuration parameter that can be set to the path of
a subdirectory for input or output files.
- PARAM_SUFFIX - Static variable in class org.apache.ctakes.core.util.CtakesFileNamer
-
The parameter name for the configuration parameter that specifies a fixed suffix for all
returned file names.
- PARAM_TAG_DIVIDERS - Static variable in class org.apache.ctakes.core.ae.RegexSectionizer
-
- PARAM_TEXT_DIRECTORY - Static variable in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
- PARAM_TEXT_DIRECTORY - Static variable in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
- PARAM_TIMEX_VIEW - Static variable in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- PARAM_TIMEX_VIEW - Static variable in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- PARAM_TIMEX_VIEW - Static variable in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- PARAM_TIMEX_VIEW - Static variable in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- PARAM_TIMEX_VIEW - Static variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- PARAM_TOKEN_FILE - Static variable in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- PARAM_TREES - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_TRUTH_FILE - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Name of configuration parameter that must be set to the filepath of the
delimited truth file.
- PARAM_TRUTH_FILE_DELIMITER - Static variable in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
Name of configuration parameter that describes the character delimiter
used in the delimited truth file.
- PARAM_URL - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
JDBC URL that specifies db network location and db name.
- PARAM_URL - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
JDBC URL that specifies db network location and db name.
- PARAM_USE_CMD_CACHE - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_USE_EXISTING_ENCODERS - Static variable in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- PARAM_USE_LEMMA_CACHE - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Value is "UseLemmaCache".
- PARAM_USE_LEMMA_CACHE - Static variable in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Value is "UseLemmaCache".
- PARAM_USE_LEMMATIZER - Static variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- PARAM_USE_SEGMENTS - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- PARAM_USERNAME - Static variable in class org.apache.ctakes.core.resource.JdbcConnectionResourceImpl
-
Username for db authentication.
- PARAM_USERNAME - Static variable in class org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
-
Username for db authentication.
- PARAM_VALUE_FILE_RESRC - Static variable in class org.apache.ctakes.core.cr.JdbcCollectionReader
-
Optional parameter.
- PARAM_VECTOR_TABLE - Static variable in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
- PARAM_VECTORS - Static variable in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- PARAM_WINDOW_ANNOT_KEY - Static variable in interface org.apache.ctakes.dictionary.lookup2.ae.JCasTermAnnotator
-
specifies the type of window to use for lookup
- PARAM_WORD_FREQ_FILE - Static variable in class org.apache.ctakes.core.cc.TokenFreqCasConsumer
-
The name of the parameter that is specifies the path of the output file in the
descriptor file.
- PARAM_WORDS_IN_PATTERN - Static variable in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
The list of words ("none", "no", etc) used in the pattern
- PARAM_XMI_DIRECTORY - Static variable in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.XMIWriter
-
- PARAM_XMI_DIRECTORY - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader
-
- PARAM_XMI_DIRECTORY - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter
-
- PARAM_XML_SCHEME_NAME - Static variable in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
The parameter name for the configuration parameter that provides the name of the XML scheme
to use.
- PARAM_XT_MAP - Static variable in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
- ParameterCellRenderer - Class in org.apache.ctakes.gui.pipeline.bit.parameter
-
- ParameterCellRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterCellRenderer
-
- ParameterHolder - Interface in org.apache.ctakes.gui.pipeline.bit.parameter
-
- ParameterInfoPanel - Class in org.apache.ctakes.gui.pipeline.bit.parameter
-
- ParameterInfoPanel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- ParameterMapper - Class in org.apache.ctakes.gui.pipeline.bit.parameter
-
- Parameters() - Constructor for class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- Parameters(Properties) - Constructor for class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.Parameters
-
- ParameterSettings - Class in org.apache.ctakes.relationextractor.eval
-
Holds a set of parameters for a relation extraction model
- ParameterSettings(Class<? extends DataWriter<String>>, Object[], String[]) - Constructor for class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- ParameterSettings(Class<? extends DataWriter<String>>, String[]) - Constructor for class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- ParameterSettings(boolean, float, String, double, double, String, CompositeKernel.ComboOperator, double, double) - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- ParameterTableModel - Class in org.apache.ctakes.gui.pipeline.bit.parameter
-
- ParameterTableModel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
-
- params - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- params - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- ParamUtil - Class in org.apache.ctakes.core.util
-
- ParamUtil() - Constructor for class org.apache.ctakes.core.util.ParamUtil
-
- parent - Variable in class org.apache.ctakes.utils.tree.SimpleTree
-
- ParentPtrTree - Class in org.apache.ctakes.coreference.util
-
- ParentPtrTree(int) - Constructor for class org.apache.ctakes.coreference.util.ParentPtrTree
-
- ParentPtrTree(int[][]) - Constructor for class org.apache.ctakes.coreference.util.ParentPtrTree
-
- parse(URI) - Method in class org.apache.ctakes.core.knowtator.KnowtatorXMLParser
-
- parse(JCas, String) - Static method in class org.apache.ctakes.core.util.DateParser
-
First try parsing full date (month, day and year) using java.util.Date
If that fails, try extracting at least part of the date
- parse() - Method in class org.apache.ctakes.jdl.data.xml.SaxParser
-
SAX Parser.
- parse(String) - Method in class org.apache.ctakes.jdl.data.xml.SaxParser
-
- parseAllConcepts(String, Map<Long, Concept>, Collection<String>, Collection<String>, UmlsTermUtil, Collection<String>, boolean, int, int, int, int) - Static method in class org.apache.ctakes.gui.dictionary.umls.MrconsoParser
-
- parseClassIds(BufferedReader) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
parse class ids from first line in prediction file.
- parseDescriptor(File, UimaContext, int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
-
- parseDescriptor(File, UimaContext) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
-
- parseDescriptor(File, UimaContext, int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilitiesRefactor
-
- parseDescriptor(File, UimaContext) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilitiesRefactor
-
- parseDescriptor(InputStream, UimaContext) - Static method in class org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser
-
Initiates the parsing of the XML descriptor file containing definition of dictionaries and a consumer for the
Rare Word Term dictionary paradigm
- parseDirectory(File, File) - Method in interface org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser
-
- parseDirectory(File, File) - Method in class org.apache.ctakes.ytex.kernel.SvmlinEvaluationParser
-
parse directory.
- parseDirectory(File, File) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
parse directory.
- parseDirectory(File, File) - Method in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- parseDirText(String) - Static method in class org.apache.ctakes.gui.dictionary.util.FileUtil
-
- parseDoubleOption(Pattern, String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
parse a number out of the libsvm command line that matches the specified
pattern.
- parseDoubleValue(Object) - Method in class org.apache.ctakes.drugner.DrugMention
-
- parseExtractor - Variable in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- parseExtractor - Variable in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- parseExtractor - Variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- ParseFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ParseFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.ParseFeatureExtractor
-
- parseFoldFromFileName(String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
extract fold from file name produced by file util
- parseInstanceIds(String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- parseInt(String, Logger) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
- parseInt(Object, String, int) - Static method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
- parseInt(String, Logger) - Static method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- parseIntOption(Pattern, String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
parse a number out of the libsvm command line that matches the specified
pattern.
- parseIntValue(Object) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- parseIntValue(Object) - Method in class org.apache.ctakes.drugner.DrugMention
-
- parseLabelFromFileName(String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
extract label from file name produced by file util
- parseModel(String) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
parse svm-train model file to get the number of support vectors.
- parseOptions(SVMClassifierEvaluation, String) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- parsePipelineLine(String) - Method in class org.apache.ctakes.core.pipeline.PiperFileReader
-
- parsePredictions(String, String, Properties, String, SVMClassifierEvaluation) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
parse predicted class ids, probabilities; correlate to target class ids
and instance ids.
- parsePredictions(String, String, Properties, String, SVMClassifierEvaluation) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightParser
-
Parse svm-classify input (instance file) and predictions (prediction
file).
- parser - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- parseResults(File, File, String, String, SVMClassifierEvaluation, Properties) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
parse the results in the specified output dir.
- parseResults(File, File, String, String, SVMClassifierEvaluation, Properties) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightParser
-
parse output.txt - contains vcdim and number support vectors
- ParserEvaluationAnnotator - Class in org.apache.ctakes.constituency.parser.ae
-
- ParserEvaluationAnnotator() - Constructor for class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
-
- parserModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- ParserTreeWriterConsumer - Class in org.apache.ctakes.constituency.parser.uima.co
-
- ParserTreeWriterConsumer() - Constructor for class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
-
- parseRunFromFileName(String) - Static method in class org.apache.ctakes.ytex.kernel.FileUtil
-
extract run from file name produced by file util
- ParserWrapper - Interface in org.apache.ctakes.constituency.parser
-
- ParseSpanFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- ParseSpanFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.ParseSpanFeatureExtractor
-
- parseStengthValue(Object) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- parseTextDoublesMap(File, Charset) - Static method in class org.apache.ctakes.temporal.ae.feature.CoveredTextToValuesExtractor
-
- parseTextDoublesMap(File, Charset) - Static method in class org.apache.ctakes.temporal.ae.feature.IdentifiedAnnotationFeatureExtractor
-
- parseYN(String) - Static method in class org.apache.ctakes.ytex.uima.model.BooleanUtil
-
- parsingCLI(String[]) - Static method in class org.apache.ctakes.jdl.AppMain
-
- PartOfSpeechFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- PartOfSpeechFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor
-
- PartOfSpeechTagger - Class in org.apache.ctakes.assertion.stub
-
- PartOfSpeechTagger(String) - Constructor for class org.apache.ctakes.assertion.stub.PartOfSpeechTagger
-
- PASS_PARAM - Static variable in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
- password - Variable in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
- pat - Variable in class org.apache.ctakes.sideeffect.util.PatternMatch
-
- PATCH - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- PathMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
- PathMetric(ConceptSimilarityService) - Constructor for class org.apache.ctakes.ytex.kernel.metric.PathMetric
-
- pathToString(LinkedList<ConllDependencyNode>) - Static method in class org.apache.ctakes.relationextractor.ae.features.DependencyParseUtils
-
This will convert a path into a string lexicalized at the end points with arc labels and POS tags in between
- pathToString(LinkedList<ConllDependencyNode>) - Static method in class org.apache.ctakes.temporal.ae.feature.DependencyParseUtils
-
This will convert a path into a string lexicalized at the end points with arc labels and POS tags in between
- PATIENT_LEVEL_PROCESSING - Static variable in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
Specifies whether post process should be run which provides the patient level classification
- PatientLevelSmokingStatus - Class in org.apache.ctakes.smokingstatus.patientLevel
-
Patient-level smoking status classification used for the AMIA 2009 paper
From PatientLevelSmokingStatus_Jan09.java revised frequency based except for assigning past smoker
if exists only past and non-smoker
- PatientLevelSmokingStatus() - Constructor for class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- pattern - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
- PatternMatch - Class in org.apache.ctakes.sideeffect.util
-
Regular expression pattern match class used in SideEffectAnnotaor:
Constructor:
PatternMatch(String expr, String in, List kw):
"expr" is an regular expression.
- PatternMatch(String, String, List<String>) - Constructor for class org.apache.ctakes.sideeffect.util.PatternMatch
-
- PatternMatch(String, String) - Constructor for class org.apache.ctakes.sideeffect.util.PatternMatch
-
- patterns - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- pCost - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- PcsClassifierAnnotator_libsvm - Class in org.apache.ctakes.smokingstatus.ae
-
- PcsClassifierAnnotator_libsvm() - Constructor for class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
-
- pDegree - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- PERIOD_PATTERN - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
vng change split sentences periods after which this pattern is seen
- PermutationUtil - Class in org.apache.ctakes.dictionary.lookup.algorithms
-
- PermutationUtil() - Constructor for class org.apache.ctakes.dictionary.lookup.algorithms.PermutationUtil
-
- PersonChainAnnotator - Class in org.apache.ctakes.coreference.ae
-
- PersonChainAnnotator() - Constructor for class org.apache.ctakes.coreference.ae.PersonChainAnnotator
-
- PersonTitleAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PersonTitleAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- PersonTitleAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- PersonTitleAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- PersonTitleAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
Never called.
- PersonTitleAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
Internal - constructor used by generator
- PersonTitleAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
- PersonTitleAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
- PersonTitleAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PersonTitleAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- PersonTitleAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- PersonTitleAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.PersonTitleAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- PersonTitleAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- PersonTitleFSM - Class in org.apache.ctakes.core.fsm.machine
-
Uses one or more finite state machines to detect measurements in the given
input of tokens.
- PersonTitleFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.PersonTitleFSM
-
Constructor
- PersonTitleToken - Class in org.apache.ctakes.core.fsm.output
-
- PersonTitleToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.PersonTitleToken
-
- PETFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- PETFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PETFeatureExtractor
-
- pGamma - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- pGamma - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
parse options
- PhraseBuilder - Interface in org.apache.ctakes.dictionary.lookup.phrasebuilder
-
Interface for building phrases from LookupToken objects.
- PhraseChunkingExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- PhraseChunkingExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PhraseChunkingExtractor
-
- PhraseTypeChunkCreator - Class in org.apache.ctakes.chunker.ae
-
This chunker creator creates annotations of type org.apache.ctakes.typesystem.type.* and
sets the chunkType feature of the annotation to the passed in parameter chunkType.
- PhraseTypeChunkCreator() - Constructor for class org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator
-
- PILL - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- ping(Properties) - Static method in class org.apache.ctakes.ytex.tools.DBPing
-
- PipeBitFinder - Enum in org.apache.ctakes.gui.pipeline.bit
-
Finds Collection Readers, Annotators, Cas Consumers (Writers), and their metadata
- PipeBitInfo - Annotation Type in org.apache.ctakes.core.pipeline
-
Annotation that should be used for Collection Readers, Annotators, and Cas Consumers (Writers).
- PipeBitInfo.Role - Enum in org.apache.ctakes.core.pipeline
-
- PipeBitInfo.TypeProduct - Enum in org.apache.ctakes.core.pipeline
-
Using an enum allows us to use a TypeSystem equivalent in the annotation
- PipeBitInfoComparator - Enum in org.apache.ctakes.gui.pipeline.bit.info
-
- PipeBitInfoPanel - Class in org.apache.ctakes.gui.pipeline.bit.info
-
- PipeBitInfoPanel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- PipeBitInfoRenderer - Class in org.apache.ctakes.gui.pipeline.bit.info
-
- PipeBitInfoRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoRenderer
-
- PipeBitInfoUtil - Class in org.apache.ctakes.core.pipeline
-
- PipeBitPainter - Enum in org.apache.ctakes.gui.pipeline.bit
-
- PipelineBuilder - Class in org.apache.ctakes.core.pipeline
-
Creates a pipeline using a small set of simple methods.
- PipelineBuilder() - Constructor for class org.apache.ctakes.core.pipeline.PipelineBuilder
-
- PiperCreator - Class in org.apache.ctakes.gui.pipeline
-
- PiperDisplayModel - Class in org.apache.ctakes.gui.pipeline
-
- PiperDisplayModel() - Constructor for class org.apache.ctakes.gui.pipeline.PiperDisplayModel
-
- PiperFileReader - Class in org.apache.ctakes.core.pipeline
-
Creates a pipeline (PipelineBuilder) from specifications in a flat plaintext file.
- PiperFileReader() - Constructor for class org.apache.ctakes.core.pipeline.PiperFileReader
-
Create and empty PipelineReader
- PiperFileReader(String) - Constructor for class org.apache.ctakes.core.pipeline.PiperFileReader
-
Create a PipelineReader and load a file with command parameter pairs for building a pipeline
- PiperFileReader(String, CliOptionals) - Constructor for class org.apache.ctakes.core.pipeline.PiperFileReader
-
Create a PipelineReader and load a file with command parameter pairs for building a pipeline
- PiperFileRunner - Class in org.apache.ctakes.core.pipeline
-
- PiperFinder - Class in org.apache.ctakes.gui.pipeline.piper
-
- PiperFinder() - Constructor for class org.apache.ctakes.gui.pipeline.piper.PiperFinder
-
- PiperInfo - Class in org.apache.ctakes.gui.pipeline.piper
-
- PiperInfo(String, String) - Constructor for class org.apache.ctakes.gui.pipeline.piper.PiperInfo
-
- PiperInfo(String, String, boolean) - Constructor for class org.apache.ctakes.gui.pipeline.piper.PiperInfo
-
- PiperTextFilter - Class in org.apache.ctakes.gui.pipeline.piper
-
- PiperTextFilter(DefaultStyledDocument) - Constructor for class org.apache.ctakes.gui.pipeline.piper.PiperTextFilter
-
- PittHeaderAnnotator() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.PittHeaderAnnotator
-
- pKernel - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- pLabel - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- placeMap(Map<K, V>) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
places each value of a map into a collection mapped with the appropriate key
- placeMap(Map<K, V>) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
places each value of a map into a collection mapped with the appropriate key
- placeMap(Map<K, V>) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
places each value of a map into a collection mapped with the appropriate key
- placeMap(Map<K, V>) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
places each value of a map into a collection mapped with the appropriate key
- placeMap(Map<K, V>) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
places each value of a map into a collection mapped with the appropriate key
- placeMap(Map<K, V>) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
places each value of a map into a collection mapped with the appropriate key
- placeValue(K, V) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
places value into a collection mapped with key
- placeValue(K, V) - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
places value into a collection mapped with key
- placeValue(K, V) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
places value into a collection mapped with key
- placeValue(K, V) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
places value into a collection mapped with key
- placeValue(K, V) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
places value into a collection mapped with key
- placeValue(K, V) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
places value into a collection mapped with key
- pLambaU - Static variable in class org.apache.ctakes.ytex.kernel.SvmlinEvaluationParser
-
- pLambda - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- pLambdaW - Static variable in class org.apache.ctakes.ytex.kernel.SvmlinEvaluationParser
-
- pLaplacian - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- pMu - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- PolarityCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- PolarityCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- PolarityCotrainingTests - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), run against the test directories
for that attribute, using models that are under the models-dir.
- PolarityCotrainingTests() - Constructor for class org.apache.ctakes.assertion.train.PolarityCotrainingTests
-
- PolarityCotrainingTrain - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), train a model using the data
in the training directories for that attribute, and store the model under the models-dir
Note that this uses constants within
AssertionConst for the directory names.
- PolarityCotrainingTrain() - Constructor for class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- PolarityDomainAdaptationTests - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), run against the test directories
for that attribute, using models that are under the models-dir.
- PolarityDomainAdaptationTests() - Constructor for class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTests
-
- PolarityDomainAdaptationTrain - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), train a model using the data
in the training directories for that attribute, and store the model under the models-dir
Note that this uses constants within
AssertionConst for the directory names.
- PolarityDomainAdaptationTrain() - Constructor for class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- PolarityFedaCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- PolarityFedaCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- PolarityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
Never called.
- PolarityModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
Internal - constructor used by generator
- PolarityModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
- PolarityModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
- PolarityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Used to indicate that a procedure or assertion did not occur or does not exist.
- PolarityModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
-
initialize variables to correspond with Cas Type and Features
- PolyKernel - Class in org.apache.ctakes.utils.kernel
-
- PolyKernel(int, double, boolean) - Constructor for class org.apache.ctakes.utils.kernel.PolyKernel
-
- PolyKernel() - Constructor for class org.apache.ctakes.utils.kernel.PolyKernel
-
- populateMinorityClass() - Method in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- portionOfDataToUse - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- portionOfDataToUse - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- POS_DATA_FILE_PARAM - Static variable in class org.apache.ctakes.postagger.OpenNLPPOSCollectionReader
-
"PosDataFile" is a required, single, string parameter that specifies the
location of a data file that contains part-of-speech data in it.
- POS_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.postagger.POSTagger
-
"PosModelFile" is a required, single, string parameter that contains the
file name of the part of speech tagger model.
- POS_MODEL_PARAM - Static variable in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- POS_TAGGER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- PositionedSplitPane - Class in org.apache.ctakes.gui.component
-
- PositionedSplitPane() - Constructor for class org.apache.ctakes.gui.component.PositionedSplitPane
- PositionedSplitPane(int) - Constructor for class org.apache.ctakes.gui.component.PositionedSplitPane
- PositionedSplitPane(int, boolean) - Constructor for class org.apache.ctakes.gui.component.PositionedSplitPane
- PositionedSplitPane(int, Component, Component) - Constructor for class org.apache.ctakes.gui.component.PositionedSplitPane
- PositionedSplitPane(int, boolean, Component, Component) - Constructor for class org.apache.ctakes.gui.component.PositionedSplitPane
- positions - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
- posModelUri - Variable in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- postagger - Variable in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- POSTagger - Class in org.apache.ctakes.postagger
-
- POSTagger() - Constructor for class org.apache.ctakes.postagger.POSTagger
-
- PostLookupFilter - Interface in org.apache.ctakes.dictionary.lookup.filter
-
- PostLookupFilterGroupImpl - Class in org.apache.ctakes.dictionary.lookup.filter
-
Groups multiple PostLookupFilter objects together and applies boolean logic
to them.
- PostLookupFilterGroupImpl(PostLookupFilter[], int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.PostLookupFilterGroupImpl
-
Constructor
- postprocess() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- pOutput - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
distance files of the form label1_dist_pearson_5.txt parse out
the metric and degree from the file name.
- POWDER - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- PP - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PP - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- PP - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- PP - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- PP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP
-
Never called.
- PP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP
-
Internal - constructor used by generator
- PP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP
-
- PP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP
-
- PP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- PP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- PP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A prepositional phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- PP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PP_Type
-
initialize variables to correspond with Cas Type and Features
- pPercent - Static variable in class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- precededByH_O(JCas, Annotation) - Static method in class org.apache.ctakes.assertion.attributes.history.HistoryAttributeClassifier
-
- PrecedingWithPadding - Class in org.apache.ctakes.core.cleartk
-
- PrecedingWithPadding(int, int) - Constructor for class org.apache.ctakes.core.cleartk.PrecedingWithPadding
-
- precision() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- precision(OUTCOME_TYPE) - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- PrecisionBaselineEventTimeRelationAnnotator - Class in org.apache.ctakes.temporal.ae.baselines
-
- PrecisionBaselineEventTimeRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.baselines.PrecisionBaselineEventTimeRelationAnnotator
-
- PrecisionTermConsumer - Class in org.apache.ctakes.dictionary.lookup2.consumer
-
Refine a collection of dictionary terms to only contain the most specific variations:
"colon cancer" instead of "cancer", performed by span inclusion / complete containment, not overlap
Author: SPF
Affiliation: CHIP-NLP
Date: 1/9/14
- PrecisionTermConsumer(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.PrecisionTermConsumer
-
- PrecisionTermConsumer(UimaContext, Properties, UmlsConceptCreator) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.PrecisionTermConsumer
-
- Predicate - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate() - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate
-
Never called.
- Predicate(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate
-
Internal - constructor used by generator
- Predicate(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate
-
- Predicate(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate
-
- Predicate_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicates are typically verbs and may participate in SemanticRoleRelations.
- Predicate_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
initialize variables to correspond with Cas Type and Features
- PredicateArgumentExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- PredicateArgumentExtractor(JCas) - Constructor for class org.apache.ctakes.temporal.ae.feature.PredicateArgumentExtractor
-
- predict(svm_node[]) - Method in class org.apache.ctakes.coreference.util.AbstractClassifier
-
- predict(svm_node[], TreebankNode) - Method in class org.apache.ctakes.coreference.util.AbstractClassifier
-
- preExecutionTest() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- preExecutionTest() - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- PREFERRED_TERM_UNKNOWN - Static variable in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- PREFERRED_TERM_UNKNOWN - Static variable in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- prefix - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- PrefixFileFilter(String) - Constructor for class org.apache.ctakes.ytex.kernel.FileUtil.PrefixFileFilter
-
- PREFTERM - Static variable in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- PreLookupFilter - Interface in org.apache.ctakes.dictionary.lookup.filter
-
- prepare(String, String, Map<String, Object>) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
run the prepare script if defined.
- prepare(String, String) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
run 'preparation' statements.
- prepareXMIsFor(List<Integer>) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- prepend(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- prepend(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- prepend(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- prependOptional(DependencyRegex) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- prependOptional(DEPNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- prependOptional(ConllDependencyNode[]) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- PrepositionFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Features that indicate whether there is a preposition between the two arguments.
- PrepositionFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PrepositionFeatureExtractor
-
- preprocess(File) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- preprocess() - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- preprocess() - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- PreprocessAndWriteXmi - Class in org.apache.ctakes.coreference.cc
-
- PreprocessAndWriteXmi() - Constructor for class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi
-
- PreprocessAndWriteXmi.Options - Class in org.apache.ctakes.coreference.cc
-
- PreprocessAndWriteXmi.SerializeDocumentToXMI - Class in org.apache.ctakes.coreference.cc
-
- preprocessDir - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- preprocessForDev - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- preprocessForTest - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- PreProcessor - Interface in org.apache.ctakes.preprocessor
-
- preprocessRootDirectory - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
DON'T CHANGE THESE
- PreserveCertainEventEventRelationsInGold - Class in org.apache.ctakes.temporal.duration
-
Preserve only those event-event relations whose both event arguments have duration data.
- PreserveCertainEventEventRelationsInGold() - Constructor for class org.apache.ctakes.temporal.duration.PreserveCertainEventEventRelationsInGold
-
- PreserveCertainEventsInGold - Class in org.apache.ctakes.temporal.duration
-
Preserve only those events that have duration data.
- PreserveCertainEventsInGold() - Constructor for class org.apache.ctakes.temporal.duration.PreserveCertainEventsInGold
-
- PreserveCertainEventTimeRelationsInGold - Class in org.apache.ctakes.temporal.duration
-
Preserve only those event-time relations whose event argument has duration data
and whose time argument can be normalized using Steve's timex normalizer.
- PreserveCertainEventTimeRelationsInGold() - Constructor for class org.apache.ctakes.temporal.duration.PreserveCertainEventTimeRelationsInGold
-
- PreserveEventEventRelations() - Constructor for class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations
-
- PreserveUMLSEventEventRelationsInGold - Class in org.apache.ctakes.temporal.duration
-
Preserve only those event-event relations whose both arguments have covering system event mentions.
- PreserveUMLSEventEventRelationsInGold() - Constructor for class org.apache.ctakes.temporal.duration.PreserveUMLSEventEventRelationsInGold
-
- PreserveUMLSEventTimeRelationsInGold - Class in org.apache.ctakes.temporal.duration
-
Preserve only those event-time relations whose event argument
was found by ctakes dictionary lookup (i.e.
- PreserveUMLSEventTimeRelationsInGold() - Constructor for class org.apache.ctakes.temporal.duration.PreserveUMLSEventTimeRelationsInGold
-
- PrettyTextWriter - Class in org.apache.ctakes.core.cc.pretty.plaintext
-
Writes Document text, pos, semantic types and cuis to file.
- PrettyTextWriter() - Constructor for class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriter
-
- PrettyTextWriterFit - Class in org.apache.ctakes.core.cc.pretty.plaintext
-
Writes Document text, pos, semantic types and cuis.
- PrettyTextWriterFit() - Constructor for class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterFit
-
- PrettyTextWriterUima - Class in org.apache.ctakes.core.cc.pretty.plaintext
-
Writes Document text, pos, semantic types and cuis.
- PrettyTextWriterUima() - Constructor for class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterUima
-
- Prevents - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- Prevents - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- Prevents - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- Prevents - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- Prevents() - Constructor for class org.apache.ctakes.typesystem.type.relation.Prevents
-
Never called.
- Prevents(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Prevents
-
Internal - constructor used by generator
- Prevents(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.Prevents
-
- Prevents_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- Prevents_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- Prevents_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- Prevents_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- Prevents_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.Prevents_Type
-
initialize variables to correspond with Cas Type and Features
- PreventsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PreventsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- PreventsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- PreventsTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- PreventsTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
Never called.
- PreventsTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
Internal - constructor used by generator
- PreventsTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
- PreventsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PreventsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- PreventsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- PreventsTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- PreventsTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- print() - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
-
- printAnnotation - Variable in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- printCommon() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Prints common elements along with their attributes in the two XCAS files
to stdout.
- printDiff() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Prints elements that are unique to each XCAS file to stdout.
- printDiff(XcasFile, XcasFile) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Prints elements that are unique to each XCAS file to stdout.
- printErrors - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- printErrors - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- PrintEventAnnotations() - Constructor for class org.apache.ctakes.temporal.pipelines.EventPrintingPipeline.PrintEventAnnotations
-
- PrintFailedTimeNormalizations - Class in org.apache.ctakes.temporal.data.analysis
-
- PrintFailedTimeNormalizations() - Constructor for class org.apache.ctakes.temporal.data.analysis.PrintFailedTimeNormalizations
-
- printHTML(Writer) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Writes an HTML summary of the comparison of the two XCAS files.
- printHTML(XcasFile, XcasFile, Writer) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Writes an HTML summary of the comparison of the two specified XCAS files.
- PrintInconsistentAnnotations - Class in org.apache.ctakes.temporal.data.analysis
-
- PrintInconsistentAnnotations() - Constructor for class org.apache.ctakes.temporal.data.analysis.PrintInconsistentAnnotations
-
- printInstances - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- PrintNonrelatedEvents - Class in org.apache.ctakes.temporal.data.analysis
-
- PrintNonrelatedEvents() - Constructor for class org.apache.ctakes.temporal.data.analysis.PrintNonrelatedEvents
-
- PrintNormalizedTemporalExpressions - Class in org.apache.ctakes.temporal.data.analysis
-
Print the time units produced by Steven Bethard's TimeEx normalizer
for temporal expressions in the gold standard.
- PrintNormalizedTemporalExpressions() - Constructor for class org.apache.ctakes.temporal.data.analysis.PrintNormalizedTemporalExpressions
-
- printOverlapping - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- printRelationAnnotations(String, Collection<BinaryTextRelation>) - Static method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- printRelations - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase
-
- PrintRelations - Class in org.apache.ctakes.temporal.eval
-
- PrintRelations() - Constructor for class org.apache.ctakes.temporal.eval.PrintRelations
-
- PrintRelationStatistics - Class in org.apache.ctakes.relationextractor.eval
-
- PrintRelationStatistics() - Constructor for class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics
-
- PrintRelationStatistics.Options - Class in org.apache.ctakes.relationextractor.eval
-
- printResults(String, List) - Static method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
Prints out the tokenized results, for debug use.
- printScore(Map<String, AnnotationStatisticsCompact<String>>, String) - Static method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- printToFile() - Static method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- printUniq(int) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Prints elements that are unique to XCAS file i.
- printUsage() - Static method in class org.apache.ctakes.postagger.TagDictionaryCreator
-
- PROB_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- ProbabilityDistribution - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution() - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
Never called.
- ProbabilityDistribution(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
Internal - constructor used by generator
- ProbabilityDistribution(JCas) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
- ProbabilityDistribution_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution_Type - Class in org.apache.ctakes.typesystem.type.util
-
A brute force probability distribution for discrete variables.
- ProbabilityDistribution_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type
-
initialize variables to correspond with Cas Type and Features
- probabilityOfKeepingADefaultExample - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- probabilityOfKeepingANegativeExample - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- PROBABLE_STATUS - Static variable in class org.apache.ctakes.core.fsm.output.StatusIndicator
-
- PROBABLE_STATUS - Static variable in class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
-
- PROBLEM - Static variable in class org.apache.ctakes.assertion.stub.ConceptType
-
- problemSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- probViewname - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteAnaforaXML
-
- Procedure - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure
-
Never called.
- Procedure(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure
-
Internal - constructor used by generator
- Procedure(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure
-
- Procedure_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate).
- Procedure_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
initialize variables to correspond with Cas Type and Features
- ProcedureDevice - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice() - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
Never called.
- ProcedureDevice(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
Internal - constructor used by generator
- ProcedureDevice(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
- ProcedureDevice_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDevice_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
-
initialize variables to correspond with Cas Type and Features
- ProcedureDeviceModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
Never called.
- ProcedureDeviceModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
Internal - constructor used by generator
- ProcedureDeviceModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
- ProcedureDeviceModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
- ProcedureDeviceModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Corresponds to the UMLS Devices semantic group: medical device and research device.
- ProcedureDeviceModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type
-
initialize variables to correspond with Cas Type and Features
- ProcedureMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
Never called.
- ProcedureMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
Internal - constructor used by generator
- ProcedureMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
- ProcedureMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
- ProcedureMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (Procedure) Event.
- ProcedureMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
initialize variables to correspond with Cas Type and Features
- ProcedureMethod - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod() - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
Never called.
- ProcedureMethod(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
Internal - constructor used by generator
- ProcedureMethod(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
- ProcedureMethod_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethod_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
-
initialize variables to correspond with Cas Type and Features
- ProcedureMethodModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
Never called.
- ProcedureMethodModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
Internal - constructor used by generator
- ProcedureMethodModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
- ProcedureMethodModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
- ProcedureMethodModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The way or the equipment used to give or administration something (medication, test).
- ProcedureMethodModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type
-
initialize variables to correspond with Cas Type and Features
- process(JCas) - Method in class org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
- process(JCas) - Method in class org.apache.ctakes.assertion.cr.GoldEntityAndAttributeReader
-
- process(JCas) - Method in class org.apache.ctakes.assertion.cr.MiPACQKnowtatorXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.OnlyGoldAssertions
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceAnnotationsSystemAssertionClearer
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceIdentifiedAnnotationsSystemToGoldCopier
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReferenceSupportingAnnotationsSystemToGoldCopier
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.ReplaceCTakesEntityMentionsAndModifiersWithGold
-
- process(JCas) - Method in class org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
-
Copy all annotations of the given types from the corresponding cas that has a gold view to the current cas
- process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
- process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AlternateCuePhraseAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster
-
Invokes this annotator's analysis logic.
- process(JCas) - Method in class org.apache.ctakes.chunker.ae.Chunker
-
- process(JCas) - Method in class org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator
-
Method invoked by UIMA framework to process a document
- process(JCas) - Method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.CopyNPChunksToLookupWindowAnnotations
-
- process(JCas) - Method in class org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.RemoveEnclosedLookupWindows
-
- process() - Method in class org.apache.ctakes.clinicalpipeline.runtime.BagOfAnnotationsGenerator
-
- process(JCas) - Method in class org.apache.ctakes.constituency.parser.ae.ConstituencyParser
-
- process(JCas) - Method in class org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.CopyAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.DocumentIdPrinterAnalysisEngine
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.FilterAnnotator
-
Checks if the annotation is of the type to be retained.
- process(JCas) - Method in class org.apache.ctakes.core.ae.ListAnnotator
- process(JCas) - Method in class org.apache.ctakes.core.ae.ListEntryNegator
-
Sets negation for disease/disorder and sign/symptom annotations in lists
- process(JCas) - Method in class org.apache.ctakes.core.ae.ListSentenceFixer
-
Where Sentence annotations and List entry annotation ends overlap, Sentences are abbreviated.
- process(JCas) - Method in class org.apache.ctakes.core.ae.NullAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.OverlapAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.ParagraphAnnotator
- process(JCas) - Method in class org.apache.ctakes.core.ae.ParagraphSentenceFixer
-
Where Sentence annotations and paragraph annotations overlap, Sentences are abbreviated or removed.
- process(JCas) - Method in class org.apache.ctakes.core.ae.RegexSectionizer
- process(JCas) - Method in class org.apache.ctakes.core.ae.SectionSegmentAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.core.ae.SentenceDetector
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.core.ae.StartFinishLogger
- process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
Entry point for processing.
- process(CAS) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
- process(CAS) - Method in class org.apache.ctakes.core.cc.CuiCountFileWriter
- process(JCas) - Method in class org.apache.ctakes.core.cc.CuiCountFileWriter
-
Process the jcas and write cuis and their counts.
- process(CAS) - Method in class org.apache.ctakes.core.cc.pretty.html.HtmlTextWriter
- process(JCas) - Method in class org.apache.ctakes.core.cc.pretty.html.HtmlTextWriter
-
Process the jcas and write pretty sentences to file.
- process(JCas) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriter
-
Process the jcas and write pretty sentences to file.
- process(JCas) - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriter
-
Process the jcas and write sentence property lists to file.
- process(CAS) - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterFit
- process(CAS) - Method in class org.apache.ctakes.core.cc.TextSpanWriter
- process(JCas) - Method in class org.apache.ctakes.core.cc.TextSpanWriter
-
Process the jcas and write pretty sentences to file.
- process(CAS) - Method in class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
Processes the CAS which was populated by the TextAnalysisEngines.
- process(JCas) - Method in class org.apache.ctakes.core.pipeline.CuiCollector.CuiCollectorEngine
-
- process(JCas) - Method in class org.apache.ctakes.core.pipeline.EntityCollector.EntityCollectorEngine
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.CoreferenceChainScoringOutput
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.DeterministicMarkableAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MarkableHeadTreeCreator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MarkableSalienceAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MentionClusterCoreferenceAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MentionClusterRankingCoreferenceAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableCreator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkableExpander
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqMarkablePairGenerator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.MipacqSvmChainCreator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.ae.PersonChainAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.cc.ODIEVectorFileWriter
-
- process(JCas) - Method in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyCoreferenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.CopyGoldMarkablesInChains
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.DocumentIDPrinter
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.ParagraphAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.ParagraphVectorAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.RelationPropagator
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.RemoveAllCoreferenceAnnotations
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.RemovePersonMarkables
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.CreatePseudoGoldMarkables
-
- process(JCas) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.SetGoldConfidence
-
- process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- process(JCas) - Method in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- process(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator
-
Entry point for processing.
- process(JCas) - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
- process(JCas) - Method in class org.apache.ctakes.drugner.ae.CopyDrugAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.drugner.ae.DrugMentionAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.lvg.ae.LvgAnnotator
-
Invokes this annotator's analysis logic.
- process(JCas) - Method in class org.apache.ctakes.lvg.ae.LvgBaseTokenAnnotator
-
Invokes this annotator's analysis logic.
- process(JCas) - Method in class org.apache.ctakes.lvg.ae.ThreadSafeLvg
-
Calls initialize on the LvgSingleton.
- process(JCas) - Method in class org.apache.ctakes.necontexts.ContextAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.postagger.ClearNLPPOSTaggerAE
-
- process(JCas) - Method in class org.apache.ctakes.postagger.POSTagger
-
- process(JCas) - Method in class org.apache.ctakes.preprocessor.ae.CdaCasInitializer
-
- process(String) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- process(String) - Method in interface org.apache.ctakes.preprocessor.PreProcessor
-
Process a document to retrieve meta data about the document.
- process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.IdentifiedAnnotationExpander
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.data.analysis.EventAndEntityViewer.RelationContextPrinter
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.data.analysis.GoldRelationViewer.RelationContextPrinter
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation.OnlyGoldModifiers
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.AddPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveCTakesMentionsAndCopyGoldRelations
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.RemoveSmallerEventMentions
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.ReplaceCTakesMentionsWithGoldMentions
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.CopyDocumentTextToGoldView
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.eval.SHARPXMI.DocumentIDAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.metastasis.MetastasisAnaforaXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.UriToDocumentTextAnnotatorCtakes
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.XMIWriter
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.RelationAnnotationViewer.RelationExtractorPrinter
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.RelationExtractorConsumer
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer.RelationExtractorPrinter
-
- process(JCas) - Method in class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
-
- process(JCas, ResultSpecification) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.ClassifiableEntries
-
- process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.KuRuleBasedClassifierAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.PcsClassifierAnnotator_libsvm
-
- process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.ResolutionAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
Invokes this annotator's analysis logic.
- process(JCas) - Method in class org.apache.ctakes.template.filler.ae.TemplateFillerAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.ClearTKDocTimeRelAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.ClearTKDocumentCreationTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.ClearTKLinkToTHYMELinkAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.ContextualModalityAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.CrossSentenceTemporalRelationAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.DeepPheAnaforaXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.DocTimeRelAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.EventAdmissionTimeAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.EventDischargeTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.EventEventCNNAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.EventToClearTKEventAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.I2B2TemporalXMLReader
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.MetaTimeAnnotator
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.NEPredicateEventAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TemporalRelationRuleAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TemporalSequenceAnnotator_ImplBase
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.TemporalSequenceAnnotator_ImplBase
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMEQAAnaforaXMLReader
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- process(JCas, Segment) - Method in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.TimexToClearTKTimexAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.ae.WithinSentenceBeforeRelationAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.EventContextAnalysisPipeline.EventAndTokenContextWriter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.EventPrinterPipeline.EventWriter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.GoldRelationViewer.RelationContextPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.PrintNormalizedTemporalExpressions
-
- process(JCas) - Method in class org.apache.ctakes.temporal.data.analysis.RelationContextViewerPipeline.RelationContextPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.EventDurationDistribution.TemporalDurationExtractor
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.EventEventDurationStatistics.AnalyseRelationArgumentDuration
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.EventTimeDurationStatistics.AnalyseRelationArgumentDuration
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation.ProcessRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.PreserveCertainEventEventRelationsInGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.PreserveCertainEventsInGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.PreserveCertainEventTimeRelationsInGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.PreserveUMLSEventEventRelationsInGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.duration.PreserveUMLSEventTimeRelationsInGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromGold
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyFromSystem
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EntityMentionRemover
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.EventMentionRemover
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.PittHeaderAnnotator
-
Grabs the document time from the header
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.RemoveEnclosedLookupWindows
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.TimexAnnotationCorrector
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteAnaforaXML
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteI2B2XML
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveNonTLINKRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties.ClearEventProperties
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.ClearEventProperties
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.CopyHeadEventDocTimeRel2GoldEvent
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.KeepEventMentionsCoveredByGoldMentions
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe.ReplaceCTakesMentionsWithGoldMentions
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveLongDistanceEERelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveLongDistanceEERelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveLongDistanceEERelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties.ClearEventProperties
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveLongDistanceEERelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveNonUMLSEtEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.FindLongDisRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.RemoveNonTLINKRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.RemoveNullArgumentRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.OverwriteTemporalRelationToSystem
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.RemoveGoldAttributes
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveNonUMLSEtEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveNonUMLSEtEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.eval.RemoveTreeAlignedMentions
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPosBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventPositionBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndBIOBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenAndPosBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePosBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimePositionBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndBIOBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenAndPosBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.DtrRelPrinter.DocTimeRelSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.EventEventAllPairRelPrinter.RelationSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.EventEventRelPositionPrinter.RelationSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.EventEventRelPrinter.RelationSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.EventTimeRelPositionPrinter.RelationSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.EventTimeRelPrinter.RelationSnippetPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinter.EventPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinterWithLabels.EventPrinter
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveNonTLINKRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveNonUMLSEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.AddEEPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddClosure
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddContain2Overlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddFlippedOverlap
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddPotentialRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.AddTransitiveContainsRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.CountCloseRelation
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.Overlap2Contains
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveCrossSentenceRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveEventEventRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveNonUMLSEtEvents
-
- process(JCas) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation.RemoveRelations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.pipelines.EventPrintingPipeline.PrintEventAnnotations
-
- process(JCas) - Method in class org.apache.ctakes.temporal.pipelines.FullTemporalExtractionPipeline.CopyPropertiesToTemporalEventAnnotator
-
- process(String) - Static method in class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Creates a new XcasFile object from the specified file.
- process(File) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
Parses the specified file and returns a parsed XcasFile object.
- process(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
Parses the specified file and returns a parsed XcasFile object.
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.DateAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.DBConsumer
-
call the documentMapperService to save the document.
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
-
Add Segment annotations to the cas.
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
-
- process(JCas) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
Entry point for processing.
- process(JCas) - Method in class org.mitre.medfacts.uima.ZoneAnnotator
-
- processAE(AnalysisEngine, File) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
This method simply calls
#createAnalysisEngineJCas(File, File, String) with the
charSetName equal to "UTF-8".
- processAE(AnalysisEngine, File, String) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
This method reads in the text from the text file using the provided
character set and then calls #getJCas(File, String)
- processAE(AnalysisEngine, String) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
This method creates a JCas for the provided analysis engine descriptor
file and then processes the provided text and returns the JCas.
- processAnnotationFile(File) - Method in class org.apache.ctakes.assertion.stub.AssertionFileProcessor
-
- processCas(CAS) - Method in class org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.CasConsumer
-
Create an xml file from the data in the cas.
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.HtmlTableCasConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterUima
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterUima
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.SentenceTokensPrinter
-
Saves the (base) tokens of each sentence on a separate line, separated by spaces
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenFreqCasConsumer
-
Iterates through all of the WordTokenAnnotation's, gets the covered text for each annotation
and increments the frequency count for that text.
- processCas(CAS) - Method in class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.dependency.parser.DependencyNodeWriter
-
Create an xml file from the data in the cas.
- processCas(CAS) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
- processCas(CAS) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- processCas(CAS) - Method in class org.apache.ctakes.smokingstatus.cc.RecordResolutionCasConsumer
-
- ProcessDirBuilderRunner - Class in org.apache.ctakes.examples.pipeline
-
- ProcessDirPiperRunner - Class in org.apache.ctakes.examples.pipeline
-
- processDocument(JCas) - Static method in class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation
-
- processForEntityType(JCas, int, Class<? extends IdentifiedAnnotation>) - Method in class org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine
-
- processLine(String) - Method in class org.apache.ctakes.relationextractor.data.analysis.Utils.Callback
-
- processLine(String) - Method in class org.apache.ctakes.temporal.duration.Utils.Callback
-
- ProcessLinesClinicalRunner - Class in org.apache.ctakes.examples.pipeline
-
- ProcessRelations() - Constructor for class org.apache.ctakes.temporal.duration.ExtractDurationsUsingContainsRelation.ProcessRelations
-
- processRow(ResultSet) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.ConceptInstanceMapExtractor
-
- processSingleDocument() - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- processWindow(JCas, Annotation, Map<RareWordDictionary, CollectionMap<TextSpan, Long, ? extends Collection<Long>>>) - Method in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
Processes a window of annotations for dictionary terms
- processWindow(JCas, Annotation, Map<RareWordDictionary, CollectionMap<TextSpan, Long, ? extends Collection<Long>>>) - Method in interface org.apache.ctakes.dictionary.lookup2.ae.WindowProcessor
-
Processes a window of annotations for dictionary terms
- PRODIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- ProductIconFactory - Enum in org.apache.ctakes.gui.pipeline.bit.info
-
- ProductKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
compute the product of delegate kernels
- ProductKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.ProductKernel
-
- prompt(String) - Static method in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
- promptForAE() - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
copied from AnnotationViewerDialog.
- promptForAE() - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
If the current AE filename is not know ask for it.
- PRON - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- PronounMarkable - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-coreference/target/jcasgen/typesystem.xml
- PronounMarkable() - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable
-
Never called.
- PronounMarkable(int, TOP_Type) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable
-
Internal - constructor used by generator
- PronounMarkable(JCas) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable
-
- PronounMarkable(JCas, int, int) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable
-
- PronounMarkable_Type - Class in org.apache.ctakes.coreference.type
-
Updated by JCasGen Mon Apr 24 21:42:42 EDT 2017
- PronounMarkable_Type(JCas, Type) - Constructor for class org.apache.ctakes.coreference.type.PronounMarkable_Type
-
initialize variables to correspond with Cas Type and Features
- PropertiesFile - Class in org.apache.ctakes.jdl.common
-
Access to a properties file.
- PropertiesFile() - Constructor for class org.apache.ctakes.jdl.common.PropertiesFile
-
- PropertyAeFactory - Enum in org.apache.ctakes.core.util
-
This factory can load plain old java .properties files and pass the specified properties as parameters for AE creation.
- propertyChange(PropertyChangeEvent) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
- PropertyTextWriter - Class in org.apache.ctakes.core.cc.property.plaintext
-
Writes Document event and anatomic information to file.
- PropertyTextWriter() - Constructor for class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriter
-
- PropertyTextWriterFit - Class in org.apache.ctakes.core.cc.property.plaintext
-
Writes Document event and anatomic information to file.
- PropertyTextWriterFit() - Constructor for class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterFit
-
- PropertyTextWriterUima - Class in org.apache.ctakes.core.cc.property.plaintext
-
Writes Document event and anatomic information to file.
- PropertyTextWriterUima() - Constructor for class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriterUima
-
- PropFile - Class in org.apache.ctakes.jdl.common
-
Access to a properties file.
- PropFile() - Constructor for class org.apache.ctakes.jdl.common.PropFile
-
- props - Variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl
-
- PRT - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PRT - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- PRT - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- PRT - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- PRT() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT
-
Never called.
- PRT(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT
-
Internal - constructor used by generator
- PRT(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT
-
- PRT(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT
-
- PRT_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PRT_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- PRT_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- PRT_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A particle, e.g., "out" in "rule out"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- PRT_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PRT_Type
-
initialize variables to correspond with Cas Type and Features
- PSESentence - Class in org.apache.ctakes.sideeffect.type
-
sentence(s) that contains potential side effect and causing drug
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PSESentence() - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence
-
Never called.
- PSESentence(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence
-
Internal - constructor used by generator
- PSESentence(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence
-
- PSESentence(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence
-
- PSESentence_Type - Class in org.apache.ctakes.sideeffect.type
-
sentence(s) that contains potential side effect and causing drug
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PSESentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentence_Type
-
initialize variables to correspond with Cas Type and Features
- PSESentenceAnnotator - Class in org.apache.ctakes.sideeffect.ae
-
Identify the sentence(s) that contains PSE (signs/symptoms or
disease/disorder) and drugs and add them to PSESentence.
- PSESentenceAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator
-
- PSESentenceFeature - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- PSESentenceFeature() - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
Never called.
- PSESentenceFeature(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
Internal - constructor used by generator
- PSESentenceFeature(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
- PSESentenceFeature(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
- PSESentenceFeature_Type - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- PSESentenceFeature_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
initialize variables to correspond with Cas Type and Features
- PunctuationFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Features that capture punctuation marks between the two arguments.
- PunctuationFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.PunctuationFeatureExtractor
-
- PunctuationToken - Interface in org.apache.ctakes.core.fsm.token
-
- PunctuationToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
Never called.
- PunctuationToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
Internal - constructor used by generator
- PunctuationToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
- PunctuationToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
- PunctuationToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
- PunctuationToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type
-
initialize variables to correspond with Cas Type and Features
- PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- PunctuationTokenAdapter(PunctuationToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.PunctuationTokenAdapter
-
- PunctuationTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
Adapts a Context Free Tokenizer token into a Context Dependent Tokenizer
PunctuationToken.
- PunctuationTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.PunctuationTokenAdapter
-
- PunctuationValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- PunctuationValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition
-
- put(K, List<V>) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- put(K, T) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- put(K, Set<V>) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- put(K, Set<V>) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- put(K, T) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- put(String, K, V) - Static method in class org.apache.ctakes.utils.struct.MapFactory
-
- putAll(Map<? extends K, ? extends List<V>>) - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- putAll(Map<? extends K, ? extends T>) - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- putAll(Map<? extends K, ? extends Set<V>>) - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- putAll(Map<? extends K, ? extends Set<V>>) - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- putAll(Map<? extends K, ? extends T>) - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- putInBin(String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Take the time unit from Bethard noramlizer
and return a coarser time unit, i.e.
- pWeight - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- SalienceFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- SalienceFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.SalienceFeatureExtractor
-
- sample() - Method in class org.apache.ctakes.relationextractor.data.CategoricalDistribution
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.CombineCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DayNightWordCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalRangeCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DecimalValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.DisjoinCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.HourMinuteCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerRangeCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.IntegerValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NegateCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.NumberCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.PunctuationValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RangeCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.RomanNumeralCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.SymbolValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextSetCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.TextValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordSetCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.core.fsm.condition.WordValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition
-
Called to check if the conditional meets the criteria defined by this
state.
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DecimalStrengthStatusCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DosageCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.DrugChangeStatusCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FormCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.FrequencyUnitCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeDosageCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.RouteCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition
-
- satisfiedBy(Object) - Method in class org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition
-
- save(URI) - Method in class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- save(URI) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.OddsRatioFeatureSelection
-
- save(URI) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- saveAnnotation - Variable in class org.apache.ctakes.examples.ae.ExampleHelloWorldAnnotator
-
- saveAnnotations(JCas, Map<JdbcWriterTemplate.I2b2FieldInfo, Object>, String, String, Iterable<IdentifiedAnnotation>, boolean) - Method in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
- saveClassifierEvaluation(ClassifierEvaluation, Map<Integer, String>, boolean) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- saveClassifierEvaluation(ClassifierEvaluation, Map<Integer, String>, boolean, boolean, Integer) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- saveClassifierEvaluation(ClassifierEvaluation, Map<Integer, String>, boolean) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- saveClassifierEvaluation(ClassifierEvaluation, Map<Integer, String>, boolean, boolean, Integer) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- saveDocument(JCas, String, boolean, boolean, boolean, Set<String>) - Method in interface org.apache.ctakes.ytex.uima.mapper.DocumentMapperService
-
Save Document and all mapped annotations.
- saveDocument(JCas, String, boolean, boolean, boolean, Set<String>) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- saveFeatureEvaluation(FeatureEvaluation, List<FeatureRank>) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- saveFeatureEvaluation(FeatureEvaluation, List<FeatureRank>) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- saveFeatureParentChild(FeatureParentChild) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- saveFeatureParentChild(FeatureParentChild) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- saveFold(CrossValidationFold) - Method in interface org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDao
-
- saveFold(CrossValidationFold) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- savePreferences() - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
Save user's preferences using Java's Preference API.
- SaxParser - Class in org.apache.ctakes.jdl.data.xml
-
To parse SAX.
- SaxParser(String) - Constructor for class org.apache.ctakes.jdl.data.xml.SaxParser
-
- SBAR - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- SBAR - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- SBAR - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- SBAR - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- SBAR() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
-
Never called.
- SBAR(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
-
Internal - constructor used by generator
- SBAR(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
-
- SBAR(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR
-
- SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- SBAR_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A subordinate clause
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- SBAR_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SBAR_Type
-
initialize variables to correspond with Cas Type and Features
- scan() - Method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitFinder
-
- scan() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperFinder
-
- SCHEMA_FULL_CHECKING_FEATURE_ID - Static variable in class org.apache.ctakes.jdl.data.xml.SaxParser
-
Schema full checking feature id
(http://apache.org/xml/features/valid...full-checking).
- SCHEMA_NONS_LOCATION_ID - Static variable in class org.apache.ctakes.jdl.data.xml.SaxParser
-
Schema nons location id.
- SCHEMA_VALIDATION_FEATURE_ID - Static variable in class org.apache.ctakes.jdl.data.xml.SaxParser
-
Schema validation feature id
(http://apache.org/xml/features/validation/schema).
- SchemaUtil - Class in org.apache.ctakes.jdl.data.xml
-
Utility to manage Schema.
- SCOPE - Static variable in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
scope property key
- SCOPE_FOLD - Static variable in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
fold value for scope
- SCOPE_LABEL - Static variable in interface org.apache.ctakes.ytex.kernel.SparseDataFormatter
-
label value for scope
- SCOPE_MODEL_PARAM - Static variable in class org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngineFit
-
- SCOPE_ORDER_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"ScopeOrder" is a required, multiple, string parameter that specifies the
order that the scopes should be processed in.
- ScopeParser - Class in org.apache.ctakes.assertion.stub
-
- ScopeParser(String, String) - Constructor for class org.apache.ctakes.assertion.stub.ScopeParser
-
- scopes - Variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
- score(Span, Span) - Static method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- SCRIPT_DIR_PARAM - Static variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- scriptDir - Variable in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- ScriptStringFeatureDataWriter<T extends ScriptStringOutcomeClassifierBuilder<ScriptStringOutcomeClassifier>> - Class in org.apache.ctakes.temporal.keras
-
- ScriptStringFeatureDataWriter(File) - Constructor for class org.apache.ctakes.temporal.keras.ScriptStringFeatureDataWriter
-
- ScriptStringOutcomeClassifier - Class in org.apache.ctakes.temporal.keras
-
Copyright (c) 2016, Regents of the University of Colorado
All rights reserved.
- ScriptStringOutcomeClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<String, Integer>, File, File) - Constructor for class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifier
-
- ScriptStringOutcomeClassifierBuilder<T extends ScriptStringOutcomeClassifier> - Class in org.apache.ctakes.temporal.keras
-
- ScriptStringOutcomeClassifierBuilder() - Constructor for class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- ScriptStringOutcomeDataWriter<T extends ScriptStringOutcomeClassifierBuilder<ScriptStringOutcomeClassifier>> - Class in org.apache.ctakes.temporal.keras
-
- ScriptStringOutcomeDataWriter(File) - Constructor for class org.apache.ctakes.temporal.keras.ScriptStringOutcomeDataWriter
-
- SD_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.core.ae.SentenceDetector
-
- SD_MODEL_FILE_PARAM - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- search(String) - Method in class org.apache.ctakes.utils.wiki.WikiIndex
-
Search the index.
- searchByCui(String) - Method in interface org.apache.ctakes.ytex.web.search.DocumentSearchService
-
- searchByCui(String) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- SearchConfigBean - Class in org.apache.ctakes.ytex.web.search
-
JSF Bean that holds search configuration parameters.
- SearchConfigBean() - Constructor for class org.apache.ctakes.ytex.web.search.SearchConfigBean
-
- searchListen(ActionEvent) - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- searchListen(ActionEvent) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- SearchResult - Class in org.apache.ctakes.utils.wiki
-
- SearchResult(String, float) - Constructor for class org.apache.ctakes.utils.wiki.SearchResult
-
- secondKernel - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- secondKernelIndex - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- section_names - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- SECTION_TYPES_DESC - Static variable in class org.apache.ctakes.core.ae.BsvRegexSectionizer
-
- SECTION_TYPES_PATH - Static variable in class org.apache.ctakes.core.ae.BsvRegexSectionizer
-
- SectionFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- SectionFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.SectionFeatureExtractor
-
- SectionHeaderExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- SectionHeaderExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.SectionHeaderExtractor
-
- SectionHeaderPairer - Class in org.apache.ctakes.coreference.ae.pairing.cluster
-
- SectionHeaderPairer(int) - Constructor for class org.apache.ctakes.coreference.ae.pairing.cluster.SectionHeaderPairer
-
- SectionHeaderRelationExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- SectionHeaderRelationExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.SectionHeaderRelationExtractor
-
- sectionRegexFileUriString - Variable in class org.mitre.medfacts.uima.ZoneAnnotator
-
- sections - Variable in class org.apache.ctakes.core.ae.SectionSegmentAnnotator
-
- SECTIONS - Static variable in class org.apache.ctakes.temporal.eval.THYMEData
-
- sections_path - Variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- SectionSegmentAnnotator - Class in org.apache.ctakes.core.ae
-
Creates a single segment annotation that spans the entire document.
- SectionSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SectionSegmentAnnotator
-
- SectionType(String, String, String, boolean) - Constructor for class org.apache.ctakes.core.ae.RegexSectionizer.SectionType
-
- Segment - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
-
Never called.
- Segment(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
-
Internal - constructor used by generator
- Segment(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
-
- Segment(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment
-
- Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
A section of a clinical text, e.g., Diagnosis, Current Medications, Problem List.
- Segment_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
initialize variables to correspond with Cas Type and Features
- SegmentMetaData - Class in org.apache.ctakes.preprocessor
-
MetaData about a segment.
- SegmentMetaData() - Constructor for class org.apache.ctakes.preprocessor.SegmentMetaData
-
- SegmentRegex - Class in org.apache.ctakes.ytex.uima.model
-
Mapped to ref_segment_regex
- SegmentRegex() - Constructor for class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- SegmentRegexAnnotator - Class in org.apache.ctakes.ytex.uima.annotators
-
Annotate segments (i.e.
- SegmentRegexAnnotator() - Constructor for class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
-
- SegmentRegexDao - Interface in org.apache.ctakes.ytex.uima.dao
-
Dao to access Segment Boundary Regular Expressions.
- SegmentRegexDaoImpl - Class in org.apache.ctakes.ytex.uima.dao
-
- SegmentRegexDaoImpl() - Constructor for class org.apache.ctakes.ytex.uima.dao.SegmentRegexDaoImpl
-
- SEGMENTS_TO_SKIP - Static variable in class org.apache.ctakes.temporal.eval.THYMEData
-
- SegmentsFromBracketedSectionTagsAnnotator() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator
-
- segModelPath - Static variable in class org.apache.ctakes.core.pipeline.GenerateSentenceBIODescriptors
-
- selectBaseToken(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
-
- selectDemonAndRelative(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
-
- selectedFeatureNames - Variable in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- selectedFeatureNames - Variable in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- selectExact(JCas, Class<T>, Segment) - Static method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- SelectiveRelationAnnotationViewer - Class in org.apache.ctakes.relationextractor.pipelines
-
View relation instances in xmi files.
- SelectiveRelationAnnotationViewer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.SelectiveRelationAnnotationViewer
-
- SelectiveRelationAnnotationViewer.Options - Class in org.apache.ctakes.relationextractor.pipelines
-
- SelectiveRelationAnnotationViewer.RelationExtractorPrinter - Class in org.apache.ctakes.relationextractor.pipelines
-
- selectNE(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
-
- selectPronoun(JCas, Set<String>, Set<String>, Set<String>, Logger) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
-
- selectSentence(JCas) - Static method in class org.apache.ctakes.coreference.util.AnnotationSelector
-
- SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
Never called.
- SemanticArgument(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
Internal - constructor used by generator
- SemanticArgument(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
- SemanticArgument(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
- SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
SemanticArguments are used for predicate-argument structures (SemanticRoleRelations).
- SemanticArgument_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
initialize variables to correspond with Cas Type and Features
- SemanticClasses - Class in org.apache.ctakes.assertion.util
-
- SemanticClasses(InputStream) - Constructor for class org.apache.ctakes.assertion.util.SemanticClasses
-
- SemanticCleanupTermConsumer - Class in org.apache.ctakes.dictionary.lookup2.consumer
-
Refine a collection of dictionary terms to only contain the most specific variations:
"colon cancer" instead of "cancer", performed by span inclusion / complete containment, not overlap
Also a start at wsd by trim of overlapping terms of conflicting but related semantic group.
- SemanticCleanupTermConsumer(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.consumer.SemanticCleanupTermConsumer
-
- SemanticEnvironmentFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features.salience
-
- SemanticEnvironmentFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.salience.SemanticEnvironmentFeatureExtractor
-
- SemanticGroup - Enum in org.apache.ctakes.core.cc.pretty
-
enumeration of ctakes semantic types:
anatomical site, disease/disorder, finding (sign/symptom), test/procedure, and medication
- SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
Never called.
- SemanticRoleRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
Internal - constructor used by generator
- SemanticRoleRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
- SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Predicate-argument structure used for semantic role labeling output.
- SemanticRoleRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
initialize variables to correspond with Cas Type and Features
- SemanticSearchBean - Class in org.apache.ctakes.ytex.web.search
-
JSF Backing Bean for semanticSearch.jspx.
- SemanticSearchBean() - Constructor for class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- SemanticSimBean - Class in org.apache.ctakes.ytex.web.search
-
- SemanticSimBean() - Constructor for class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- SemanticSimBean.SimilarityEntry - Class in org.apache.ctakes.ytex.web.search
-
- SemanticSimKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- SemanticSimKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- SemanticSimRegistryBean - Class in org.apache.ctakes.ytex.web.search
-
- SemanticSimRegistryBean() - Constructor for class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- SemanticSimServiceBean - Class in org.apache.ctakes.ytex.web.search
-
- SemanticSimServiceBean() - Constructor for class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- SemanticTypeKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
Before comparing semantic distance, use this kernel to filter by semantic
type.
- SemanticTypeKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- SemanticUtil - Class in org.apache.ctakes.dictionary.lookup2.util
-
Utility class to aid in the handling of semantic groups, semantic types, and tuis.
- SemiLClassifierEvaluation - Class in org.apache.ctakes.ytex.kernel.model
-
- SemiLClassifierEvaluation() - Constructor for class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- SemiLDataFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.semil.SemiLFormatterFactory.SemiLDataFormatter
-
- SemiLEvaluationParser - Class in org.apache.ctakes.ytex.semil
-
Parse semiL output, store in DB.
- SemiLEvaluationParser() - Constructor for class org.apache.ctakes.ytex.semil.SemiLEvaluationParser
-
- SemiLFormatterFactory - Class in org.apache.ctakes.ytex.semil
-
Export data for use with SemiL.
- SemiLFormatterFactory() - Constructor for class org.apache.ctakes.ytex.semil.SemiLFormatterFactory
-
- SemiLFormatterFactory.SemiLDataFormatter - Class in org.apache.ctakes.ytex.semil
-
- sems - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionAboveLeftTreeExtractor
-
- sems - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.AssertionDependencyTreeExtractor
-
- sems - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- SenseDisambiguatorAnnotator - Class in org.apache.ctakes.ytex.uima.annotators
-
Disambiguate named entities via adapated Lesk algorithm with semantic
similarity.
- SenseDisambiguatorAnnotator() - Constructor for class org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
-
- sentDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Detect sentences in a String.
- sentDist(JCas, IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- SENTDIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- Sentence - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence() - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
-
Never called.
- Sentence(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
-
Internal - constructor used by generator
- Sentence(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
-
- Sentence(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence
-
- SENTENCE_DETECTOR_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence_Type - Class in org.apache.ctakes.typesystem.type.textspan
-
Sentences may or may not be fully-formed and grammatical.
- Sentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
initialize variables to correspond with Cas Type and Features
- SentenceAdjuster - Class in org.apache.ctakes.smokingstatus.ae
-
UIMA annotator that uses some patterns and some rules about those patterns to
adjust certain annotations.
- SentenceAdjuster() - Constructor for class org.apache.ctakes.smokingstatus.ae.SentenceAdjuster
-
- sentenceCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- SentenceDetector - Class in org.apache.ctakes.core.ae
-
Wraps the OpenNLP sentence detector in a UIMA annotator
- SentenceDetector() - Constructor for class org.apache.ctakes.core.ae.SentenceDetector
-
- SentenceDetector - Class in org.apache.ctakes.ytex.uima.annotators
-
Wraps the OpenNLP sentence detector in a UIMA annotator.
- SentenceDetector() - Constructor for class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- SentenceDetectorAnnotatorBIO - Class in org.apache.ctakes.core.ae
-
- SentenceDetectorAnnotatorBIO() - Constructor for class org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO
-
- SentenceDetectorAnnotatorBIO.FEAT_CONFIG - Enum in org.apache.ctakes.core.ae
-
- SentenceDetectorCtakes - Class in org.apache.ctakes.core.sentence
-
A sentence detector for splitting up raw text into sentences.
- SentenceDetectorCtakes(MaxentModel, DefaultSDContextGenerator, EndOfSentenceScanner) - Constructor for class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Initializes the current instance.
- SentenceDistancePairer - Class in org.apache.ctakes.coreference.ae.pairing.cluster
-
- SentenceDistancePairer(int) - Constructor for class org.apache.ctakes.coreference.ae.pairing.cluster.SentenceDistancePairer
-
- SentenceSpan - Class in org.apache.ctakes.core.sentence
-
A span of text and its offsets within some larger text
- SentenceSpan(int, int, String) - Constructor for class org.apache.ctakes.core.sentence.SentenceSpan
-
- SentenceSpan - Class in org.apache.ctakes.ytex.uima.annotators
-
A span of text and its offsets within some larger text
- SentenceSpan(int, int, String) - Constructor for class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- SentenceTokensPrinter - Class in org.apache.ctakes.core.cc
-
Saves the (base) tokens of each sentence on a separate line, separated by spaces
- SentenceTokensPrinter() - Constructor for class org.apache.ctakes.core.cc.SentenceTokensPrinter
-
- sentenceToTokenNumberMap - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- sentModelPath - Static variable in class org.apache.ctakes.core.pipeline.GenerateSentenceBIODescriptors
-
- sentPosDetect(String) - Method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Detect the position of the first words of sentences in a String.
- sentsBetween(IdentifiedAnnotation, IdentifiedAnnotation) - Static method in class org.apache.ctakes.coreference.ae.EventCoreferenceAnnotator
-
- seq - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
- seq - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
- SerializeDocumentToXMI() - Constructor for class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.SerializeDocumentToXMI
-
- serializeInstanceTrees(TreeMappingInfo, String) - Method in interface org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilder
-
- serializeInstanceTrees(TreeMappingInfo, String) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- SESentence - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- SESentence() - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
-
Never called.
- SESentence(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
-
Internal - constructor used by generator
- SESentence(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
-
- SESentence(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence
-
- SESentence_Type - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- SESentence_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SESentence_Type
-
initialize variables to correspond with Cas Type and Features
- SESentenceClassifierAnnotator - Class in org.apache.ctakes.sideeffect.ae
-
Classify side effect sentences and add them to SESentence
- SESentenceClassifierAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceClassifierAnnotator
-
- SESentenceFeatureAnnotator - Class in org.apache.ctakes.sideeffect.ae
-
Extract SE sentence (from PSESentence) features and add them to
PSESentenceFeature.
- SESentenceFeatureAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SESentenceFeatureAnnotator
-
- set(Object...) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Use of this method is order-specific
- setAbnormalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
setter for abnormalInterpretation - sets
- setAbnormalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- setAbnormalInterpretation(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
setter for abnormalInterpretation - sets
- setAbnormalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- setAlgorithm(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for alleviatingFactor - sets
- setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setAlleviatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for alleviatingFactor - sets
- setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setAlleviatingFactor(ManagesTreatsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for alleviatingFactor - sets
- setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setAlleviatingFactor(ManagesTreatsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for alleviatingFactor - sets
- setAlleviatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setAnalysisBatch(String) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
setter for anaphor - sets
- setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- setAnaphor(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
-
setter for anaphor - sets
- setAnaphor(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
- setAnaphoric_prob(double) - Method in class org.apache.ctakes.coreference.type.Markable
-
setter for anaphoric_prob - sets
- setAnaphoric_prob(int, double) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- setAnnoBaseId(int) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- setAnnoClassName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setAnnoFieldName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setAnnoMappingInfos(Set<AnnoMappingInfo>) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
initialize mapAnnoMappingInfo from the set
- setAntecedent(Markable) - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
setter for antecedent - sets Proposed antecedent
- setAntecedent(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- setAntecedentList(FSList) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet
-
setter for antecedentList - sets
- setAntecedentList(int, int) - Method in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
- setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
setter for arg1 - sets
- setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
- setArg1(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
setter for arg1 - sets
- setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
- setArg1(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
setter for arg1 - sets
- setArg1(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
- setArg2(Attribute) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
setter for arg2 - sets
- setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
- setArg2(RelationArgument) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
setter for arg2 - sets
- setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
- setArg2(Element) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
setter for arg2 - sets
- setArg2(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
- setArgument(Annotation) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
setter for argument - sets
- setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- setArgument(SemanticArgument) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
setter for argument - sets
- setArgument(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
- setAsEvaluation(ASEvaluation) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- setAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for aspect - sets
- setAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setAssertionDecoder(JarafeMEDecoder) - Method in class org.apache.ctakes.assertion.stub.AssertionDecoderConfiguration
-
- setAssertionDecoderConfiguration(AssertionDecoderConfiguration) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- setAssertionType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
setter for assertionType - sets assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else
- setAssertionType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
- setAssociatedConcept(Concept) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
setter for associatedConcept - sets
- setAssociatedConcept(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
- setAssociatedSignSymptom(ManifestationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for associatedSignSymptom - sets
- setAssociatedSignSymptom(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setAssociatedSignSymptom(ManifestationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for associatedSignSymptom - sets
- setAssociatedSignSymptom(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setAttribute(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair
-
setter for attribute - sets
- setAttribute(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
-
- setAttributeKey(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- setAttributeName(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
setter for attributeName - sets
- setAttributeName(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
-
- setAttributeName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NodeAttributeKernel
-
- setAttributeSelection(AttributeSelection) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- setAttributeStringValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
setter for attributeStringValue - sets
- setAttributeStringValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
-
- setAtui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setAui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setAui(String) - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- setAuthorSpecialty(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for authorSpecialty - sets
- setAuthorSpecialty(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setAutoCommit(boolean) - Method in class org.apache.ctakes.jdl.data.base.JdlConnection
-
- setBagOfWordsExporter(WekaBagOfWordsExporter) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- setBatchCount(int) - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter.TableSqlInfo
-
- setBatchSize(int) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setBegin(int) - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- setBegin(int) - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator.NegSpan
-
- setBegin(Integer) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setBirthDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for birthDate - sets
- setBirthDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setBitName(String, String) - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- setBitName(String, String) - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- setBitName(String) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- setBitName(String) - Method in interface org.apache.ctakes.gui.pipeline.bit.user.UserBit
-
- setBitName(String, String) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
- setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setBodyLaterality(BodyLaterality) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
- setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setBodyLaterality(BodyLateralityModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for bodyLaterality - sets
- setBodyLaterality(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setBodyLocation(LocationOf) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setBodyLocation(LocationOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for bodyLocation - sets
- setBodyLocation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
- setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setBodySide(BodySide) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
- setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setBodySide(BodySideModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for bodySide - sets
- setBodySide(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setBorderGap(int) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
The border gap is used in calculating the left and right insets of the
border.
- setCacheKeyGenerator(CacheKeyGenerator) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- setCacheKeyGenerator(CacheKeyGenerator) - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- setCacheManager(CacheManager) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- setCacheManager(CacheManager) - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- setCacheManager(CacheManager) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- setCacheManager(CacheManager) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setCacheName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CacheKernel
-
- setCacheName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- setCacheNorm(boolean) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- setCanonicalForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
setter for canonicalForm - sets
- setCanonicalForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- setCapitalization(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
setter for capitalization - sets
- setCapitalization(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- setCaps(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Sets the caps state of the token.
- setCas(byte[]) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setCategory(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for category - sets Type of Event.
- setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setCategory(String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for category - sets
- setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setCategory(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
setter for category - sets
- setCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
- setChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
setter for changeStatus - sets Indicates the drug change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
- setChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
-
- setChangeStatusBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for changeStatusBegin - sets
- setChangeStatusBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setChangeStatusEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for changeStatusEnd - sets
- setChangeStatusEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setChildAnnoBaseId(int) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- setChildAnnotationId(int) - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- setChildren(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for children - sets
- setChildren(int, TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
indexed setter for children - sets an indexed value -
- setChildren(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setChildren(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setChildren(List<Node>) - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- setChildrenArray(int[]) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setChildUimaTypeId(int) - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- setChunkType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk
-
setter for chunkType - sets
- setChunkType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
-
- setClassAuto(Integer) - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- setClasses(SortedSet<String>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setClassGold(Integer) - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- setClassIds(List<Integer>) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- setClassification(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
setter for classification - sets Smoking status classification for the given sentence.
- setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- setClassification(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
setter for classification - sets represents the document level classification that
RecordResolutionAnnotator assigns
- setClassification(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
- setClassifierEvaluation(ClassifierEvaluation) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setClassifierEvaluation(ClassifierEvaluation) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setClassifierEvaluationDao(ClassifierEvaluationDao) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- setClassifierEvaluationId(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setClassifierEvaluationIRStatId(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setClassifierInstanceEvaluationId(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setClassifierInstanceEvaluations(Map<Long, ClassifierInstanceEvaluation>) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setClassifierInstanceProbabilities(Map<Integer, Double>) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.ConditionalCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- setClassLabel(IdentifiedAnnotation, Instance<String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- setCliOptionals(CliOptionals) - Method in class org.apache.ctakes.core.pipeline.PiperFileReader
-
- setCluster(CollectionTextRelation) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
setter for cluster - sets
- setCluster(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
- setCode(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for code - sets
- setCode(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setCode(String) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setCode(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setCodingScheme(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for codingScheme - sets
- setCodingScheme(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setCodingScheme(String) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setColumnMappingInfos(Set<ColumnMappingInfo>) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setColumnName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setCommit(BigInteger) - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Sets the value of the commit property.
- setCommit(BigInteger) - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Sets the value of the commit property.
- setCommonNode(ConllDependencyNode) - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- setConcept(ConcRel) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- setConcept1(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- setConcept1(ConceptLookupBean) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setConcept1Path(List<String>) - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- setConcept2(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- setConcept2(ConceptLookupBean) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setConcept2Path(List<String>) - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- setConceptDao(ConceptDao) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- setConceptDao(ConceptDao) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setConceptDao(ConceptDao) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- setConceptDao(ConceptDao) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl
-
- setConceptDao(ConceptDao) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setConceptGraph(String) - Method in class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- setConceptGraphName(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setConceptGraphName(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setConceptId(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- setConceptID(String) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setConceptId(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- setConceptList(List<ConcRel>) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- setConceptMap(Map<String, ConcRel>) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- setConceptPair(ConceptPair) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- setConceptPair(ConceptPair) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean.SimilarityEntry
-
- setConceptPairText(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setConceptSearchService(ConceptSearchService) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- setConceptSetName(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setConceptSimilarityService(ConceptSimilarityService) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- setConceptSimilarityService(ConceptSimilarityService) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- setConceptSimilarityService(ConceptSimilarityService) - Method in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
- setConceptSimilarityService(ConceptSimilarityService) - Method in class org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguatorImpl
-
- setConceptSimilarityService(ConceptSimilarityService) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- setConceptText(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
setter for conceptText - sets
- setConceptText(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- setConceptType(String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
setter for conceptType - sets the concept type -- one of problem, treatment, or test
- setConceptType(int, String) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for conditional - sets
- setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for conditional - sets Whether the relation is conditional/hypothetical.
- setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setConditional(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for conditional - sets
- setConditional(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setConfidence(float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for confidence - sets The confidence of the annotation.
- setConfidence(int, float) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for confidence - sets
- setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setConfidence(double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for confidence - sets
- setConfidence(int, double) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setConfidence(float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for confidence - sets The confidence of the annotation.
- setConfidence(int, float) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setConfidenceScoreElement(double, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setConfidenceScoreElement(double, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setConfig(Set<String>, int) - Static method in class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- setConstant(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the constant property.
- setConstant(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Sets the value of the constant property.
- setContent(String) - Method in class org.apache.ctakes.core.util.DocumentSection
-
- setContent(Annotation) - Method in class org.apache.ctakes.coreference.type.Markable
-
setter for content - sets The markable instance, i.e., a Named Entity, pronoun Token, etc.
- setContent(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- setContents(String) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- setContext(String) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setContextualAspect(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for contextualAspect - sets
- setContextualAspect(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setContextualModality(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for contextualModality - sets
- setContextualModality(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setContractionTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
-
- setConverter(Converter) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setConverter2(CharacterOffsetToLineTokenConverter) - Method in class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- setCorpusIC(double) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- setCorpusLcs(String) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setCorpusLcsIC(Double) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setCorpusLcsTerm(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setCorpusName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- setCorpusName(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setCorpusName(String) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setCorpusName(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setCorpusName(String) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setCost(Double) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for course - sets
- setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setCourse(Course) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for course - sets
- setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setCourse(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for course - sets
- setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setCourse(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for course - sets
- setCourse(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setCoveredText(String) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setCoveredTextColumn(ColumnMappingInfo) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setCpostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for cpostag - sets
- setCpostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setCrossValidationFoldId(int) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setCrossValidationFoldId(int) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setCsv(LoadType.Csv) - Method in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
Sets the value of the csv property.
- setCuePhrase(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
setter for cuePhrase - sets cue phrase itself (from lookup list)
- setCuePhrase(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- setCuePhraseAssertionFamily(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
setter for cuePhraseAssertionFamily - sets which assertion family this cue phrase belongs to (negation, uncertainty, or conditional)
- setCuePhraseAssertionFamily(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- setCuePhraseCategory(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
setter for cuePhraseCategory - sets
- setCuePhraseCategory(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- setCuePhraseFirstWord(String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
setter for cuePhraseFirstWord - sets first word of cue phrase
- setCuePhraseFirstWord(int, String) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- setCui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
setter for cui - sets
- setCui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- setCui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setCui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setCui1(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setCui2(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setCuiText(String) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setCuiTuiQuery(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- setCurrentLineForeground(Color) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
The Color used to render the current line digits.
- setCutoff(double) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- setCvf(int) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setCvf(int) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.InfoContentEvaluatorImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.kernel.tree.InstanceTreeBuilderImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMUtilImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- setDataSource(DataSource) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- setDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
setter for date - sets
- setDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- setDate(String) - Method in class org.apache.ctakes.ytex.uima.types.Date
-
setter for date - sets ISO 8601 Formatted Timestamp: yyyy-MM-dd'T'HH:mm:ssZ
- setDate(int, String) - Method in class org.apache.ctakes.ytex.uima.types.Date_Type
-
- setDateFrom(Date) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setDateTo(Date) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setDateValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
setter for dateValue - sets
- setDateValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
-
- setDay(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
setter for day - sets
- setDay(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- setDbSchema(String) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setDbType(String) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setDeathDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for deathDate - sets
- setDeathDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setDefaultCasViewName(String) - Method in class org.apache.ctakes.ytex.tools.docanalyzer.DBAnnotationViewerDialog
-
Sets the name of the CAS View that will be displayed first in
the annotation viewer.
- setDegree(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for degree - sets
- setDegree(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setDegree(int) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setDegree(Integer) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setDelegateKernel(Kernel) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- setDelegateKernel(Kernel) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NodeAttributeKernel
-
- setDelegateKernel(Kernel) - Method in class org.apache.ctakes.ytex.kernel.evaluator.NormKernel
-
- setDelegateKernel(Kernel) - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- setDelegateKernels(List<Kernel>) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ProductKernel
-
- setDelegateKernels(List<Kernel>) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SumKernel
-
- setDelimiter(String) - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Sets the value of the delimiter property.
- setDeltaFlag(LabDeltaFlag) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
setter for deltaFlag - sets
- setDeltaFlag(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- setDeltaFlag(LabDeltaFlagModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
setter for deltaFlag - sets
- setDeltaFlag(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- setDemographics(Demographics) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
setter for demographics - sets
- setDemographics(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- setDeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for deprel - sets
- setDeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setDepth(int) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- setDepth(short) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setDepthMax(short) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- setDescription(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimServiceBean
-
- setDescription(String) - Method in class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- setDialectClassName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setDigitAlignment(float) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Specify the horizontal alignment of the digits within the component.
- setDisambiguated(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for disambiguated - sets Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, then the OntologyConcept with disambiguated=true is the most likely sense
- setDisambiguated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for discoveryTechnique - sets
- setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for discoveryTechnique - sets
- setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setDiscoveryTechnique(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for discoveryTechnique - sets
- setDiscoveryTechnique(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setDistance(String) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setDividerLocation(double) - Method in class org.apache.ctakes.gui.component.PositionedSplitPane
- setDividerLocation(int) - Method in class org.apache.ctakes.gui.component.PositionedSplitPane
- setDocLengthMap(Map<Integer, Integer>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setDocResultInstanceImporter(DocumentResultInstanceImporter) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- setDocText(String) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setDocTimeRel(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for docTimeRel - sets
- setDocTimeRel(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setDocument(Document) - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- setDocument(String) - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- setDocument(Document) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setDocument(Document) - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- setDocumentAnnotationID(int) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setDocumentAnnotations(List<DocumentAnnotation>) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setDocumentClasses(Map<Integer, String>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setDocumentClasses(List<DocumentClass>) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setDocumentClassID(int) - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- setDocumentDate(Date) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setDocumentID(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
setter for documentID - sets
- setDocumentID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
-
- setDocumentID(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID
-
setter for documentID - sets
- setDocumentID(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
-
- setDocumentID(Integer) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setDocumentID(int) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setDocumentIdPrefix(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
setter for documentIdPrefix - sets
- setDocumentIdPrefix(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type
-
- setDocumentLocator(Locator) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
- setDocumentPath(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
setter for documentPath - sets
- setDocumentPath(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentPath_Type
-
- setDocumentSearchService(DocumentSearchService) - Method in class org.apache.ctakes.ytex.web.search.FullTextDocumentViewBean
-
- setDocumentSearchService(DocumentSearchService) - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- setDocumentSearchService(DocumentSearchService) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setDocumentStandard(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for documentStandard - sets
- setDocumentStandard(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setDocumentTitle(String) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setDocumentTypeName(String) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setDomain(String) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.extractors.FedaFeatureFunction
-
- setDosage(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for dosage - sets Dosage refers to how many of each drug the patient is taking.
- setDosage(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDosageBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for dosageBegin - sets
- setDosageBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDosageElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setDosageElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setDosageEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for dosageEnd - sets
- setDosageEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDriver(String) - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Sets the value of the driver property.
- setDrug(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
setter for drug - sets
- setDrug(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- setDrugChangeStatus(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for drugChangeStatus - sets Status refers to the whether the medication is currently being taken or not.
- setDrugChangeStatus(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDrugChangeStatusElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setDrugChangeStatusElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setDuration(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for duration - sets Duration refers to for how long the patient is expected to take the drug.
- setDuration(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setDuration(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setDuration(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for duration - sets
- setDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setDurationBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for durationBegin - sets
- setDurationBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setDurationElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setDurationElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setDurationEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for durationEnd - sets
- setDurationEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setEnabledFeatureIdSet(Set<String>) - Method in class org.apache.ctakes.assertion.stub.AssertionDecoderConfiguration
-
- setEncapsulator(String) - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Sets the value of the encapsulator property.
- setEnd(int) - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- setEnd(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
Set offset of end of this span within the larger text
- setEnd(int) - Method in class org.apache.ctakes.ytex.uima.annotators.MetaMapToCTakesAnnotator.NegSpan
-
- setEnd(int) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- setEnd(int) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
Set offset of end of this span within the larger text
- setEnd(Integer) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for endDate - sets
- setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setEndDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for endDate - sets
- setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setEndDate(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for endDate - sets
- setEndDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setEndDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setEndDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setEndLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection
-
- setEndOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Sets the end offset.
- setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setEndTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setEndTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for endTime - sets
- setEndTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setEntity(Entity) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
setter for entity - sets
- setEntity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
-
- setEvaluation(double) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- setEvaluationType(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setEvent(Event) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention
-
setter for event - sets
- setEvent(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
-
- setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for exacerbatingFactor - sets
- setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setExacerbatingFactor(ElementRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for exacerbatingFactor - sets
- setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setExacerbatingFactor(ComplicatesDisruptsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for exacerbatingFactor - sets
- setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setExacerbatingFactor(ComplicatesDisruptsTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for exacerbatingFactor - sets
- setExacerbatingFactor(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setExperiment(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setExperiment(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setExperiment(String) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setExportType(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
setter for externalId - sets
- setExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- setExternalId(int) - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- setF1(double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setFeats(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for feats - sets
- setFeats(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setFeature(TOP) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
setter for feature - sets
- setFeature(int, int) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
- setFeature(String) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- setFeatureEval(FeatureEvaluation) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- setFeatureEvaluationId(int) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setFeatureName(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- setFeatureParentChildId(int) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- setFeatureRankChild(FeatureRank) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- setFeatureRankId(int) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- setFeatureRankParent(FeatureRank) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureParentChild
-
- setFeatures(StringArray) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
setter for features - sets
- setFeatures(int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
indexed setter for features - sets an indexed value -
- setFeatures(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- setFeatures(int, int, String) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- setFeatureSetName(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setFieldInfoValue(Map<AbstractJdbcWriter.FieldInfo, Object>, AbstractJdbcWriter.FieldInfo, Object) - Static method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
This is a safety method to set values of fieldInfoMaps instead of doing a direct .put in the map.
- setFirstName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for firstName - sets
- setFirstName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setFirstNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for firstNameSoundex - sets
- setFirstNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setFn(int) - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- setFn(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setFocusText(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
setter for FocusText - sets
- setFocusText(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
- setFold(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setFold(int) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setFoldGenerator(FoldGenerator) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- setFoldId(int) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setFoldId(int) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setForm(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for form - sets Form refers to the physical appearance of the drug.
- setForm(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for form - sets
- setForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setFormat(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the format property.
- setFormBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for formBegin - sets
- setFormBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFormElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setFormElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setFormEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for formEnd - sets
- setFormEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFormMethod(int) - Method in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- setFp(int) - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- setFp(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setFrags(Collection<String>) - Method in class org.apache.ctakes.coreference.util.SvmVectorCreator
-
- setFrameSet(String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
setter for frameSet - sets
- setFrameSet(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
- setFrequency(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for frequency - sets Frequency refers to how often the patient needs to take the drug.
- setFrequency(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFrequencyBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for frequencyBegin - sets
- setFrequencyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFrequencyElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setFrequencyElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setFrequencyEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for frequencyEnd - sets
- setFrequencyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFrequencyUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for frequencyUnit - sets
- setFrequencyUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFrequencyUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setFrequencyUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setFs(FeatureStructure) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- setFstem(String) - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- setFuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for fuBegin - sets
- setFuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for fuEnd - sets
- setFuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setFword(String) - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- setFword(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- setGamma(double) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setGamma(Double) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setGender(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for gender - sets
- setGender(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setGeneralizeLeaf(boolean) - Method in class org.apache.ctakes.utils.tree.SimpleTree
-
- setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for generic - sets
- setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setGeneric(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for generic - sets
- setGeneric(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- SetGoldConfidence() - Constructor for class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience.SetGoldConfidence
-
- setHead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for head - sets
- setHead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setHeadIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for headIndex - sets The head index tracks the index into the word tokens which is the syntactic head of a phrase.
- setHeadIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for historyOf - sets
- setHistoryOf(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setHistoryOf(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for historyOf - sets
- setHistoryOf(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setI2B2Output(String) - Method in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- setId(int) - Method in class org.apache.ctakes.coreference.type.Markable
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.coreference.type.Markable_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for id - sets The token's position in the sentence.
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- setId(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for id - sets
- setId(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.List
-
setter for id - sets
- setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
-
- setId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
-
setter for id - sets
- setId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
- setIdfMap(Map<String, Integer>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
setter for index - sets The index of this node in the top node's list of terminals.
- setIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
- setIndex(Integer) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoFSAttribute
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
-
- setIndicated(boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
setter for indicated - sets
- setIndicated(int, boolean) - Method in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
-
- setInfoContentEvaluator(InfoContentEvaluator) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setInputDirectory(File) - Method in class org.mitre.medfacts.uima.RunZoner
-
- setInputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- setInputFiles(List<File>) - Method in class org.mitre.medfacts.uima.RunZoner
-
- setInstanceDataExporter(InstanceDataExporter) - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- setInstanceDataExporter(InstanceDataExporter) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- setInstanceId(long) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- setInstanceId(int) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- setInstanceId(long) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setInstanceId(long) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- setInstanceID(long) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setInstanceId1(long) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- setInstanceId2(long) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- setInstanceIDField(String) - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- setInstanceIDQuery(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setInstanceIds(Set<CrossValidationFoldInstance>) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setInstanceIds(SortedSet<Long>) - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- setInstanceKernel(Kernel) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setInstanceKey(String) - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- setInstanceNominalWords(Map<Integer, SortedMap<String, String>>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setInstanceNominalWords(Map<Long, SortedMap<String, String>>) - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- setInstanceNumericWords(Map<Integer, SortedMap<String, Double>>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setInstanceNumericWords(Map<Long, SortedMap<String, Double>>) - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- setInstanceQueryMappingInfo(QueryMappingInfo) - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- setInstanceTreeBuilder(InstanceTreeBuilder) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setIntakeMethod(String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation
-
setter for intakeMethod - sets Means by which the drug was taken.
- setIntakeMethod(int, String) - Method in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
-
- setIntrinsicIC(double) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptInfo
-
- setIntrinsicIC(boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.LinMetric
-
- setIntrinsicICMax(double) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- setIntrinsicInfoContent(double) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setIntrinsicInfoContentEvaluator(IntrinsicInfoContentEvaluator) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- setIntrinsicLcs(String) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setIntrinsicLcsIC(Double) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setIntrinsicLcsTerm(String) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setIrClass(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setIrClassId(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setIsInteger(boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- setIspref(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setItems(FSList) - Method in class org.apache.ctakes.typesystem.type.textspan.List
-
setter for items - sets
- setItems(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.List_Type
-
- setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.ConstraintConstructor
-
- setJcas(JCas) - Method in class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- setJdbc(JdbcType) - Method in class org.apache.ctakes.jdl.schema.xdl.ConnType
-
Sets the value of the jdbc property.
- setJxpath(String) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setKernel(Integer) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setKernelEvaluationDao(KernelEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setKernelEvaluationDao(KernelEvaluationDao) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- setKernelEvaluationDao(KernelEvaluationDao) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- setKernelEvaluationDao(KernelEvaluationDao) - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- setKernelEvaluationDao(KernelEvaluationDao) - Method in class org.apache.ctakes.ytex.weka.GramMatrixExporterImpl
-
Deprecated.
- setKernelEvaluationId(int) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setKernelEvaluationId(int) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.kernel.FoldGeneratorImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.R.RGramMatrixExporterImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.semil.SemiLFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- setKernelUtil(KernelUtil) - Method in class org.apache.ctakes.ytex.weka.WekaFormatterFactory
-
- setKey(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
setter for key - sets
- setKey(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
- setKey(String) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
setter for key - sets
- setKey(int, String) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- setKeyNameToLowerCase(boolean) - Method in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- setKeyValuePairs(FSArray) - Method in class org.apache.ctakes.ytex.uima.types.DocKey
-
setter for keyValuePairs - sets
- setKeyValuePairs(int, KeyValuePair) - Method in class org.apache.ctakes.ytex.uima.types.DocKey
-
indexed setter for keyValuePairs - sets an indexed value -
- setKeyValuePairs(int, int) - Method in class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
- setKeyValuePairs(int, int, int) - Method in class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
- setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Heading
-
setter for label - sets
- setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Heading_Type
-
- setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone
-
setter for label - sets
- setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Subzone_Type
-
- setLabel(String) - Method in class org.apache.ctakes.assertion.zoner.types.Zone
-
setter for label - sets
- setLabel(int, String) - Method in class org.apache.ctakes.assertion.zoner.types.Zone_Type
-
- setLabel(boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
setter for label - sets
- setLabel(int, boolean) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
- setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
setter for label - sets
- setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
- setLabel(boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair
-
setter for label - sets Is this pair coreferent?
- setLabel(int, boolean) - Method in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- setLabel(String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
setter for label - sets
- setLabel(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
-
- setLabel(String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
setter for label - sets
- setLabel(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setLabel(String) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setLabelText(JLabel, String, String) - Method in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- setLabelToClassMap(SortedMap<String, SortedSet<String>>) - Method in class org.apache.ctakes.ytex.kernel.InstanceData
-
- setLabelToInstanceMap(SortedMap<String, SortedMap<Integer, SortedMap<Integer, SortedMap<Boolean, SortedMap<Long, String>>>>>) - Method in class org.apache.ctakes.ytex.kernel.InstanceData
-
- setLabValue(LabValue) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
setter for labValue - sets
- setLabValue(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- setLabValue(ResultOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
setter for labValue - sets
- setLabValue(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- setLambda(double) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setLastName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for lastName - sets
- setLastName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setLastNameSoundex(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for lastNameSoundex - sets
- setLastNameSoundex(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setLat(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setLcs(String) - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- setLcsCache(Cache) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setLcsDist(Integer) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setLcsImputedType(String) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setLcsPathMap(Map<String, String>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setLcsPaths(List<LCSPath>) - Method in class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- setLeaf(boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for leaf - sets
- setLeaf(int, boolean) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setLeafCount(int) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- setLemma(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for lemma - sets
- setLemma(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setLemmaEntries(FSList) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
setter for lemmaEntries - sets
- setLemmaEntries(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- setLibsvmUtil(LibSVMUtil) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- setLimitToRegex(boolean) - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- setLine(int) - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- setLine(String) - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- setLogging(Level, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- setLui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setMapAnnoMappingInfo(Map<String, AnnoMappingInfo>) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setMapIndexWeight(Map<Integer, Double>) - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- setMaxSizeList(int) - Static method in class org.apache.ctakes.dictionary.lookup.ae.LookupParseUtilities
-
Set the maximum list size to be returned from a lucene index
- setMedicationAllergy(MedicationAllergyModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationAllergy - sets
- setMedicationAllergy(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationDosage - sets
- setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationDosage(MedicationDosage) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationDosage - sets
- setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationDosage(MedicationDosageModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationDosage - sets
- setMedicationDosage(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationDuration - sets
- setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationDuration(MedicationDuration) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationDuration - sets
- setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationDuration(MedicationDurationModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationDuration - sets
- setMedicationDuration(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationForm - sets
- setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationForm(MedicationForm) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationForm - sets
- setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationForm(MedicationFormModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationForm - sets
- setMedicationForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationFrequency - sets
- setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationFrequency(MedicationFrequency) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationFrequency - sets
- setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationFrequency(MedicationFrequencyModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationFrequency - sets
- setMedicationFrequency(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationRoute - sets
- setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationRoute(MedicationRoute) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationRoute - sets
- setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationRoute(MedicationRouteModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationRoute - sets
- setMedicationRoute(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationStatusChange - sets
- setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationStatusChange(MedicationStatusChange) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationStatusChange - sets
- setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationStatusChange(MedicationStatusChangeModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationStatusChange - sets
- setMedicationStatusChange(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for medicationStrength - sets
- setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setMedicationStrength(MedicationStrength) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for medicationStrength - sets
- setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setMedicationStrength(MedicationStrengthModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for medicationStrength - sets
- setMedicationStrength(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setMembers(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
setter for members - sets A super-type for relationships between multiple spans of text.
- setMembers(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
-
- setMention(IdentifiedAnnotation) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
setter for mention - sets
- setMention(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
- setMentions(FSArray) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for mentions - sets
- setMentions(int, IdentifiedAnnotation) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
indexed setter for mentions - sets an indexed value -
- setMentions(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setMentions(int, int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setMethod(ProcedureMethod) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for method - sets
- setMethod(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setMethod(ProcedureMethodModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for method - sets
- setMethod(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setMethodName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.MethodCachingInterceptor
-
- setMetricNames(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- setMetrics(List<ConceptSimilarityService.SimilarityMetricEnum>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setMetricSelectCorpusIC(String[]) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setMetricSelectIntrinsicIC(String[]) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setMetricSelectTaxonomy(String[]) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setMiddleName(String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics
-
setter for middleName - sets
- setMiddleName(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- setMinimumDisplayDigits(int) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Specify the mimimum number of digits used to calculate the preferred
width of the component.
- setMode(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- setModel(byte[]) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setMonth(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
setter for month - sets
- setMonth(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- setMu(double) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setName(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Sets the value of the name property.
- setName(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setName(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setNamedEntityRegexID(int) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setNameToFormatterMap(Map<String, SparseDataFormatterFactory>) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- setNameToParserMap(Map<String, ClassifierEvaluationParser>) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationImporter
-
- setNeedToRedispatch(boolean) - Method in class org.apache.ctakes.gui.component.DisablerPane
-
We only need to redispatch if we're not visible, but having full control
over this might prove handy.
- setNegationStatus(Boolean) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setNodeIndex(int) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setNodeQueryMappingInfos(List<QueryMappingInfo>) - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- setNodeTags(StringArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for nodeTags - sets
- setNodeTags(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
indexed setter for nodeTags - sets an indexed value -
- setNodeTags(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setNodeTags(int, int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setNodeType(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for nodeType - sets
- setNodeType(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setNodeType(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- setNodeType(String) - Method in class org.apache.ctakes.ytex.kernel.tree.NodeMappingInfo
-
- setNodeTypes(List<NodeMappingInfo>) - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- setNodeValue(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for nodeValue - sets
- setNodeValue(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setNominalValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
-
setter for nominalValue - sets
- setNominalValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
-
- setNominalWordValueMap(SortedMap<String, SortedSet<String>>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setNominalWordValueMap(SortedMap<String, SortedSet<String>>) - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- setNorm(Double) - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time
-
setter for normalizedForm - sets
- setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Time_Type
-
- setNormalizedForm(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
setter for normalizedForm - sets
- setNormalizedForm(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- setNormalizedForm(Attribute) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
setter for normalizedForm - sets
- setNormalizedForm(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
- setNormalizedLaplacian(boolean) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setNoteSubTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for noteSubTypeCode - sets
- setNoteSubTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setNoteTypeCode(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for noteTypeCode - sets
- setNoteTypeCode(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setNpv(double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
setter for number - sets
- setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
- setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
setter for number - sets
- setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
- setNumber(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
setter for number - sets
- setNumber(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
- setNumericValue(String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
-
setter for numericValue - sets
- setNumericValue(int, String) - Method in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
-
- setNumericWords(SortedSet<String>) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setNumericWords(SortedSet<String>) - Method in class org.apache.ctakes.ytex.kernel.SparseData
-
- setNumPosition(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Sets the position of a number inside a Token.
- setNumPosition(int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
setter for numPosition - sets
- setNumPosition(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- setNumType(int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken
-
setter for numType - sets
- setNumType(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
-
- setObjects(ArrayList<?>) - Static method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
-
- setOid(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for oid - sets
- setOid(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setOid(String) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setOntologyConcept(OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for ontologyConcept - sets
- setOntologyConcept(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setOntologyConceptArr(FSArray) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for ontologyConceptArr - sets
- setOntologyConceptArr(int, OntologyConcept) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
indexed setter for ontologyConceptArr - sets an indexed value -
- setOntologyConceptArr(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setOntologyConceptArr(int, int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setOptions(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setOrdinalInterpretation(DegreeOf) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
setter for ordinalInterpretation - sets
- setOrdinalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- setOrdinalInterpretation(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
setter for ordinalInterpretation - sets
- setOrdinalInterpretation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- setOriginalEntityExternalId(int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept
-
setter for originalEntityExternalId - sets
- setOriginalEntityExternalId(int, int) - Method in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- setOriginalText(FSArray) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for originalText - sets The covered text of the span or the disjoint spans that resulted in the creation of this
IdentifiedAnnotation.
- setOriginalText(int, TOP) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
indexed setter for originalText - sets an indexed value - The covered text of the span or the disjoint spans that resulted in the creation of this
IdentifiedAnnotation.
- setOriginalText(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setOriginalText(int, int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setOui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for oui - sets holds the rxnorm unique identifier for a given drug mention.
- setOui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setOutputDirectory(String) - Method in class org.apache.ctakes.core.cc.CuiCountFileWriter
-
- setOutputDirectory(String) - Method in class org.apache.ctakes.core.cc.pretty.html.HtmlTextWriter
-
- setOutputDirectory(String) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriter
-
- setOutputDirectory(String) - Method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriter
-
- setOutputDirectory(String) - Method in class org.apache.ctakes.core.cc.TextSpanWriter
-
- setOutputDirectory(File) - Method in class org.mitre.medfacts.uima.RunZoner
-
- setOutputFile(String) - Method in class org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus
-
- setOutputStream(OutputStream) - Method in class org.apache.ctakes.core.cc.XMISerializer
-
- setP1(TOP) - Method in class org.apache.ctakes.coreference.type.Pair
-
setter for p1 - sets
- setP1(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
-
- setP2(TOP) - Method in class org.apache.ctakes.coreference.type.Pair
-
setter for p2 - sets
- setP2(int, int) - Method in class org.apache.ctakes.coreference.type.Pair_Type
-
- setPageRankService(PageRankService) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setPairs(FSArray) - Method in class org.apache.ctakes.typesystem.type.util.Pairs
-
setter for pairs - sets
- setPairs(int, Pair) - Method in class org.apache.ctakes.typesystem.type.util.Pairs
-
indexed setter for pairs - sets an indexed value -
- setPairs(int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
- setPairs(int, int, int) - Method in class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
- setParam1(double) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setParam1(Double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setParam1(double) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setParam1(double) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setParam2(String) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setParam2(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setParam2(String) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureEvaluation
-
- setParam2(String) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluation
-
- setParameterHolder(ParameterHolder) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- setParameterHolder(ParameterHolder) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
-
Populate the list
- setParameterTable(JTable) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- setParameterValue(int, String...) - Method in class org.apache.ctakes.gui.pipeline.bit.user.DefaultUserBit
- setParameterValue(int, String...) - Method in interface org.apache.ctakes.gui.pipeline.bit.user.UserBit
-
- setParameterValues(String) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
- setParameterValues(String) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserParameterInfoPanel
-
- setParent(TreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
setter for parent - sets
- setParent(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- setParentAnnoBaseId(int) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.AnnoLink
-
- setParentAnnotationId(int) - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- setParentsArray(int[]) - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- setParentSectionId(String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for parentSectionId - sets The section in which the subsection was found.
- setParentSectionId(int, String) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setParentUimaTypeId(int) - Method in class org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
-
- setParticipatesIn(FSList) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
setter for participatesIn - sets
- setParticipatesIn(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- setPartOfSpeech(String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
setter for partOfSpeech - sets
- setPartOfSpeech(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- setPassword(String) - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Sets the value of the password property.
- setPatientID(long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
setter for patientID - sets
- setPatientID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- setPatientId(Integer) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setPattern(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the pattern property.
- setPattern(Pattern) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- setPdeprel(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for pdeprel - sets
- setPdeprel(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setPercentLabeled(double) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setPeriod(float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
-
setter for period - sets The periodic unit used, e.g day, month, hour, etc.
- setPeriod(int, float) - Method in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
-
- setPermanence(String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for permanence - sets
- setPermanence(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setPhead(ConllDependencyNode) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for phead - sets
- setPhead(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setPipeBitInfoList(JList<PipeBitInfo>) - Method in class org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoPanel
-
- setPipeBits(Collection<Class<?>>) - Method in class org.apache.ctakes.gui.pipeline.bit.available.AvailablesListModel
-
Populate the list
- setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for polarity - sets
- setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
setter for polarity - sets
- setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for polarity - sets
- setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setPolarity(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for polarity - sets
- setPolarity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setPostag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
setter for postag - sets
- setPostag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- setPosTag(String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
setter for posTag - sets
- setPosTag(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
- setPosTagger(PartOfSpeechTagger) - Method in class org.apache.ctakes.assertion.stub.AssertionDecoderConfiguration
-
- setPow(double) - Method in class org.apache.ctakes.ytex.kernel.evaluator.ConvolutionKernel
-
- setPow(int) - Method in class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- setPpv(double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setPredicate(Predicate) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
setter for predicate - sets
- setPredicate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
- setPredictedClassId(int) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- setPredictedClassId(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setPreferredText(String) - Method in class org.apache.ctakes.gui.dictionary.umls.Concept
-
- setPreferredText(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
setter for preferredText - sets preferredText is the preferred term.
- setPreferredText(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- setPreferredText(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment
-
setter for preferredText - sets preferredText is the normalized/resolved section name.
- setPreferredText(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
- setPreload(boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setPrepareScript(String) - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- setPrepareScriptStatementDelimiter(String) - Method in class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- setPrimaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setPrimaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setProbabilities(double[]) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- setProcedureDevice(ProcedureDevice) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for procedureDevice - sets
- setProcedureDevice(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setProcedureDevice(ProcedureDeviceModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for procedureDevice - sets
- setProcedureDevice(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setProperties(Properties) - Method in class org.apache.ctakes.jdl.common.PropertiesFile
-
- setProperties(EventProperties) - Method in class org.apache.ctakes.typesystem.type.refsem.Event
-
setter for properties - sets
- setProperties(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Event_Type
-
- setProviderID(LongArray) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
setter for providerID - sets
- setProviderID(int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
indexed setter for providerID - sets an indexed value -
- setProviderID(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- setProviderID(int, int, long) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- setPseSen(PSESentence) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
setter for pseSen - sets
- setPseSen(int, int) - Method in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- setQuery(String) - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- setQueryArgs(Map<String, Object>) - Method in class org.apache.ctakes.ytex.kernel.tree.QueryMappingInfo
-
- setRank(int) - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- setRankCutoff(Integer) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticSimKernel
-
- setReason(FSArray) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for reason - sets
- setReason(int, TOP) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
indexed setter for reason - sets an indexed value -
- setReason(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setReason(int, int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
setter for recordID - sets ID of record that this sentence belongs to.
- setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- setRecordID(String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
setter for recordID - sets Represents the document record id
- setRecordID(int, String) - Method in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
- setRecordTextBegin(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
setter for recordTextBegin - sets Begin offset of the sentence relative to the entire
record text.
- setRecordTextBegin(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- setRecordTextEnd(int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
setter for recordTextEnd - sets End offset of the sentence relative to the entire
record text.
- setRecordTextEnd(int, int) - Method in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- setReferenceRangeNarrative(LabReferenceRange) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab
-
setter for referenceRangeNarrative - sets
- setReferenceRangeNarrative(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- setReferenceRangeNarrative(LabReferenceRangeModifier) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
setter for referenceRangeNarrative - sets
- setReferenceRangeNarrative(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- setRegex(String) - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- setRegex(String) - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- setRel(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setRela(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setRelation(SemanticRoleRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
setter for relation - sets
- setRelation(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
- setRelations(FSList) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
setter for relations - sets
- setRelations(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
- setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setRelativeTemporalContext(TemporalRelation) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setRelativeTemporalContext(TemporalTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for relativeTemporalContext - sets
- setRelativeTemporalContext(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setResults(List<ClassifierEvaluationResult>) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResults
-
- setRole(String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
setter for role - sets
- setRole(int, String) - Method in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- setRoot(String) - Method in class org.apache.ctakes.ytex.kernel.model.ConceptGraph
-
- setRoute(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for route - sets Medication route refers to the way that a drug is introduced into the body.
- setRoute(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setRouteBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for routeBegin - sets
- setRouteBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setRouteElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setRouteElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setRouteEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for routeEnd - sets
- setRouteEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setRow(ArrayList<Double>, int) - Method in class org.apache.ctakes.coreference.treekernel.training.RowFillerThread
-
- setRui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setRule(String) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- setRun(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluation
-
- setRun(int) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setSab(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSab(String) - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- setSaui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSchema(Schema) - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- setSchema(String) - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- setScope(String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
setter for Scope - sets
- setScope(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
- setScopeParser(ScopeParser) - Method in class org.apache.ctakes.assertion.stub.AssertionDecoderConfiguration
-
- setScore(double) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
setter for score - sets Word Sense disambiguation: if this named entity is assigned multiple ontologyConcepts, the score represents how similar this sense is to surrounding senses (higher scores = more likely to be the correct sense)
- setScore(int, double) - Method in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- setScriptDirectory(String) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- setScui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSdui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSearchCUI(ConceptFirstWord) - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- setSearchCUI(ConceptFirstWord) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setSearchProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- setSearchProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- setSearchProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- setSearchProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.SearchConfigBean
-
- setSearchResultList(List<Map<String, Object>>) - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- setSearchResultList(List<DocumentSearchResult>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setSearchTerm(String) - Method in class org.apache.ctakes.ytex.web.search.FullTextSearchBean
-
- setSecondaryAssociatedCodeElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setSecondaryAssociatedCodeElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setSectionName(String) - Method in class org.apache.ctakes.core.util.DocumentSection
-
- setSegmentID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for segmentID - sets
- setSegmentID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setSegmentId(String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
setter for segmentId - sets
- setSegmentId(int, String) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
- setSegmentID(String) - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- setSegmentRegexID(int) - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- setSemanticSimRegistryBean(SemanticSimRegistryBean) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setSemanticSimRegistryBean(SemanticSimRegistryBean) - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- setSemanticSimServiceList(List<SemanticSimServiceBean>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimRegistryBean
-
- setSensitivity(double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setSentence(SESentence) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
setter for sentence - sets sentence containing side effect
- setSentence(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- setSentenceID(String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation
-
setter for sentenceID - sets
- setSentenceID(int, String) - Method in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
-
- setSentenceID(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for sentenceID - sets contains the sentence id of the sentence that contains the NE's text span
- setSentenceID(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setSentenceNumber(int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
setter for sentenceNumber - sets
- setSentenceNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
- setSentenceText(String) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- setSeq(BigInteger) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the seq property.
- setSeq(BigInteger) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Sets the value of the seq property.
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.kernel.dao.ClassifierEvaluationDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.uima.dao.DocumentDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.uima.dao.NamedEntityRegexDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.uima.dao.SegmentRegexDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.weka.DocumentResultInstanceImporter
-
- setSessionFactory(SessionFactory) - Method in class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- setSeverity(String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for severity - sets
- setSeverity(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setSeverity(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for severity - sets
- setSeverity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setSeverity(DegreeOfTextRelation) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for severity - sets
- setSeverity(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setSideEffect(IdentifiedAnnotation) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
setter for sideEffect - sets side effect mention in NamedEntity
- setSideEffect(int, int) - Method in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- setSimilarities(List<Double>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- setSimilarity(double) - Method in class org.apache.ctakes.ytex.kernel.model.KernelEvaluationInstance
-
- setSimilarityInfo(SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPairSimilarity
-
- setSimilarityList(List<SemanticSimBean.SimilarityEntry>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setSimilarityMap(Map<ConceptSimilarityService.SimilarityMetricEnum, Double>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setSimilarityMap(Map<ConceptSimilarityService.SimilarityMetricEnum, Double>) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean.SimilarityEntry
-
- setSimilarityMetricMap(Map<ConceptSimilarityService.SimilarityMetricEnum, SimilarityMetric>) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setSimInfo(SimilarityInfo) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- setSize(int) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setSkip(Boolean) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
Sets the value of the skip property.
- setSkip(BigInteger) - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Sets the value of the skip property.
- setSkipTrain(boolean) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- setSoftLabel(boolean) - Method in class org.apache.ctakes.ytex.kernel.model.SemiLClassifierEvaluation
-
- setSourceApplication(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceApplication - sets
- setSourceApplication(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceData(SourceData) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata
-
setter for sourceData - sets
- setSourceData(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- setSourceEncounterId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceEncounterId - sets
- setSourceEncounterId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceInstanceId(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceInstanceId - sets
- setSourceInstanceId(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceInstitution(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceInstitution - sets
- setSourceInstitution(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceOriginalDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceOriginalDate - sets
- setSourceOriginalDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceRevisionDate(String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceRevisionDate - sets
- setSourceRevisionDate(int, String) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSourceRevisionNbr(int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData
-
setter for sourceRevisionNbr - sets
- setSourceRevisionNbr(int, int) - Method in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- setSources(Collection<String>) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
-
- setSparseDataExporter(SparseDataExporter) - Method in class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- setSpecificity(double) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setSplitName(String) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFold
-
- setSql(String) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setSqlType(int) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setSrcXml(String) - Method in class org.apache.ctakes.jdl.data.xml.DomParser
-
- setSrcXml(String) - Method in class org.apache.ctakes.jdl.data.xml.SaxParser
-
- setSrl(int) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setStart(int) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
Set offset of start of this span within the larger text
- setStart(int) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- setStart(int) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
Set offset of start of this span within the larger text
- setStartDate(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for startDate - sets
- setStartDate(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication
-
setter for startDate - sets
- setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- setStartDate(Date) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
setter for startDate - sets
- setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- setStartDate(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
setter for startDate - sets
- setStartDate(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- setStartDateElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setStartDateElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setStartLine(int) - Method in class org.apache.ctakes.core.util.DocumentSection
-
- setStartOffset(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Sets the start offset.
- setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- setStartTime(Time) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- setStartTime(TimeMention) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
setter for startTime - sets
- setStartTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- setStatus(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for status - sets
- setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStatus(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for status - sets Status of 'possible', 'history of', or 'family history of'.
- setStatus(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setStemmedStr(String) - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- setStn(String) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setStopWordsList(HashSet<String>) - Method in class org.apache.ctakes.coreference.util.AttributeCalculator
-
- setStr(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setStrength(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for strength - sets
- setStrength(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStrengthBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for strengthBegin - sets
- setStrengthBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStrengthElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setStrengthElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setStrengthEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for strengthEnd - sets
- setStrengthEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStrengthUnit(String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for strengthUnit - sets
- setStrengthUnit(int, String) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setStrengthUnitElement(String, int, int) - Method in class org.apache.ctakes.drugner.DrugMention
-
- setStrengthUnitElement(String, int, int) - Method in interface org.apache.ctakes.drugner.DrugModel
-
- setStt(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSty(String) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setSuBegin(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for suBegin - sets
- setSuBegin(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setSubject(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for subject - sets
- setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setSubject(String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for subject - sets
- setSubject(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setSubSectionBodyBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for subSectionBodyBegin - sets Sub-section body begin offset.
- setSubSectionBodyBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setSubSectionBodyEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for subSectionBodyEnd - sets Sub-section body end offset.
- setSubSectionBodyEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setSubSectionHeaderBegin(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for subSectionHeaderBegin - sets Begin offset of subSection header
- setSubSectionHeaderBegin(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setSubSectionHeaderEnd(int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
setter for subSectionHeaderEnd - sets Ending offset of subsection header
- setSubSectionHeaderEnd(int, int) - Method in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- setSubsumerCount(int) - Method in class org.apache.ctakes.ytex.kernel.IntrinsicInfoContentEvaluatorImpl.IntrinsicICInfo
-
- setSuEnd(int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
setter for suEnd - sets
- setSuEnd(int, int) - Method in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- setSuggestion(String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
setter for suggestion - sets
- setSuggestion(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- setSui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setSupportVectors(Integer) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setSuppress(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setTable(String) - Method in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
Sets the value of the table property.
- setTable(String) - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Sets the value of the table property.
- setTableName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setTableName(String) - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- setTag(String) - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- setTargetClassId(int) - Method in class org.apache.ctakes.ytex.kernel.ClassifierEvaluationResult
-
- setTargetClassId(Integer) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierInstanceEvaluation
-
- setTargetClassName(String) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- setTargetTypeName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- setTask(String) - Method in class org.apache.ctakes.ytex.uima.model.DocumentClass
-
- setTerminals(FSArray) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
setter for terminals - sets Stores the terminal nodes of the parse tree.
- setTerminals(int, TerminalTreebankNode) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
indexed setter for terminals - sets an indexed value - Stores the terminal nodes of the parse tree.
- setTerminals(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- setTerminals(int, int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- setText(String) - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- setText(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- setText(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
- setText(String) - Method in class org.apache.ctakes.preprocessor.DocumentMetaData
-
- setText(String) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- setText(String) - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- setTfIdf(boolean) - Method in class org.apache.ctakes.ytex.kernel.BagOfWordsData
-
- setTime(Time) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
setter for time - sets
- setTime(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- setTimeClass(String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
setter for timeClass - sets DATE, DURATION, QUANTIFIER, PREPOSTEXP, etc.
- setTimeClass(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- setTn(int) - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- setTn(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setTokenIndex(int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
setter for tokenIndex - sets The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence.
- setTokenIndex(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
- setTokenizedStr(String) - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- setTokenNumber(int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
setter for tokenNumber - sets
- setTokenNumber(int, int) - Method in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- setTokenOffset(String) - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- setTokenOffset(int) - Method in class org.apache.ctakes.assertion.stub.LineAndTokenPosition
-
- setTp(int) - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
- setTp(int) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setTrain(boolean) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser.InstanceClassInfo
-
- setTrain(boolean) - Method in class org.apache.ctakes.ytex.kernel.model.CrossValidationFoldInstance
-
- setTrainFileToDomain(Map<String, String>) - Method in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.kernel.KernelUtilImpl
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMGramMatrixExporterImpl
-
- setTransactionManager(PlatformTransactionManager) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setTree(String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
setter for tree - sets
- setTree(int, String) - Method in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
- setTreebankParse(String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
setter for treebankParse - sets A bracketed sentence string representing the parse tree.
- setTreebankParse(int, String) - Method in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- setTreeMappingInfo(TreeMappingInfo) - Method in class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl
-
- setTs(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setTty(String) - Method in class org.apache.ctakes.ytex.umls.model.MRCONSO
-
- setTui(String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
setter for tui - sets
- setTui(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- setTui(String) - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- setTxTemplateNew(TransactionTemplate) - Method in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- setType(String) - Method in class org.apache.ctakes.assertion.stub.ApiConcept
-
- setType(byte) - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Sets the type of the token.
- setType(String) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Sets the type name of this annotation.
- setType(String) - Method in class org.apache.ctakes.ytex.kernel.model.ClassifierEvaluationIRStat
-
- setType(String) - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- setTypeID(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for typeID - sets The type of named entity (e.g.
- setTypeID(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setUI(ToolTipUI) - Method in class org.apache.ctakes.gui.component.SmoothToolTip
-
- setUimaType(UimaType) - Method in class org.apache.ctakes.ytex.uima.model.DocumentAnnotation
-
- setUimaTypeId(int) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setUimaTypeID(int) - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- setUimaTypeIdColumnName(String) - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- setUimaTypeName(String) - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- setUmlsDao(UMLSDao) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- setUmlsFirstWordService(ConceptSearchService) - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- setUmlsFirstWordService(ConceptSearchService) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element
-
setter for uncertainty - sets
- setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation
-
setter for uncertainty - sets
- setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- setUncertainty(int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
setter for uncertainty - sets
- setUncertainty(int, int) - Method in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
setter for unit - sets
- setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
- setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
setter for unit - sets The periodic unit used, e.g day, month, hour, etc.
- setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
- setUnit(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
setter for unit - sets the unit of measurement
- setUnit(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
- SetupAuiFirstWord - Class in org.apache.ctakes.ytex.tools
-
setup umls_aui_fword table
- SetupAuiFirstWord() - Constructor for class org.apache.ctakes.ytex.tools.SetupAuiFirstWord
-
Initialize tokenizer using the hyphen map from
"tokenizer/hyphenated.txt".
- setupAuiFirstWord() - Method in class org.apache.ctakes.ytex.tools.SetupAuiFirstWord
-
- setUpdateFont(boolean) - Method in class org.apache.ctakes.gui.component.TextLineNumber
-
Set the update font property.
- setUrl(String) - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Sets the value of the url property.
- setUserBitList(JList<UserBit>) - Method in class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- setUsername(String) - Method in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
Sets the value of the username property.
- setValue(String) - Method in class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Course_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
setter for value - sets Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
-
- setValue(String) - Method in class org.apache.ctakes.typesystem.type.util.Pair
-
setter for value - sets
- setValue(int, String) - Method in class org.apache.ctakes.typesystem.type.util.Pair_Type
-
- setValue(Map<String, Serializable>) - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- setValueAt(Object, int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
- setValueAt(Object, int, int) - Method in class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
- setValueAt(Object, int, int) - Method in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterTableModel
- setValueLong(long) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
setter for valueLong - sets
- setValueLong(int, long) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- SetValuePostLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
-
A filter that uses a value to filter against a MetaDataHit.
- SetValuePostLookupFilterImpl(String, int, int, boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.SetValuePostLookupFilterImpl
-
- setValues(Set<String>) - Method in class org.apache.ctakes.ytex.kernel.tree.NodeMappingInfo
-
- setValues(PreparedStatement, int, T) - Method in interface org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl.ChunkPreparedStatementSetter
-
- setValueString(String) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
setter for valueString - sets
- setValueString(int, String) - Method in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- setVcdim(Double) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setVisible(boolean) - Method in class org.apache.ctakes.gui.component.DisablerPane
-
Blocks input if visible
- setWeight(String) - Method in class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- setWordTokenLen(int) - Method in class org.apache.ctakes.core.nlp.tokenizer.ContractionResult
-
- setWriter(Writer) - Method in class org.apache.ctakes.core.cc.XMISerializer
-
- setXleaf(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Sets the value of the xleaf property.
- setXml(LoadType.Xml) - Method in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
Sets the value of the xml property.
- setXpath(String) - Method in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
Sets the value of the xpath property.
- setXroot(String) - Method in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
Sets the value of the xroot property.
- setYear(String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date
-
setter for year - sets
- setYear(int, String) - Method in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.ConceptSearchServiceImpl
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchServiceImpl
-
- setYtexProperties(Properties) - Method in class org.apache.ctakes.ytex.web.search.DocumentViewBean
-
- SEUtil - Class in org.apache.ctakes.sideeffect.util
-
Utility methods used in the project
- SEUtil() - Constructor for class org.apache.ctakes.sideeffect.util.SEUtil
-
- Severity - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
-
Never called.
- Severity(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
-
Internal - constructor used by generator
- Severity(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity
-
- Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- Severity_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Severity_Type
-
initialize variables to correspond with Cas Type and Features
- SeverityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
Never called.
- SeverityModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
Internal - constructor used by generator
- SeverityModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
- SeverityModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
- SeverityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An explicitly-mentioned indication of the seriousness of a condition.
- SeverityModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type
-
initialize variables to correspond with Cas Type and Features
- SGTFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory.SGTFormatter
-
- SGTFormatterFactory - Class in org.apache.ctakes.ytex.svmlight
-
For each scope, create a data.txt file.
- SGTFormatterFactory() - Constructor for class org.apache.ctakes.ytex.svmlight.SGTFormatterFactory
-
- SGTFormatterFactory.SGTFormatter - Class in org.apache.ctakes.ytex.svmlight
-
- shallowCopy() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Clones this object, its attributes, and reference keys.
- SHAMPOO - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- shareAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- shareDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- shareTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- shareTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- SHARP_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_I2B2_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_I2B2_MIPACQ_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_I2B2_MIPACQ_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_I2B2_MIPACQ_NEGEX_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_I2B2_MIPACQ_NEGEX_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_I2B2_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_I2B2_NEGEX_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_I2B2_NEGEX_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_MIPACQ_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_MIPACQ_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_MIPACQ_NEGEX_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_MIPACQ_NEGEX_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_NEGEX_FEDA - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- SHARP_NEGEX_MODEL - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_SEED_CORPUS - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- SHARP_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTests
-
- SHARP_TEST - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTests
-
- SHARP_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityCotrainingTrain
-
- SHARP_TRAIN - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- sharpAllXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- SharpCorpusSplit - Class in org.apache.ctakes.assertion.pipelines
-
- SharpCorpusSplit() - Constructor for class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
-
- SharpCorpusSplit.Subcorpus - Enum in org.apache.ctakes.assertion.pipelines
-
- sharpDevXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- SHARPKnowtatorXMLDefaults - Class in org.apache.ctakes.core.util
-
A helper class that centralizes methods to assign all the
default values from the SHARP corpus annotation guidelines.
- SHARPKnowtatorXMLDefaults() - Constructor for class org.apache.ctakes.core.util.SHARPKnowtatorXMLDefaults
-
- SHARPKnowtatorXMLReader - Class in org.apache.ctakes.core.ae
-
- SHARPKnowtatorXMLReader() - Constructor for class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader
-
- sharpRelationsAll - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- sharpRelationsHighPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- sharpRelationsLowPriority - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- sharpRelationsSelected - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- sharpTestXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- sharpTrainXmlPath - Static variable in class org.apache.ctakes.relationextractor.data.Constants
-
- SHARPXMI - Class in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI() - Constructor for class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- SHARPXMI.CopyDocumentTextToGoldView - Class in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI.DocumentIDAnnotator - Class in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI.EvaluateOn - Enum in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI.Evaluation_ImplBase - Class in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI.EvaluationOptions - Interface in org.apache.ctakes.relationextractor.eval
-
- SHARPXMI.Options - Interface in org.apache.ctakes.relationextractor.eval
-
- shortType() - Method in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Returns a short description of this XcasAnnotation's type,
specifically, the last segment as separated by dots.
- shouldParseSegment(String) - Static method in class org.apache.ctakes.core.ae.RegexSectionizer
-
Normally I would put this in a singleton but I'm not sure that a singleton will work well with/as uima ae
- SideEffectAnnotation - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- SideEffectAnnotation() - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
Never called.
- SideEffectAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
Internal - constructor used by generator
- SideEffectAnnotation(JCas) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
- SideEffectAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
- SideEffectAnnotation_Type - Class in org.apache.ctakes.sideeffect.type
-
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- SideEffectAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- SideEffectAnnotator - Class in org.apache.ctakes.sideeffect.ae
-
Rule-based side effect extraction.
- SideEffectAnnotator() - Constructor for class org.apache.ctakes.sideeffect.ae.SideEffectAnnotator
-
- SideEffectCasConsumer - Class in org.apache.ctakes.sideeffect.cc
-
- SideEffectCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectCasConsumer
-
- SideEffectSentenceCasConsumer - Class in org.apache.ctakes.sideeffect.cc
-
- SideEffectSentenceCasConsumer() - Constructor for class org.apache.ctakes.sideeffect.cc.SideEffectSentenceCasConsumer
-
- SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom() - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
Never called.
- SignSymptom(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
Internal - constructor used by generator
- SignSymptom(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
- SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
This is an Event from the UMLS semantic group of Sign or Symtom.
- SignSymptom_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
initialize variables to correspond with Cas Type and Features
- SignSymptomMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
Never called.
- SignSymptomMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
Internal - constructor used by generator
- SignSymptomMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
- SignSymptomMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
- SignSymptomMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string that refers to a (SignSymptom) Event.
- SignSymptomMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
initialize variables to correspond with Cas Type and Features
- sim(String, String, ConceptGraph, int, double, double) - Method in interface org.apache.ctakes.ytex.kernel.pagerank.PageRankService
-
- sim(String, String, ConceptGraph, int, double, double) - Method in class org.apache.ctakes.ytex.kernel.pagerank.PageRankServiceImpl
-
- similarities(String, ConceptPair[], String[], boolean) - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityWebService
-
compute similarity for a list of concept pairs
- similarities(String, ConceptPair[], String[], boolean) - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- similarity(List<ConceptSimilarityService.SimilarityMetricEnum>, String, String, Map<String, Double>, boolean) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
compute similarity for a pair of concepts
- similarity(List<ConceptPair>, List<ConceptSimilarityService.SimilarityMetricEnum>, Map<String, Double>, boolean) - Method in interface org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService
-
compute similarity for a list of concept pairs
- similarity(List<ConceptPair>, List<ConceptSimilarityService.SimilarityMetricEnum>, Map<String, Double>, boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- similarity(List<ConceptSimilarityService.SimilarityMetricEnum>, String, String, Map<String, Double>, boolean) - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.IntrinsicLCHMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.IntrinsicPathMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.IntrinsicRadaMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.JaccardMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.LCHMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.LinMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.PageRankMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.PathMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.RadaMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in interface org.apache.ctakes.ytex.kernel.metric.SimilarityMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.SokalSneathMetric
-
- similarity(String, String, Map<String, Double>, SimilarityInfo) - Method in class org.apache.ctakes.ytex.kernel.metric.WuPalmerMetric
-
- similarity(String, String, String, String, String) - Method in interface org.apache.ctakes.ytex.ws.ConceptSimilarityRestService
-
- similarity(String, String, String, String, String) - Method in class org.apache.ctakes.ytex.ws.ConceptSimilarityWebServiceImpl
-
- SimilarityEntry() - Constructor for class org.apache.ctakes.ytex.web.search.SemanticSimBean.SimilarityEntry
-
- SimilarityInfo - Class in org.apache.ctakes.ytex.kernel.metric
-
Data structure to hold information on the lcs's, paths, and final selected
LCS for a similarity measure.
- SimilarityInfo() - Constructor for class org.apache.ctakes.ytex.kernel.metric.SimilarityInfo
-
- SimilarityMetric - Interface in org.apache.ctakes.ytex.kernel.metric
-
- simListen(ActionEvent) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
handle submit
- simMultiListen(ActionEvent) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
- SIMPLE_SEGMENT - Static variable in class org.apache.ctakes.core.ae.CDASegmentAnnotator
-
- SIMPLE_SEGMENTER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- simpleJdbcTemplate - Variable in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- simpleJdbcTemplate - Variable in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- simpleJdbcTemplate - Variable in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- SimpleSegmentAnnotator - Class in org.apache.ctakes.core.ae
-
Creates a single segment annotation that spans the entire document.
- SimpleSegmentAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentAnnotator
-
- SimpleSegmentWithTagsAnnotator - Class in org.apache.ctakes.core.ae
-
Creates a single segment annotation that spans the entire document.
- SimpleSegmentWithTagsAnnotator() - Constructor for class org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator
-
- SimpleTree - Class in org.apache.ctakes.utils.tree
-
- SimpleTree(String) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree
-
- SimpleTree(String, SimpleTree) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree
-
- SimpleTree(String, SimpleTree, boolean) - Constructor for class org.apache.ctakes.utils.tree.SimpleTree
-
- simplifyGCG(SimpleTree) - Static method in class org.apache.ctakes.temporal.ae.feature.TemporalPETFlatExtractor
-
- simplifyGCG(SimpleTree) - Static method in class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPETExtractor
-
- SimServiceInfo - Class in org.apache.ctakes.ytex.ws
-
- SimServiceInfo() - Constructor for class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- SimServiceInfo(String, String) - Constructor for class org.apache.ctakes.ytex.ws.SimServiceInfo
-
- simSvc - Variable in class org.apache.ctakes.ytex.kernel.metric.BaseSimilarityMetric
-
- SimSvcContextHolder - Class in org.apache.ctakes.ytex.kernel
-
- SimSvcContextHolder() - Constructor for class org.apache.ctakes.ytex.kernel.SimSvcContextHolder
-
- SingleDocumentProcessor - Class in org.apache.ctakes.assertion.stub
-
- SingleDocumentProcessor() - Constructor for class org.apache.ctakes.assertion.stub.SingleDocumentProcessor
-
- SingleDocumentProcessorCtakes - Class in org.apache.ctakes.assertion.medfacts.i2b2.api
-
- SingleDocumentProcessorCtakes() - Constructor for class org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes
-
- Singleton - Class in org.apache.ctakes.jdl.common
-
Singleton example.
- size() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- size() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- size() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- size() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- size() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- size() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- size() - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- size() - Method in class org.apache.ctakes.utils.distsem.WordVector
-
- size() - Method in class org.apache.ctakes.utils.struct.CounterTreeMap
-
- skip - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnCsvLoadType
-
- skip - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- skipTest - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- skipTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- skipTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- skipTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- skipTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- skipWrite - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- skipWrite - Variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- skipWrite - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- skipWrite - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- skipWrite - Variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- skipWrite - Variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- skipWrite - Variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- SliceEvaluator(Map<Long, Node>, int, int, boolean) - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.CorpusKernelEvaluatorImpl.SliceEvaluator
-
- SmokerNamedEntityAnnotation - Class in org.apache.ctakes.smokingstatus.type
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- SmokerNamedEntityAnnotation() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
Never called.
- SmokerNamedEntityAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
Internal - constructor used by generator
- SmokerNamedEntityAnnotation(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
- SmokerNamedEntityAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
- SmokerNamedEntityAnnotation_Type - Class in org.apache.ctakes.smokingstatus.type
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- SmokerNamedEntityAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- SmokerNamedEntityLookupConsumerImpl - Class in org.apache.ctakes.smokingstatus.lookup.ae
-
copied from edu.may.bmi.uima.lookup.ae.NamedEntityLookupConsumerImpl in the "Dictionary Lookup" project
to use "SmokerNamedEntityAnnotation" instead of NamedEntityAnnotation
- SmokerNamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.smokingstatus.lookup.ae.SmokerNamedEntityLookupConsumerImpl
-
- SmokingDocumentClassification - Class in org.apache.ctakes.smokingstatus.type
-
Represents classification related to the document
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- SmokingDocumentClassification() - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
Never called.
- SmokingDocumentClassification(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
Internal - constructor used by generator
- SmokingDocumentClassification(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
- SmokingDocumentClassification(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
- SmokingDocumentClassification_Type - Class in org.apache.ctakes.smokingstatus.type
-
Represents classification related to the document
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- SmokingDocumentClassification_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
initialize variables to correspond with Cas Type and Features
- smoothingCount - Variable in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- smoothingCount - Variable in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- SmoothTipList<T> - Class in org.apache.ctakes.gui.component
-
- SmoothTipList(ListModel<T>) - Constructor for class org.apache.ctakes.gui.component.SmoothTipList
-
- SmoothTipTable - Class in org.apache.ctakes.gui.component
-
- SmoothTipTable(TableModel) - Constructor for class org.apache.ctakes.gui.component.SmoothTipTable
-
- SmoothToolTip - Class in org.apache.ctakes.gui.component
-
- SmoothToolTip() - Constructor for class org.apache.ctakes.gui.component.SmoothToolTip
-
- smoteNumOfNeighbors - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- smoteNumOfNeighbors - Variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- SMOTEplus - Class in org.apache.ctakes.temporal.utils
-
A simple implementation of SMOTE algorithm.
- SMOTEplus(int) - Constructor for class org.apache.ctakes.temporal.utils.SMOTEplus
-
- SOAP - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- SoftMaxUtil - Class in org.apache.ctakes.temporal.utils
-
- SoftMaxUtil() - Constructor for class org.apache.ctakes.temporal.utils.SoftMaxUtil
-
- SokalSneathMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
Sokal and Sneath metric as in eqn 18 from
http://dx.doi.org/10.1016/j.jbi.2011.03.013
- SokalSneathMetric(ConceptSimilarityService) - Constructor for class org.apache.ctakes.ytex.kernel.metric.SokalSneathMetric
-
- SOLUTION - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- soonMatch(String, String) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- sort(Markable, LinkedList<Markable>, JCas) - Static method in class org.apache.ctakes.coreference.util.HobbsTreeNavigator
-
- SortedSetUserType - Class in org.apache.ctakes.ytex.kernel.dao
-
- SortedSetUserType() - Constructor for class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- sortFeatureRankList(List<FeatureRank>, Comparator<FeatureRank>) - Static method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
sort the features, set the rank correspondingly.
- SourceData - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData() - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
-
Never called.
- SourceData(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
-
Internal - constructor used by generator
- SourceData(JCas) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData
-
- SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData_Type - Class in org.apache.ctakes.typesystem.type.structured
-
Information about the caregiving setting for the clinical document.
- SourceData_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
initialize variables to correspond with Cas Type and Features
- SourceMetadataUtil - Class in org.apache.ctakes.core.util
-
Utility class with convenience methods for a few commonly-used JCas Metadata types that are begged of the source
- SourceTableModel - Class in org.apache.ctakes.gui.dictionary.umls
-
- SourceTableModel() - Constructor for class org.apache.ctakes.gui.dictionary.umls.SourceTableModel
-
- Span - Class in org.apache.ctakes.assertion.cr
-
Represents span of a named entity
- Span(int, int) - Constructor for class org.apache.ctakes.assertion.cr.Span
-
- Span - Class in org.apache.ctakes.coreference.eval.helpers
-
- Span() - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
-
- Span(int[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
-
- Span(String) - Constructor for class org.apache.ctakes.coreference.eval.helpers.Span
-
- span - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData
-
- Span - Class in org.apache.ctakes.relationextractor.knowtator
-
Represents span of a named entity
- Span(int, int) - Constructor for class org.apache.ctakes.relationextractor.knowtator.Span
-
- SPAN_END_LABEL - Static variable in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
- SPAN_START_LABEL - Static variable in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
- SpanAlignment - Class in org.apache.ctakes.coreference.eval.helpers
-
- SpanAlignment(Span[], Span[]) - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanAlignment
-
- SpannedRareWordTerm - Class in org.apache.ctakes.dictionary.lookup2.term
-
A
RareWordTerm tied to a text span
Author: SPF
Affiliation: CHIP-NLP
Date: 11/18/13
- SpannedRareWordTerm(RareWordTerm, int, int) - Constructor for class org.apache.ctakes.dictionary.lookup2.term.SpannedRareWordTerm
-
- SpannedRareWordTerm(RareWordTerm, TextSpan) - Constructor for class org.apache.ctakes.dictionary.lookup2.term.SpannedRareWordTerm
-
- spannedText - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The text spanned by this annnotation (null if not associated with a span of text).
- SpanOffsetComparator - Class in org.apache.ctakes.coreference.eval.helpers
-
- SpanOffsetComparator() - Constructor for class org.apache.ctakes.coreference.eval.helpers.SpanOffsetComparator
-
- spans - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The character offsets of this annotation (empty if not associated with a span of text).
- SparseData - Class in org.apache.ctakes.ytex.kernel
-
Data structure populated by SparseDataExporter that has all the instance
attributes needed for exporting to various formats.
- SparseData() - Constructor for class org.apache.ctakes.ytex.kernel.SparseData
-
- SparseDataExporter - Interface in org.apache.ctakes.ytex.kernel
-
- SparseDataExporter.ScopeEnum - Enum in org.apache.ctakes.ytex.kernel
-
- SparseDataExporterImpl - Class in org.apache.ctakes.ytex.kernel
-
- SparseDataExporterImpl() - Constructor for class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- SparseDataFormatter - Interface in org.apache.ctakes.ytex.kernel
-
stateful class called by the sparseDataExporter to export sparse data in a
specific format.
- SparseDataFormatterFactory - Interface in org.apache.ctakes.ytex.kernel
-
- SparseMatrixDataFormatter(InstanceDataExporter, KernelUtil) - Constructor for class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory.SparseMatrixDataFormatter
-
- SparseMatrixFormatterFactory - Class in org.apache.ctakes.ytex.sparsematrix
-
export sparse data matrix to data.txt.
- SparseMatrixFormatterFactory() - Constructor for class org.apache.ctakes.ytex.sparsematrix.SparseMatrixFormatterFactory
-
- SparseMatrixFormatterFactory.SparseMatrixDataFormatter - Class in org.apache.ctakes.ytex.sparsematrix
-
- SpecialAnnotationRelationExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- SpecialAnnotationRelationExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.SpecialAnnotationRelationExtractor
-
- SPLIT - Static variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
Constant indicates a sentence split.
- split(CharSequence) - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- split() - Method in class org.apache.ctakes.relationextractor.data.Splitter
-
- SPLIT_PATTERN - Static variable in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
vng change split sentences on these patterns
- splitAtLineBreaksAndTrim(String) - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
Trim any leading or trailing whitespace.
- splitAtLineBreaksAndTrim(String) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
Trim any leading or trailing whitespace.
- splitAtPeriodAndTrim(Pattern, Pattern, Pattern) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
vng added
- splitSeed(File) - Static method in class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
-
- splitStratified(int) - Static method in class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
-
- splitStratified(File) - Static method in class org.apache.ctakes.assertion.pipelines.SharpCorpusSplit
-
- splitSubspans(List<SentenceSpan>, Pattern) - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
vng added
- Splitter - Class in org.apache.ctakes.relationextractor.data
-
Randomly split a set of files in a directory into three sets: train, dev, and test.
- Splitter(double, double) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter
-
Specify percentages of the split.
- Splitter(int, int, int) - Constructor for class org.apache.ctakes.relationextractor.data.Splitter
-
Specify the size of each set.
- SPRAY - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- sqlTypes() - Method in class org.apache.ctakes.ytex.kernel.dao.SortedSetUserType
-
- sqlTypes() - Method in class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- srcToDocument(String) - Static method in class org.apache.ctakes.jdl.data.xml.DomUtil
-
- srcToSchema(String) - Static method in class org.apache.ctakes.jdl.data.xml.SchemaUtil
-
- SRL_NAME - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- srlabeler - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- SRLFeatureExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- SRLFeatureExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SRLFeatureExtractor
-
- srlModelUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- srlPredUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- SRLRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- SRLRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.SRLRelationFeaturesExtractor
-
- srlRoleUri - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPSemanticRoleLabelerAE
-
- SRLUtility - Class in org.apache.ctakes.dependency.parser.util
-
- SRLUtility() - Constructor for class org.apache.ctakes.dependency.parser.util.SRLUtility
-
- StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency() - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
Never called.
- StanfordDependency(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
Internal - constructor used by generator
- StanfordDependency(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
- StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Stanford dependencies provide a representation of grammatical relations between words in a sentence.
- StanfordDependency_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type
-
initialize variables to correspond with Cas Type and Features
- start - Variable in class org.apache.ctakes.assertion.cr.Span
-
- START - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- start - Variable in class org.apache.ctakes.preprocessor.IntegerRange
-
- start - Variable in class org.apache.ctakes.relationextractor.knowtator.Span
-
- START_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- startDate - Variable in class org.apache.ctakes.drugner.DrugMention
-
If there is a specific date in the note associated with the drug mention,
the specific date.
- StartDateElement - Class in org.apache.ctakes.drugner.elements
-
- StartDateElement() - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement
-
- StartDateElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StartDateElement
-
- startDocument() - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- startElement(String, String, String, Attributes) - Method in class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
- StartFinishLogger - Class in org.apache.ctakes.core.ae
-
All Annotation Engines should be logger their start and finish.
- StartFinishLogger() - Constructor for class org.apache.ctakes.core.ae.StartFinishLogger
-
- startMatch(String, String) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- startMatch(String, String) - Static method in class org.apache.ctakes.coreference.util.TextMatch
-
- startOffset - Variable in class org.apache.ctakes.preprocessor.Annotation
-
- startRedirect() - Method in class org.apache.ctakes.gui.component.SystemOutPanel
-
Starts redirecting standard output (or error) from the console (or other) to this gui
- Stats - Class in org.apache.ctakes.relationextractor.data
-
Calculate relation frequencies in a data set that consists of XML files exported from Knowtator.
- Stats() - Constructor for class org.apache.ctakes.relationextractor.data.Stats
-
- stats - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- stats - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- StatusContextAnalyzer - Class in org.apache.ctakes.necontexts.status
-
- StatusContextAnalyzer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextAnalyzer
-
- StatusContextHitConsumer - Class in org.apache.ctakes.necontexts.status
-
- StatusContextHitConsumer() - Constructor for class org.apache.ctakes.necontexts.status.StatusContextHitConsumer
-
- StatusIndicator - Class in org.apache.ctakes.core.fsm.output
-
- StatusIndicator(int, int, int) - Constructor for class org.apache.ctakes.core.fsm.output.StatusIndicator
-
- StatusIndicatorFSM - Class in org.apache.ctakes.core.fsm.machine
-
Uses one or more finite state machines to detect indications of
family history of
history of
possible/probable/likely
- StatusIndicatorFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM
-
Constructor
- StatusIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
-
Uses one or more finite state machines to detect ???
- StatusIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.StatusIndicatorFSM
-
Constructor
- StemmedLookupAnnotationToJCasAdapter - Class in org.apache.ctakes.ytex.uima.lookup.ae
-
allow dictionary lookup with stemmed words
- StemmedLookupAnnotationToJCasAdapter(Annotation) - Constructor for class org.apache.ctakes.ytex.uima.lookup.ae.StemmedLookupAnnotationToJCasAdapter
-
- STOP - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- STOP_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- store(String, String) - Method in class org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel
-
Loads text from a file.
- storeChildConcepts(List<FeatureRank>, ImputedFeatureEvaluatorImpl.Parameters, String, int, ConceptGraph, boolean) - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
save the children of the 'top' parent concepts.
- storeKernel(KernelEvaluation, long, long, double) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- storeKernel(KernelEvaluation, long, long, double) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- storeKernelEval(KernelEvaluation) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
store the kernel evaluation if it doesn't exist, else return the existing
one
- storeKernelEval(KernelEvaluation) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- storeNorm(KernelEvaluation, long, double) - Method in interface org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDao
-
- storeNorm(KernelEvaluation, long, double) - Method in class org.apache.ctakes.ytex.kernel.dao.KernelEvaluationDaoImpl
-
- storeResults(File, Properties, SVMClassifierEvaluation) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
store the parsed classifier evaluation
- storeResults(File, Properties, SVMClassifierEvaluation) - Method in class org.apache.ctakes.ytex.svmlight.SVMLightParser
-
store semi supervised results.
- storeSemiSupervised(Properties, ClassifierEvaluation, BiMap<Integer, String>) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- strength - Variable in class org.apache.ctakes.drugner.DrugMention
-
- StrengthAnnotation - Class in org.apache.ctakes.drugner.type
-
Holds the value representing the unit of the drug dosage.
- StrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
-
Never called.
- StrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
-
Internal - constructor used by generator
- StrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
-
- StrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation
-
- StrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
Holds the value representing the unit of the drug dosage.
- StrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- StrengthCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a StrengthToken.
- StrengthCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition
-
- StrengthElement - Class in org.apache.ctakes.drugner.elements
-
- StrengthElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement
-
- StrengthElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthElement
-
- StrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect dosages in the given
input of tokens.
- StrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthFSM
-
Constructor
- StrengthToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- StrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthToken
-
- strengthUnit - Variable in class org.apache.ctakes.drugner.DrugMention
-
Span the drug form, if available.
- StrengthUnitAnnotation - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-drug-ner/target/jcasgen/typesystem.xml
- StrengthUnitAnnotation() - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
Never called.
- StrengthUnitAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
Internal - constructor used by generator
- StrengthUnitAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
- StrengthUnitAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
- StrengthUnitAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
- StrengthUnitAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- StrengthUnitCombinedCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a StrengthToken.
- StrengthUnitCombinedCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition
-
- StrengthUnitCombinedToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- StrengthUnitCombinedToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitCombinedToken
-
- StrengthUnitCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a StrengthToken.
- StrengthUnitCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition
-
- StrengthUnitElement - Class in org.apache.ctakes.drugner.elements
-
- StrengthUnitElement() - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement
-
- StrengthUnitElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.StrengthUnitElement
-
- StrengthUnitFSM - Class in org.apache.ctakes.drugner.fsm.machines.elements
-
Uses one or more finite state machines to detect dosages in the given
input of tokens.
- StrengthUnitFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.elements.StrengthUnitFSM
-
Constructor
- StrengthUnitToken - Class in org.apache.ctakes.drugner.fsm.output.elements
-
- StrengthUnitToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitToken
-
- STRING_ESCAPE - Static variable in interface org.apache.ctakes.ytex.sparsematrix.InstanceDataExporter
-
- STRING_TYPE - Static variable in interface org.apache.ctakes.dictionary.lookup.MetaDataHitConst
-
- StringArrayUserType - Class in org.apache.ctakes.ytex.kernel.dao
-
- StringArrayUserType() - Constructor for class org.apache.ctakes.ytex.kernel.dao.StringArrayUserType
-
- StringAttributeValue - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- StringAttributeValue() - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
Never called.
- StringAttributeValue(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
Internal - constructor used by generator
- StringAttributeValue(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
- StringAttributeValue(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
- StringAttributeValue_Type - Class in org.apache.ctakes.smokingstatus.type.libsvm
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- StringAttributeValue_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
-
initialize variables to correspond with Cas Type and Features
- StringHandling - Class in org.apache.ctakes.assertion.stub
-
- StringHandling() - Constructor for class org.apache.ctakes.assertion.stub.StringHandling
-
- StringIntegerMapResource - Interface in org.apache.ctakes.core.resource
-
Resource that defines a map between a String (KEY) and Integer.
- StringIntegerMapResourceImpl - Class in org.apache.ctakes.core.resource
-
Implementation for StringIntegerMapResource interface.
- StringIntegerMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringIntegerMapResourceImpl
-
- StringMapResource - Interface in org.apache.ctakes.core.resource
-
Resource that defines a map between a String (KEY) and Integer.
- StringMapResourceImpl - Class in org.apache.ctakes.core.resource
-
Implementation for StringIntegerMapResource interface.
- StringMapResourceImpl() - Constructor for class org.apache.ctakes.core.resource.StringMapResourceImpl
-
- StringMatchingFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- StringMatchingFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- StringPreLookupFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
-
- StringPreLookupFilterImpl(Set<String>) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.StringPreLookupFilterImpl
-
- stringSlots - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The string-valued annotation attributes
- StringsResource - Interface in org.apache.ctakes.core.resource
-
A Resource interface for getting an array of strings.
- StringTable - Class in org.apache.ctakes.dictionary.lookup.strtable
-
- StringTable(String[]) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTable
-
- StringTableDictionaryImpl - Class in org.apache.ctakes.dictionary.lookup.strtable
-
- StringTableDictionaryImpl(StringTable, String) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableDictionaryImpl
-
- StringTableFactory - Class in org.apache.ctakes.dictionary.lookup.strtable
-
- StringTableFactory() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableFactory
-
- StringTableRow - Class in org.apache.ctakes.dictionary.lookup.strtable
-
- StringTableRow() - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRow
-
- StringTableRowMetaDataHitImpl - Class in org.apache.ctakes.dictionary.lookup.strtable
-
- StringTableRowMetaDataHitImpl(StringTableRow) - Constructor for class org.apache.ctakes.dictionary.lookup.strtable.StringTableRowMetaDataHitImpl
-
- strToDocument(String) - Static method in class org.apache.ctakes.jdl.data.xml.DomUtil
-
- strToSchema(String) - Static method in class org.apache.ctakes.jdl.data.xml.SchemaUtil
-
- subcorpus - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- SUBCUTANEOUS - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- SubjectAttributeAnalysisEngine - Class in org.apache.ctakes.assertion.attributes
-
This class provides a basic subject attribute extraction technique based on dependency parses.
- SubjectAttributeAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine
-
- SubjectAttributeClassifier - Class in org.apache.ctakes.assertion.attributes.subject
-
- SubjectAttributeClassifier() - Constructor for class org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier
-
- SubjectCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- SubjectCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine
-
- SubjectFeaturesExtractor - Class in org.apache.ctakes.assertion.attributes.features
-
SubjectFeaturesExtractor
Ports the features and classification decisions of the first version (logic) of the subject tool
- SubjectFeaturesExtractor() - Constructor for class org.apache.ctakes.assertion.attributes.features.SubjectFeaturesExtractor
-
- SubjectModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
Never called.
- SubjectModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
Internal - constructor used by generator
- SubjectModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
- SubjectModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
- SubjectModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
The person the observation is on, i.e., a Person mention.
- SubjectModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
-
initialize variables to correspond with Cas Type and Features
- SubSectionAnnotation - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-drug-ner/target/jcasgen/typesystem.xml
- SubSectionAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
Never called.
- SubSectionAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
Internal - constructor used by generator
- SubSectionAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
- SubSectionAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
- SubSectionAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
Updated by JCasGen Mon Apr 24 21:42:43 EDT 2017
- SubSectionAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- SubSectionIndicator - Class in org.apache.ctakes.drugner.fsm.output.util
-
- SubSectionIndicator(int, int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator
-
- SubSectionIndicatorFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
-
Uses one or more finite state machines to detect sub-sections in the given input of
tokens.
- SubSectionIndicatorFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SubSectionIndicatorFSM
-
Constructor
- Subzone - Class in org.apache.ctakes.assertion.zoner.types
-
Updated by JCasGen Mon Apr 24 21:42:46 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-assertion-zoner/target/jcasgen/typesystem.xml
- Subzone() - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone
-
Never called.
- Subzone(int, TOP_Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone
-
Internal - constructor used by generator
- Subzone(JCas) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone
-
- Subzone(JCas, int, int) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone
-
- Subzone_Type - Class in org.apache.ctakes.assertion.zoner.types
-
Updated by JCasGen Mon Apr 24 21:42:46 EDT 2017
- Subzone_Type(JCas, Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Subzone_Type
-
initialize variables to correspond with Cas Type and Features
- succeed() - Method in class org.apache.ctakes.jdl.data.xml.Validation
-
- SUFFIX_IMPUTED - Static variable in interface org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator
-
- SUFFIX_IMPUTED_FILTERED - Static variable in interface org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator
-
- SUFFIX_PROP - Static variable in interface org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator
-
- SuffixFileFilter(String) - Constructor for class org.apache.ctakes.ytex.kernel.FileUtil.SuffixFileFilter
-
- SuffixFrequencyFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
-
Uses one or more finite state machines to detect frequency suffix data in the given
input of tokens.
- SuffixFrequencyFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixFrequencyFSM
-
Constructor
- SuffixFrequencyToken - Class in org.apache.ctakes.drugner.fsm.output.util
-
- SuffixFrequencyToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixFrequencyToken
-
- SuffixStrengthAnnotation - Class in org.apache.ctakes.drugner.type
-
The suffix portion of dosage strength determination for the Drug NER profile.
- SuffixStrengthAnnotation() - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
Never called.
- SuffixStrengthAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
Internal - constructor used by generator
- SuffixStrengthAnnotation(JCas) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
- SuffixStrengthAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
- SuffixStrengthAnnotation_Type - Class in org.apache.ctakes.drugner.type
-
The suffix portion of dosage strength determination for the Drug NER profile.
- SuffixStrengthAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- SuffixStrengthFSM - Class in org.apache.ctakes.drugner.fsm.machines.util
-
Uses one or more finite state machines to detect strength suffix information
adjoined to dosage data in the given input of tokens.
- SuffixStrengthFSM() - Constructor for class org.apache.ctakes.drugner.fsm.machines.util.SuffixStrengthFSM
-
Constructor
- SuffixStrengthToken - Class in org.apache.ctakes.drugner.fsm.output.util
-
- SuffixStrengthToken(int, int) - Constructor for class org.apache.ctakes.drugner.fsm.output.util.SuffixStrengthToken
-
- SUM - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.DrugChangeStatusToken
-
- SumContext - Class in org.apache.ctakes.core.cleartk
-
- SumContext(CleartkExtractor.Context...) - Constructor for class org.apache.ctakes.core.cleartk.SumContext
-
Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts
into a bag of features where all features have the same name.
- SumKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
apply all the delegate kernels to the objects, sum them up
- SumKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.SumKernel
-
- SUMMATION_STATUS - Static variable in class org.apache.ctakes.drugner.elements.DrugChangeStatusElement
-
- SUPPOSITORY - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- Surrounding() - Constructor for class org.apache.ctakes.coreference.extractors.ContinuousBag.Surrounding
-
- SurroundingExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- SurroundingExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.SurroundingExtractor
-
- SUSPEND_BUTTONS - Static variable in class org.apache.ctakes.gui.pipeline.bit.user.UserBitRenderer
-
- SVM_KERNELS - Static variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- SVMClassifierEvaluation - Class in org.apache.ctakes.ytex.kernel.model
-
- SVMClassifierEvaluation() - Constructor for class org.apache.ctakes.ytex.kernel.model.SVMClassifierEvaluation
-
- svmCost - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- svmGamma - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- svmKernel - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- svmKernelIndex - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- SVMLightFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory.SVMLightFormatter
-
- SVMLightFormatterFactory - Class in org.apache.ctakes.ytex.svmlight
-
export for svmlight.
- SVMLightFormatterFactory() - Constructor for class org.apache.ctakes.ytex.svmlight.SVMLightFormatterFactory
-
- SVMLightFormatterFactory.SVMLightFormatter - Class in org.apache.ctakes.ytex.svmlight
-
- SVMLightParser - Class in org.apache.ctakes.ytex.svmlight
-
same as libsvm with following changes:
parse output.txt - contains vcdim and number support vectors <
- SVMLightParser() - Constructor for class org.apache.ctakes.ytex.svmlight.SVMLightParser
-
- SVMLinDataFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory.SVMLinDataFormatter
-
- SvmlinEvaluationParser - Class in org.apache.ctakes.ytex.kernel
-
- SvmlinEvaluationParser() - Constructor for class org.apache.ctakes.ytex.kernel.SvmlinEvaluationParser
-
- SVMLinFormatterFactory - Class in org.apache.ctakes.ytex.kernel
-
for each train/test pair create the following files:
[prefix]class.txt - as in semil: instance id \t train/test flag \t target
class id
- SVMLinFormatterFactory() - Constructor for class org.apache.ctakes.ytex.kernel.SVMLinFormatterFactory
-
- SVMLinFormatterFactory.SVMLinDataFormatter - Class in org.apache.ctakes.ytex.kernel
-
- SvmUtils - Class in org.apache.ctakes.coreference.util
-
- SvmUtils() - Constructor for class org.apache.ctakes.coreference.util.SvmUtils
-
- SvmVectorCreator - Class in org.apache.ctakes.coreference.util
-
- SvmVectorCreator(HashSet<String>) - Constructor for class org.apache.ctakes.coreference.util.SvmVectorCreator
-
- SymbolToken - Interface in org.apache.ctakes.core.fsm.token
-
- SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
Never called.
- SymbolToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
Internal - constructor used by generator
- SymbolToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
- SymbolToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
- SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
- SymbolToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type
-
initialize variables to correspond with Cas Type and Features
- SymbolTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- SymbolTokenAdapter(SymbolToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter
-
- SymbolValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- SymbolValueCondition(char) - Constructor for class org.apache.ctakes.core.fsm.condition.SymbolValueCondition
-
- SymmetricPairCacheKeyGenerator - Class in org.apache.ctakes.ytex.kernel.evaluator
-
cache key for a method that takes 2 arguments, and is symmetric - the order
of the arguments doesn't matter.
- SymmetricPairCacheKeyGenerator() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.SymmetricPairCacheKeyGenerator
-
- SyntacticParentFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- SyntacticParentFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.SyntacticParentFeatureExtractor
-
- SyntaticSingleTreeExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
Given a focused annotation, get the whole sentence-level parse tree that cover this annotation.
- SyntaticSingleTreeExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.SyntaticSingleTreeExtractor
-
- SyntaxAttributeCalculator - Class in org.apache.ctakes.coreference.util
-
- SyntaxAttributeCalculator(JCas, Markable, Markable) - Constructor for class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- SyntaxAttributeCalculator(JCas, Markable, Markable, WikiIndex) - Constructor for class org.apache.ctakes.coreference.util.SyntaxAttributeCalculator
-
- syntheticInsts - Variable in class org.apache.ctakes.temporal.utils.SMOTEplus
-
- SYRINGE - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- SYRUP - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- SYSTEM_VIEW_NAME - Static variable in class org.apache.ctakes.temporal.duration.PreserveUMLSEventTimeRelationsInGold
-
- SystemOutPanel - Class in org.apache.ctakes.gui.component
-
A Text Component that will output text that would normally go to the console for standard output or standard error
- SystemOutPanel() - Constructor for class org.apache.ctakes.gui.component.SystemOutPanel
-
new text gui that will display standard output
- SystemOutPanel(boolean) - Constructor for class org.apache.ctakes.gui.component.SystemOutPanel
-
- systemViewName - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
T
- table - Variable in class org.apache.ctakes.jdl.schema.xdl.CsvLoadType
-
- table - Variable in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
- TableSqlInfo(Connection, AbstractJdbcWriter.TableInfo) - Constructor for class org.apache.ctakes.core.cc.AbstractJdbcWriter.TableSqlInfo
-
- TABLET - Static variable in class org.apache.ctakes.drugner.elements.FormElement
-
- TagDictionaryCreator - Class in org.apache.ctakes.postagger
-
From a Part of Speech (POS) corpus in OpenNLP format, create a tagDictionary
Outputs the dictionary to the specified file
- TagDictionaryCreator() - Constructor for class org.apache.ctakes.postagger.TagDictionaryCreator
-
- tail() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- targetRelationType - Static variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- targetType - Variable in class org.apache.ctakes.assertion.medfacts.CasIndexer
-
- TemplateFillerAnnotator - Class in org.apache.ctakes.template.filler.ae
-
- TemplateFillerAnnotator() - Constructor for class org.apache.ctakes.template.filler.ae.TemplateFillerAnnotator
-
- TemporalAttributeFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- TemporalAttributeFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TemporalAttributeFeatureExtractor
-
- TemporalAttributeForMixEventTimeExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- TemporalAttributeForMixEventTimeExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TemporalAttributeForMixEventTimeExtractor
-
- TemporalDurationExtractor() - Constructor for class org.apache.ctakes.temporal.duration.EventDurationDistribution.TemporalDurationExtractor
-
- TemporalEntityAnnotator_ImplBase - Class in org.apache.ctakes.temporal.ae
-
- TemporalEntityAnnotator_ImplBase() - Constructor for class org.apache.ctakes.temporal.ae.TemporalEntityAnnotator_ImplBase
-
- TemporalExtractionPipeline_ImplBase - Class in org.apache.ctakes.temporal.pipelines
-
- TemporalExtractionPipeline_ImplBase() - Constructor for class org.apache.ctakes.temporal.pipelines.TemporalExtractionPipeline_ImplBase
-
- TemporalExtractionPipeline_ImplBase.Options - Interface in org.apache.ctakes.temporal.pipelines
-
- TemporalFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- TemporalFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.TemporalFeatureExtractor
-
- TemporalFTExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
- TemporalFTExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalFTExtractor
-
- TemporalPathExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
- TemporalPathExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPathExtractor
-
- TemporalPETExtractor - Class in org.apache.ctakes.temporal.ae.feature.treekernel
-
- TemporalPETExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.treekernel.TemporalPETExtractor
-
- TemporalPETFlatExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- TemporalPETFlatExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TemporalPETFlatExtractor
-
- TemporalRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
Never called.
- TemporalRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
Internal - constructor used by generator
- TemporalRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
- TemporalRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
Based on ISO TimeML's TLINK.
- TemporalRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type
-
initialize variables to correspond with Cas Type and Features
- TemporalRelationExtractorAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TemporalRelationExtractorAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator
-
- TemporalRelationExtractorAnnotator.IdentifiedAnnotationPair - Class in org.apache.ctakes.temporal.ae
-
- TemporalRelationRuleAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TemporalRelationRuleAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TemporalRelationRuleAnnotator
-
- TemporalSequenceAnnotator_ImplBase - Class in org.apache.ctakes.temporal.ae
-
- TemporalSequenceAnnotator_ImplBase() - Constructor for class org.apache.ctakes.temporal.ae.TemporalSequenceAnnotator_ImplBase
-
- TemporalTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
Never called.
- TemporalTextRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
Internal - constructor used by generator
- TemporalTextRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
- TemporalTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A UMLS relation between clinical elements.
- TemporalTextRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type
-
initialize variables to correspond with Cas Type and Features
- TermConsumer - Interface in org.apache.ctakes.dictionary.lookup2.consumer
-
Stores terms in the cas
Author: SPF
Affiliation: CHIP-NLP
Date: 12/5/13
- TerminalTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode() - Constructor for class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
Never called.
- TerminalTreebankNode(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
Internal - constructor used by generator
- TerminalTreebankNode(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
- TerminalTreebankNode(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
- TerminalTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.
- TerminalTreebankNode_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
initialize variables to correspond with Cas Type and Features
- test(CollectionReader, File) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- TEST - Static variable in class org.apache.ctakes.assertion.stub.ConceptType
-
- test(HyphenTextModifierImpl, String) - Static method in class org.apache.ctakes.core.ci.HyphenTextModifierImpl
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience
-
- Test - Class in org.apache.ctakes.coreference.eval.helpers
-
- Test() - Constructor for class org.apache.ctakes.coreference.eval.helpers.Test
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- test(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- TEST_REMAINDERS - Static variable in class org.apache.ctakes.temporal.eval.THYMEData
-
- TestAttributeModels - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), run against the test directories
for that attribute, using models that are under the models-dir.
- TestAttributeModels() - Constructor for class org.apache.ctakes.assertion.train.TestAttributeModels
-
- testClassifier(AnalysisEngineDescription, String, String, String, String, String...) - Static method in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- testConfigParam(UimaContext, String, String, Object) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- testConfigParam(UimaContext, String, String, Object, Integer) - Static method in class org.apache.ctakes.utils.test.TestUtil
-
- TestCosineSimilarity - Class in org.apache.ctakes.utils.wiki
-
- TestCosineSimilarity() - Constructor for class org.apache.ctakes.utils.wiki.TestCosineSimilarity
-
- testDirectories - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- testDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- TestDriver - Class in org.apache.ctakes.preprocessor.test
-
- TestDriver() - Constructor for class org.apache.ctakes.preprocessor.test.TestDriver
-
- TESTLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter
-
- testMaxent() - Method in class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- testOnly - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- testOnTrain - Variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- testSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- TestUtil - Class in org.apache.ctakes.utils.test
-
- TestUtil() - Constructor for class org.apache.ctakes.utils.test.TestUtil
-
- TextLineNumber - Class in org.apache.ctakes.gui.component
-
- TextLineNumber(JTextComponent) - Constructor for class org.apache.ctakes.gui.component.TextLineNumber
-
Create a line number component for a text component.
- TextLineNumber(JTextComponent, int) - Constructor for class org.apache.ctakes.gui.component.TextLineNumber
-
Create a line number component for a text component.
- TextMatch - Class in org.apache.ctakes.coreference.util
-
- TextMatch() - Constructor for class org.apache.ctakes.coreference.util.TextMatch
-
- TextMentionElement - Class in org.apache.ctakes.drugner.elements
-
- TextMentionElement() - Constructor for class org.apache.ctakes.drugner.elements.TextMentionElement
-
- TextMentionElement(String, int, int) - Constructor for class org.apache.ctakes.drugner.elements.TextMentionElement
-
- TextModification - Class in org.apache.ctakes.core.ci
-
Value object class that describes a modification of document text.
- TextModification(int, int, int, int, String) - Constructor for class org.apache.ctakes.core.ci.TextModification
-
- TextModifier - Interface in org.apache.ctakes.core.ci
-
Defines a generic interface for modifying text.
- TextReader - Class in org.apache.ctakes.core.cr
-
UIMA CollectionReader that reads in Text from text files.
- TextReader() - Constructor for class org.apache.ctakes.core.cr.TextReader
-
- textRoot - Variable in class org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi.Options
-
- TextSetCondition - Class in org.apache.ctakes.core.fsm.condition
-
- TextSetCondition(Set<String>, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.TextSetCondition
-
- TextSpan - Interface in org.apache.ctakes.core.cc.pretty.textspan
-
- TextSpan - Interface in org.apache.ctakes.dictionary.lookup2.textspan
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/29/14
- textSpans - Variable in class org.apache.ctakes.preprocessor.SegmentMetaData
-
- TextSpanWriter - Class in org.apache.ctakes.core.cc
-
- TextSpanWriter() - Constructor for class org.apache.ctakes.core.cc.TextSpanWriter
-
- TextToken - Interface in org.apache.ctakes.core.fsm.token
-
- TextTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- TextTokenAdapter(Annotation) - Constructor for class org.apache.ctakes.core.fsm.adapters.TextTokenAdapter
-
- TextTokenizer - Class in org.apache.ctakes.gui.dictionary.util
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/16/14
- TextValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- TextValueCondition(String, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.TextValueCondition
-
- tf(int) - Method in class org.apache.ctakes.utils.wiki.ApproximateSimilarity
-
- ThreadDelegator - Interface in org.apache.ctakes.coreference.util
-
- threadDone(RowFillerThread) - Method in class org.apache.ctakes.coreference.treekernel.training.LinearKernelMatrixWriter
-
- threadDone(RowFillerThread) - Method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
-
- threadDone(RowFillerThread) - Method in interface org.apache.ctakes.coreference.util.ThreadDelegator
-
- ThreadedDictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae
-
Date: 12/18/12
- ThreadedDictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.ThreadedDictionaryLookupAnnotator
-
- ThreadedUmlsDictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae
-
UIMA annotator that identified entities based on lookup.
- ThreadedUmlsDictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.ThreadedUmlsDictionaryLookupAnnotator
-
- ThreadSafeLvg - Class in org.apache.ctakes.lvg.ae
-
Utilizes a singleton to access a single instance of the LvgAnnotator.
- ThreadSafeLvg() - Constructor for class org.apache.ctakes.lvg.ae.ThreadSafeLvg
-
- threadStarted() - Method in class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
-
- THYMEAnaforaXMLReader - Class in org.apache.ctakes.temporal.ae
-
- THYMEAnaforaXMLReader() - Constructor for class org.apache.ctakes.temporal.ae.THYMEAnaforaXMLReader
-
- THYMEData - Class in org.apache.ctakes.temporal.eval
-
A class for splitting the THYME data into appropriate sets for evaluation.
- THYMEData() - Constructor for class org.apache.ctakes.temporal.eval.THYMEData
-
- THYMEKnowtatorXMLReader - Class in org.apache.ctakes.temporal.ae
-
- THYMEKnowtatorXMLReader() - Constructor for class org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader
-
- THYMEQAAnaforaXMLReader - Class in org.apache.ctakes.temporal.ae
-
- THYMEQAAnaforaXMLReader() - Constructor for class org.apache.ctakes.temporal.ae.THYMEQAAnaforaXMLReader
-
- THYMETreebankReader - Class in org.apache.ctakes.temporal.ae
-
- THYMETreebankReader() - Constructor for class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- Time - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time() - Constructor for class org.apache.ctakes.typesystem.type.refsem.Time
-
Never called.
- Time(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Time
-
Internal - constructor used by generator
- Time(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Time
-
- TIME_CLASS_DATE - Static variable in class org.apache.ctakes.typesystem.type.constants.CONST
-
- Time_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
A normalized form for Time annotations.
- Time_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.Time_Type
-
initialize variables to correspond with Cas Type and Features
- TimeAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- TimeAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- TimeAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:07 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- TimeAnnotation - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- TimeAnnotation() - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
Never called.
- TimeAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
Internal - constructor used by generator
- TimeAnnotation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
- TimeAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
- TimeAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- TimeAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- TimeAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:07 EDT 2017
- TimeAnnotation_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
Equivalent to cTAKES: edu.mayo.bmi.uima.cdt.type.TimeAnnotation
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- TimeAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- TimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- TimeCondition - Class in org.apache.ctakes.drugner.fsm.elements.conditions
-
Checks whether a token is a TimeToken.
- TimeCondition() - Constructor for class org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition
-
- TimeExtractionPipeline - Class in org.apache.ctakes.temporal.pipelines
-
Given a temporal expression extraction model, run the time expression extractor
on files in a directory of notes.
- TimeExtractionPipeline() - Constructor for class org.apache.ctakes.temporal.pipelines.TimeExtractionPipeline
-
- TimeFSM - Class in org.apache.ctakes.core.fsm.machine
-
Uses one or more finite state machines to detect times in the given input of
tokens.
- TimeFSM() - Constructor for class org.apache.ctakes.core.fsm.machine.TimeFSM
-
Constructor
- TimeMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention() - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
Never called.
- TimeMention(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
Internal - constructor used by generator
- TimeMention(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
- TimeMention(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
- TimeMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).
- TimeMention_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
initialize variables to correspond with Cas Type and Features
- TimeoutMatcher - Class in org.apache.ctakes.core.util.regex
-
Class that can / should be used to find text spans using regular expressions.
- TimeoutMatcher(String, String) - Constructor for class org.apache.ctakes.core.util.regex.TimeoutMatcher
-
Uses the default timeout of 1000 milliseconds
- TimeoutMatcher(String, String, int) - Constructor for class org.apache.ctakes.core.util.regex.TimeoutMatcher
-
- TimeoutMatcher(Pattern, String) - Constructor for class org.apache.ctakes.core.util.regex.TimeoutMatcher
-
Uses the default timeout of 1000 milliseconds
- TimeoutMatcher(Pattern, String, int) - Constructor for class org.apache.ctakes.core.util.regex.TimeoutMatcher
-
Uses the default timeout of 1000 milliseconds
- TimeRelationConstants - Interface in org.apache.ctakes.temporal.utils
-
Author: SPF
Affiliation: CHIP-NLP
Date: 4/17/13
- TimeToken - Class in org.apache.ctakes.core.fsm.output
-
- TimeToken(int, int) - Constructor for class org.apache.ctakes.core.fsm.output.TimeToken
-
- TimeWordTypeExtractor<T extends org.apache.uima.jcas.tcas.Annotation> - Class in org.apache.ctakes.temporal.ae.feature
-
- TimeWordTypeExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TimeWordTypeExtractor
-
- timex_idx - Static variable in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- timex_idx - Static variable in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- TimexAdmissionTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TimexAdmissionTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TimexAdmissionTimeAnnotator
-
- TimexAnnotationCorrector() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.TimexAnnotationCorrector
-
- TimexCell - Class in org.apache.ctakes.core.cc.pretty.cell
-
- TimexCell(TextSpan) - Constructor for class org.apache.ctakes.core.cc.pretty.cell.TimexCell
-
- TimexDischargeTimeAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TimexDischargeTimeAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TimexDischargeTimeAnnotator
-
- TimeXExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- TimeXExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TimeXExtractor
-
- TimexIdxReader(InputStream) - Method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- TimexIdxReader(InputStream) - Method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- TimexIdxWriter() - Static method in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- TimexIdxWriter() - Static method in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- timexMode - Static variable in class org.apache.ctakes.temporal.nn.ae.EventEventTokenBasedAnnotator
-
- timexMode - Static variable in class org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator
-
- TimeXPropertyRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
Check is an timex argument is in the begining/end of a sentence
- TimeXPropertyRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TimeXPropertyRelationFeaturesExtractor
-
- TimeXRelationFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
extract the nearby nearest time, date information for any event
- TimeXRelationFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TimeXRelationFeaturesExtractor
-
- TimexToClearTKTimexAnnotator - Class in org.apache.ctakes.temporal.ae
-
- TimexToClearTKTimexAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.TimexToClearTKTimexAnnotator
-
- TimexTreeAlignmentStatistics - Class in org.apache.ctakes.temporal.data.analysis
-
- TimexTreeAlignmentStatistics() - Constructor for class org.apache.ctakes.temporal.data.analysis.TimexTreeAlignmentStatistics
-
- timexView - Variable in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- timexView - Variable in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- timexView - Variable in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- timexView - Variable in class org.apache.ctakes.temporal.ae.EventEventCRFRelationAnnotator
-
- timexView - Variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- TimidBaselineEventTimeRelationAnnotator - Class in org.apache.ctakes.temporal.ae.baselines
-
- TimidBaselineEventTimeRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.baselines.TimidBaselineEventTimeRelationAnnotator
-
- tkWeight - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- TlinkType - Enum in org.apache.ctakes.temporal.utils
-
Enumeration of the three temporal relation types used in THYME (before, overlap, contains)
and their reciprocals (after, overlap, contained_by)
Begins-on and Ends-on added 4-11-2013
- TLinkTypeArray2 - Class in org.apache.ctakes.temporal.utils
-
Author: SPF
Affiliation: CHIP-NLP
Date: 6/18/13
- TLinkTypeArray2(List<BinaryTextRelation>, AnnotationIdCollection) - Constructor for class org.apache.ctakes.temporal.utils.TLinkTypeArray2
-
- TlinkTypeSet - Class in org.apache.ctakes.temporal.utils
-
Author: SPF
Affiliation: CHIP-NLP
Date: 4/17/13
- TlinkTypeSet() - Constructor for class org.apache.ctakes.temporal.utils.TlinkTypeSet
-
- TOKDIST - Static variable in class org.apache.ctakes.coreference.util.CorefConsts
-
- Token - Class in org.apache.ctakes.core.nlp.tokenizer
-
Object that represents a generic token.
- Token(int, int) - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Token
-
Constructor
- TOKEN_CAP_ALL - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_CAP_FIRST_ONLY - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_CAP_MIXED - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_CAP_NONE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_POS_FIRST - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_POS_LAST - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_POS_MIDDLE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_POS_NONE - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_TYPE_DECIMAL - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_TYPE_INTEGER - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TOKEN_NUM_TYPE_UNKNOWN - Static variable in class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- tokenBeginEndTreeSet - Variable in class org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl
-
- tokenCleartkExtractors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- tokenContextFeatureExtractors - Variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine
-
- TokenConverter - Class in org.apache.ctakes.core.ae
-
Utilities methods for converting between Java Tokenizer objects and their
equivalent JCas objects.
- TokenConverter() - Constructor for class org.apache.ctakes.core.ae.TokenConverter
-
- TokenConverter - Class in org.apache.ctakes.core.fsm.token.adapter
-
- TokenConverter() - Constructor for class org.apache.ctakes.core.fsm.token.adapter.TokenConverter
-
- tokenCount - Variable in class org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator
-
- TokenFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- TokenFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.TokenFeatureExtractor
-
- tokenFeatureExtractor - Variable in class org.apache.ctakes.temporal.ae.EventAnnotator
-
- tokenFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator
-
- tokenFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.CRFTimeAnnotator
-
- tokenFeatureExtractors - Variable in class org.apache.ctakes.temporal.ae.TimeAnnotator
-
- TokenFeaturesExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- TokenFeaturesExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor
-
- TokenFreqCasConsumer - Class in org.apache.ctakes.core.cc
-
This class creates a file that contains the frequencies of the word tokens found in a set
in a text collection.
- TokenFreqCasConsumer() - Constructor for class org.apache.ctakes.core.cc.TokenFreqCasConsumer
-
- tokenize(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Tokenizes a string of text and outputs a list of Token objects.
- tokenize(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
-
Tokenize a string that is assumed to be the entire document (or at least to start at 0)
- tokenizeAndSort(String) - Method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Tokenizes a string of text and outputs a list of Token objects in sorted
order.
- Tokenizer - Class in org.apache.ctakes.core.nlp.tokenizer
-
A class used to break natural text into tokens.
- Tokenizer() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Constructor
- Tokenizer(Map<String, Integer>, int) - Constructor for class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Constructor
- TOKENIZER_PATH - Static variable in class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- TokenizerAnnotator - Class in org.apache.ctakes.core.ae
-
UIMA annotator that uses the Tokenizer module.
- TokenizerAnnotator() - Constructor for class org.apache.ctakes.core.ae.TokenizerAnnotator
-
- TokenizerAnnotatorPTB - Class in org.apache.ctakes.core.ae
-
UIMA annotator that tokenizes based on Penn Treebank rules.
- TokenizerAnnotatorPTB() - Constructor for class org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
-
- TokenizerHelper - Class in org.apache.ctakes.core.nlp.tokenizer
-
- TokenizerHelper() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.TokenizerHelper
-
- TokenizerPTB - Class in org.apache.ctakes.core.nlp.tokenizer
-
A class used to break natural text into tokens following PTB rules.
- TokenizerPTB() - Constructor for class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
-
Constructor
- tokenizeStr(String, String) - Method in class org.apache.ctakes.ytex.tools.SetupAuiFirstWord
-
tokenize the umls concept.
- tokenizeTextSegment(JCas, String, int, boolean) - Method in class org.apache.ctakes.core.nlp.tokenizer.TokenizerPTB
-
Tokenize text that starts at offset offsetAdjustment within the complete text
- tokenLengthCheckingForHyphenatedTerms(String) - Static method in class org.apache.ctakes.core.nlp.tokenizer.HyphenatedPTB
-
There is the fixed list of hyphenated words to not be split (hyphenatedWordsLookup)
And here are some made-up examples of words using affixes to keep together
chronic-itis 1 suffix
mega-huge 1 prefix
e-game-fest 1 prefix and 1 suffix
salon-o-torium 1 suffix that contains 2 hyphens
urban-esque-wise 2 suffixes
- TokenOffsetsCasConsumer - Class in org.apache.ctakes.core.cc
-
For each CAS a local file with the offsets of the BaseToken annotations is written to a directory specifed by a parameter.
- TokenOffsetsCasConsumer() - Constructor for class org.apache.ctakes.core.cc.TokenOffsetsCasConsumer
-
- TokenPropertyFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- TokenPropertyFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.TokenPropertyFeaturesExtractor
-
- tokenToString(BaseToken) - Static method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinter
-
- tokenToString(BaseToken) - Static method in class org.apache.ctakes.temporal.nn.data.GoldEventPrinterWithLabels
-
- TokenUtil - Class in org.apache.ctakes.gui.dictionary.util
-
Author: SPF
Affiliation: CHIP-NLP
Date: 1/15/14
- toLines(List<FeatureStructure>) - Static method in class org.apache.ctakes.temporal.data.analysis.CompareFeatureStructures
-
- TOPICAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- TOPICAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- TopTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode() - Constructor for class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
Never called.
- TopTreebankNode(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
Internal - constructor used by generator
- TopTreebankNode(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
- TopTreebankNode(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
- TopTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string.
- TopTreebankNode_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
initialize variables to correspond with Cas Type and Features
- toSimpleMap() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toSimpleMap() - Method in interface org.apache.ctakes.core.util.collection.CollectionMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toSimpleMap() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toSimpleMap() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toSimpleMap() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toSimpleMap() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
-
Copy of this object as a simple (java.util.Collection) map of Collection
- toString() - Method in class org.apache.ctakes.assertion.cr.NegExAnnotation
-
- toString() - Method in class org.apache.ctakes.assertion.cr.RelationInfo
-
- toString() - Method in class org.apache.ctakes.assertion.cr.Span
-
- toString() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- toString() - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation.HashableAnnotation
-
- toString() - Method in class org.apache.ctakes.core.cc.pretty.textspan.DefaultTextSpan
-
- toString() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation.Span
-
- toString() - Method in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
- toString() - Method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- toString() - Method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
- toString() - Method in class org.apache.ctakes.core.pipeline.EntityCollector.Entity
-
- toString() - Method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
- toString() - Method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.TypeProduct
-
- toString() - Method in class org.apache.ctakes.core.sentence.SentenceSpan
-
- toString() - Method in class org.apache.ctakes.core.util.Pair
-
- toString() - Method in class org.apache.ctakes.coreference.eval.helpers.Span
-
- toString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- toString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyRegex
-
- toString() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.DefaultTextSpan
- toString() - Method in class org.apache.ctakes.dictionary.lookup2.textspan.MultiTextSpan
- toString() - Method in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- toString() - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation.HashableArguments
-
- toString() - Method in class org.apache.ctakes.relationextractor.knowtator.RelationInfo
-
- toString() - Method in class org.apache.ctakes.relationextractor.knowtator.Span
-
- toString() - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations.ParameterSettings
-
- toString() - Method in class org.apache.ctakes.temporal.utils.TlinkTypeSet
- toString() - Method in class org.apache.ctakes.utils.tree.SimpleTree
-
- toString() - Method in class org.apache.ctakes.utils.wiki.SearchResult
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
print out joint distribution table
- toString() - Method in class org.apache.ctakes.ytex.kernel.IRMetrics
-
return tab delimited ir metrics:
tp fp tn fn precision recall f1
- toString() - Method in class org.apache.ctakes.ytex.kernel.metric.ConceptPair
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.metric.LCSPath
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.model.ConcRel
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.model.FeatureRank
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.model.ObjPair
-
- toString() - Method in class org.apache.ctakes.ytex.kernel.tree.Node
-
- toString() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexRule
-
- toString() - Method in class org.apache.ctakes.ytex.uima.annotators.NegexAnnotator.NegexToken
-
- toString() - Method in class org.apache.ctakes.ytex.uima.annotators.SentenceSpan
-
- toString() - Method in class org.apache.ctakes.ytex.uima.mapper.AnnoMappingInfo
-
- toString() - Method in class org.apache.ctakes.ytex.uima.mapper.ColumnMappingInfo
-
- toString() - Method in class org.apache.ctakes.ytex.uima.model.Document
-
- toString() - Method in class org.apache.ctakes.ytex.uima.model.NamedEntityRegex
-
- toString() - Method in class org.apache.ctakes.ytex.uima.model.SegmentRegex
-
- toString() - Method in class org.apache.ctakes.ytex.uima.model.UimaType
-
- toString() - Method in class org.apache.ctakes.ytex.umls.model.MRREL
-
- toString() - Method in class org.apache.ctakes.ytex.umls.model.MRSTY
-
- toString() - Method in class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- toString() - Method in class org.apache.ctakes.ytex.web.search.ConceptFirstWord
-
- toString() - Method in class org.apache.ctakes.ytex.web.search.DocumentSearchResult
-
- toSyntaxString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- totalSVPattern - Static variable in class org.apache.ctakes.ytex.libsvm.LibSVMParser
-
- toTripleString() - Method in class org.apache.ctakes.dependency.parser.util.DependencyPath
-
- toTsv() - Method in class org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact
-
- toXMIFiles(SHARPXMI.Options, List<File>) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- toYNString(Boolean) - Static method in class org.apache.ctakes.ytex.uima.model.BooleanUtil
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.assertion.attributes.features.selection.Chi2FeatureSelection
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- train(String, ObjectStream<SentenceSample>, boolean, Dictionary) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
- train(String, ObjectStream<SentenceSample>, boolean, Dictionary, int, int) - Static method in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.coreference.eval.EvaluationOfMarkableSalience
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.ModifierExtractorEvaluation
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.relationextractor.eval.RelationExtractorEvaluation
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.BinaryAlphaFeatureSelection
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.Chi2FeatureSelection
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.OddsRatioFeatureSelection
-
- train(Iterable<Instance<OUTCOME_T>>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
This train method is dedicated for training a CRF model for consecutive events within a sentence
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventProperties
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- train(CollectionReader, File) - Method in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- TRAIN_REMAINDERS - Static variable in class org.apache.ctakes.temporal.eval.THYMEData
-
- trainAndPackage(String, File, String[]) - Method in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventSpans
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfClearTKTimeSpans
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfEventSpans
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfMetaTimeExpressionExtractor
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfNEPredicateEventSpans
-
- trainAndPackage(File) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfTimeSpans
-
- trainAndRetrainAndTest(List<Integer>, List<Integer>) - Method in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- TrainAssertionModel - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- TrainAssertionModel() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.TrainAssertionModel
-
- TrainAttributeModels - Class in org.apache.ctakes.assertion.train
-
For each assertion attribute (polarity, conditional, etc), train a model using the data
in the training directories for that attribute, and store the model under the models-dir
Note that this uses constants within
AssertionConst for the directory names.
- TrainAttributeModels() - Constructor for class org.apache.ctakes.assertion.train.TrainAttributeModels
-
- trainClassifier(File, String...) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeClassifierBuilder
-
- trainDirectory - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- trainDirectory - Variable in class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation.Options
-
- trainDirectory - Variable in class org.apache.ctakes.assertion.pipelines.GenerateTreeRepresentation.Options
-
- trainDirectory - Variable in class org.apache.ctakes.relationextractor.eval.PrintRelationStatistics.Options
-
- trainGrid - Static variable in class org.apache.ctakes.assertion.train.PolarityDomainAdaptationTrain
-
- TRAINING_MODE_PARAM - Static variable in class org.apache.ctakes.dependency.parser.cr.DependencyFileCollectionReader
-
- trainingArguments - Variable in class org.apache.ctakes.relationextractor.eval.ParameterSettings
-
- trainingDirectories - Static variable in class org.apache.ctakes.assertion.util.AssertionConst
-
- TRAINLOC - Variable in class org.apache.ctakes.relationextractor.data.Splitter
-
- trainOnly - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- transactionManager - Variable in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- transactionManager - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl
-
- TRANSDERMAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- TRANSDERMAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- transform(Instance<OUTCOME_T>) - Method in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- transform(List<Feature>) - Method in class org.apache.ctakes.assertion.attributes.features.selection.FeatureSelection
-
- transform(Instance<OUTCOME_T>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- transform(List<Feature>) - Method in class org.apache.ctakes.temporal.ae.feature.selection.FeatureSelection
-
- transform(Feature) - Method in class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- TRANSMUCOSAL - Static variable in class org.apache.ctakes.drugner.elements.RouteElement
-
- TRANSMUCOSAL - Static variable in class org.apache.ctakes.drugner.fsm.output.elements.RouteToken
-
- TREATMENT - Static variable in class org.apache.ctakes.assertion.stub.ConceptType
-
- treatmentSet - Static variable in class org.apache.ctakes.assertion.medfacts.ConceptLookup
-
- tree2str(TreebankNode) - Static method in class org.apache.ctakes.constituency.parser.util.TreeUtils
-
- TREEBANK_DIRECTORY - Static variable in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- treebankDirectory - Variable in class org.apache.ctakes.temporal.ae.THYMETreebankReader
-
- treebankDirectory - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- TreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode() - Constructor for class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
Never called.
- TreebankNode(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
Internal - constructor used by generator
- TreebankNode(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
- TreebankNode(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
- TreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A Penn Treebank-style tree node.
- TreebankNode_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
initialize variables to correspond with Cas Type and Features
- TreeExtractor - Class in org.apache.ctakes.constituency.parser.treekernel
-
- TreeExtractor() - Constructor for class org.apache.ctakes.constituency.parser.treekernel.TreeExtractor
-
- TreeFeatureConsumer - Class in org.apache.ctakes.relationextractor.pipelines
-
- TreeFeatureConsumer() - Constructor for class org.apache.ctakes.relationextractor.pipelines.TreeFeatureConsumer
-
- TreeFragmentFeatureExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- TreeFragmentFeatureExtractor(String, String) - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.TreeFragmentFeatureExtractor
-
- TreeFragmentFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
- TreeFragmentFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.TreeFragmentFeatureExtractor
-
- TreeHeightBaseline - Class in org.apache.ctakes.temporal.ae.baselines
-
- TreeHeightBaseline() - Constructor for class org.apache.ctakes.temporal.ae.baselines.TreeHeightBaseline
-
- TreeKernel - Class in org.apache.ctakes.constituency.parser.treekernel
-
- TreeKernel() - Constructor for class org.apache.ctakes.constituency.parser.treekernel.TreeKernel
-
- TreeKernel(boolean) - Constructor for class org.apache.ctakes.constituency.parser.treekernel.TreeKernel
-
- TreeKernelTrainer - Class in org.apache.ctakes.coreference.treekernel.training
-
- TreeKernelTrainer(String, String) - Constructor for class org.apache.ctakes.coreference.treekernel.training.TreeKernelTrainer
-
- TreeMappingInfo - Class in org.apache.ctakes.ytex.kernel.tree
-
- TreeMappingInfo() - Constructor for class org.apache.ctakes.ytex.kernel.tree.TreeMappingInfo
-
- TreePrinter - Class in org.apache.ctakes.ytex.kernel.evaluator
-
- TreePrinter() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.TreePrinter
-
- TreeUtils - Class in org.apache.ctakes.constituency.parser.util
-
- TRIPLE_DELIM - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- TruncateCollectionFilterImpl - Class in org.apache.ctakes.dictionary.lookup.filter
-
Truncates objects in the collection.
- TruncateCollectionFilterImpl(Comparator<MetaDataHit>, int) - Constructor for class org.apache.ctakes.dictionary.lookup.filter.TruncateCollectionFilterImpl
-
Constructor
- TruthValue - Class in org.apache.ctakes.smokingstatus.util
-
- TruthValue() - Constructor for class org.apache.ctakes.smokingstatus.util.TruthValue
-
- TUI - Static variable in interface org.apache.ctakes.dictionary.lookup2.concept.Concept
-
- Tui - Enum in org.apache.ctakes.gui.dictionary.umls
-
- TuiCellRenderer - Class in org.apache.ctakes.gui.dictionary.umls
-
- TuiCellRenderer(TuiTableModel, TableCellRenderer) - Constructor for class org.apache.ctakes.gui.dictionary.umls.TuiCellRenderer
-
- TuiCodeUtil - Class in org.apache.ctakes.dictionary.lookup2.util
-
Author: SPF
Affiliation: CHIP-NLP
Date: 9/5/2014
- TuiTableModel - Class in org.apache.ctakes.gui.dictionary.umls
-
- TuiTableModel() - Constructor for class org.apache.ctakes.gui.dictionary.umls.TuiTableModel
-
- tuiToMainSui(BitSet) - Method in class org.apache.ctakes.ytex.kernel.evaluator.SemanticTypeKernel
-
- txNew - Variable in class org.apache.ctakes.ytex.kernel.AbstractBagOfWordsExporter
-
- txTemplate - Variable in class org.apache.ctakes.ytex.uima.DBCollectionReader
-
- txTemplateNew - Variable in class org.apache.ctakes.ytex.kernel.SparseDataExporterImpl
-
- type - Static variable in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
- type - Static variable in class org.apache.ctakes.assertion.medfacts.types.Concept
-
- type - Static variable in class org.apache.ctakes.assertion.zoner.types.Heading
-
- type - Static variable in class org.apache.ctakes.assertion.zoner.types.Subzone
-
- type - Static variable in class org.apache.ctakes.assertion.zoner.types.Zone
-
- type - Static variable in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
- type - Variable in class org.apache.ctakes.core.knowtator.KnowtatorAnnotation
-
The type (or "class") of annotation
- type - Static variable in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
- type - Static variable in class org.apache.ctakes.coreference.type.DemMarkable
-
- type - Static variable in class org.apache.ctakes.coreference.type.Markable
-
- type - Static variable in class org.apache.ctakes.coreference.type.MarkablePair
-
- type - Static variable in class org.apache.ctakes.coreference.type.MarkablePairSet
-
- type - Static variable in class org.apache.ctakes.coreference.type.NEMarkable
-
- type - Static variable in class org.apache.ctakes.coreference.type.Pair
-
- type - Static variable in class org.apache.ctakes.coreference.type.PronounMarkable
-
- type - Static variable in class org.apache.ctakes.drugner.type.ChunkAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.DosagesAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.DurationAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.FormAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.FrequencyAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.RouteAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.StrengthAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
- type - Static variable in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
- type - Static variable in class org.apache.ctakes.sideeffect.type.PSESentence
-
- type - Static variable in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
- type - Static variable in class org.apache.ctakes.sideeffect.type.SESentence
-
- type - Static variable in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
- type - Static variable in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
- type - Static variable in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Attribute
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodySide
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Course
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Date
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Element
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Entity
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Event
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Lab
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Medication
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Severity
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.Time
-
- type - Static variable in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Affects
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Indicates
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOf
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Prevents
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.Relation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOf
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.Demographics
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentID
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.Metadata
-
- type - Static variable in class org.apache.ctakes.typesystem.type.structured.SourceData
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADJP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADVP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.Chunk
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.CONJP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.INTJ
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.LST
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.NewlineToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.NP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.NumToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.O
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.PP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.PRT
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.SBAR
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.UCP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.VP
-
- type - Static variable in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
- type - Static variable in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.EventMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.Markable
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.List
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.Segment
-
- type - Static variable in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
- type - Static variable in class org.apache.ctakes.typesystem.type.util.Pair
-
- type - Static variable in class org.apache.ctakes.typesystem.type.util.Pairs
-
- type - Static variable in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
- type - Variable in class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
- type - Variable in class org.apache.ctakes.ytex.kernel.tree.NodeKey
-
- type - Static variable in class org.apache.ctakes.ytex.uima.types.Date
-
- type - Static variable in class org.apache.ctakes.ytex.uima.types.DocKey
-
- type - Static variable in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
- TYPE_CONTRACTION - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Contains contractions and possessives (since they cannot be
differentiated without context).
- TYPE_EOL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
A EOL token is defined as a line feed or carriage return character.
- TYPE_NUMBER - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
A number token is defined as a consecutive series of digits.
- TYPE_PUNCT - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
A punctuation token is defined as one character that can be either a
period, double quote, single quote, question mark, exclamation point,
hyphen (if not surrounded by word characters), etc...
- TYPE_SYMBOL - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
Characters @!#$%^&*?
- TYPE_SYSTEM_DESCRIPTION - Static variable in class org.apache.ctakes.assertion.medfacts.cleartk.AssertionComponents
-
- TYPE_UNKNOWN - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
The type is unknown.
- TYPE_WORD - Static variable in class org.apache.ctakes.core.nlp.tokenizer.Token
-
A word token is defined as a consecutive series of word characters.
- typeDescription(byte) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Token
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.medfacts.types.Assertion
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.medfacts.types.Assertion_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.medfacts.types.Concept
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.medfacts.types.Concept_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Heading
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Heading_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Subzone
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Subzone_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Zone
-
- typeIndexID - Static variable in class org.apache.ctakes.assertion.zoner.types.Zone_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree
-
- typeIndexID - Static variable in class org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.BooleanLabeledFS
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.BooleanLabeledFS_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.DemMarkable
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.DemMarkable_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.Markable
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.Markable_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.MarkablePair
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.MarkablePair_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.MarkablePairSet
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.MarkablePairSet_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.NEMarkable
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.NEMarkable_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.Pair
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.Pair_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.PronounMarkable
-
- typeIndexID - Static variable in class org.apache.ctakes.coreference.type.PronounMarkable_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.ChunkAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.ChunkAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DosagesAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DosagesAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DrugMentionAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DurationAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.DurationAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FormAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FormAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FractionStrengthAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FrequencyAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FrequencyAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.RangeStrengthAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.RouteAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.RouteAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.StrengthAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.StrengthAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.SubSectionAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.SubSectionAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.PSESentence
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.PSESentence_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.PSESentenceFeature
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.PSESentenceFeature_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.SESentence
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.SESentence_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.sideeffect.type.SideEffectAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.i2b2.type.RecordSentence_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.AttributeValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DateAttributeValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.DocumentID_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NominalAttributeValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.NumericAttributeValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.libsvm.StringAttributeValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Attribute
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Attribute_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodySide
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.BodySide_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Course
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Course_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Date
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Date_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Element
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Element_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Entity
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Entity_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Event
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Event_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.EventProperties
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.EventProperties_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Lab
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Lab_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabValue
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.LabValue_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Medication
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Medication_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationForm
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Procedure
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Procedure_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Severity
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Severity_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.SignSymptom
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Time
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.Time_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Affects
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Affects_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AttributeRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Contraindicates
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Contraindicates_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOf
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOf_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Diagnoses
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Diagnoses_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ElementRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ElementRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Indicates
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Indicates_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOf
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOf_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreats
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOf
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Prevents
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Prevents_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Relation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.Relation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.RelationArgument
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.RelationArgument_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOf
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOf_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.Demographics
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.Demographics_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentClassification
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentID
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentID_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentPath
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.DocumentPath_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.Metadata
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.Metadata_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.SourceData
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.structured.SourceData_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADJP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADJP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADVP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ADVP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.BaseToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.BaseToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.Chunk
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.Chunk_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.CONJP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.CONJP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ContractionToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.INTJ
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.INTJ_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.Lemma
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.Lemma_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.LST
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.LST_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NewlineToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NumToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.NumToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.O
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.O_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PRT
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PRT_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.SBAR
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.SBAR_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.SymbolToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TreebankNode
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.UCP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.UCP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.VP
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.VP_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.WordToken
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.CourseModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.EntityMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.EntityMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.EventMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.EventMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.GenericModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Markable
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Markable_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Modifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Modifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Predicate
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.Predicate_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeMention
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.TimeMention_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.List
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.List_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.ListEntry
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.ListEntry_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Paragraph
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Paragraph_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Segment
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Segment_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Sentence
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.textspan.Sentence_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.Pair
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.Pair_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.Pairs
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.Pairs_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution
-
- typeIndexID - Static variable in class org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.Date
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.Date_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.DocKey
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.DocKey_Type
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.KeyValuePair
-
- typeIndexID - Static variable in class org.apache.ctakes.ytex.uima.types.KeyValuePair_Type
-
- TypeProductListModel - Class in org.apache.ctakes.gui.pipeline.bit.info
-
- TypeProductListModel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.info.TypeProductListModel
-
- TypeProductRenderer - Class in org.apache.ctakes.gui.pipeline.bit.info
-
- TypeProductRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.info.TypeProductRenderer
-
U
- UCP - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- UCP - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- UCP - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- UCP - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- UCP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.UCP
-
Never called.
- UCP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.UCP
-
Internal - constructor used by generator
- UCP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.UCP
-
- UCP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.UCP
-
- UCP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- UCP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- UCP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- UCP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- UCP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.UCP_Type
-
initialize variables to correspond with Cas Type and Features
- UIMA_ARRAY_INDEX_KEYWORD - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_ARRAY_SIZE_KEYWORD - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_CAS - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_EMPTY_FSLIST - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_FSARRAY - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_INTARRAY - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_LIST_HEAD_KEYWORD - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_LIST_TAIL_KEYWORD - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_NONEMPTY_FSLIST - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_REF_SOFA - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_SOFA - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_SOFA_STRING - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UIMA_TCAS_DOCUMENT - Static variable in class org.apache.ctakes.utils.xcas_comparison.Const
-
- UimaType - Class in org.apache.ctakes.ytex.uima.model
-
Reference data.
- UimaType() - Constructor for class org.apache.ctakes.ytex.uima.model.UimaType
-
- UimaType(int, String) - Constructor for class org.apache.ctakes.ytex.uima.model.UimaType
-
- UMLSADDR_PARAM - Static variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- UmlsAuiFirstWord - Class in org.apache.ctakes.ytex.umls.model
-
- UmlsAuiFirstWord() - Constructor for class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- UmlsAuiFirstWord(String, String) - Constructor for class org.apache.ctakes.ytex.umls.model.UmlsAuiFirstWord
-
- UMLSBasedTokenFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- UMLSBasedTokenFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.UMLSBasedTokenFeaturesExtractor
-
- UmlsConcept - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept() - Constructor for class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
Never called.
- UmlsConcept(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
Internal - constructor used by generator
- UmlsConcept(JCas) - Constructor for class org.apache.ctakes.typesystem.type.refsem.UmlsConcept
-
- UmlsConcept_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept_Type - Class in org.apache.ctakes.typesystem.type.refsem
-
Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes.
- UmlsConcept_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type
-
initialize variables to correspond with Cas Type and Features
- UmlsConceptCreator - Interface in org.apache.ctakes.dictionary.lookup2.consumer
-
- umlsDao - Variable in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- UMLSDao - Interface in org.apache.ctakes.ytex.umls.dao
-
- UMLSDaoImpl - Class in org.apache.ctakes.ytex.umls.dao
-
- UMLSDaoImpl() - Constructor for class org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl
-
- UmlsDictionaryLookupAnnotator - Class in org.apache.ctakes.dictionary.lookup.ae
-
UIMA annotator that identified entities based on lookup.
- UmlsDictionaryLookupAnnotator() - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- UMLSFeatureExtractor - Class in org.apache.ctakes.coreference.ae.features
-
- UMLSFeatureExtractor() - Constructor for class org.apache.ctakes.coreference.ae.features.UMLSFeatureExtractor
-
- UmlsFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- UmlsFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.UmlsFeatureExtractor
-
- umlsFirstWordComparator - Static variable in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
- umlsFirstWordComparator - Static variable in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
- UmlsItemCell - Interface in org.apache.ctakes.core.cc.pretty.cell
-
Item Cell for an umls entity
- UmlsJdbcConceptFactory - Class in org.apache.ctakes.dictionary.lookup2.concept
-
- UmlsJdbcConceptFactory(String, UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.concept.UmlsJdbcConceptFactory
-
- UmlsJdbcRareWordDictionary - Class in org.apache.ctakes.dictionary.lookup2.dictionary
-
- UmlsJdbcRareWordDictionary(String, UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
-
- UMLSPW_PARAM - Static variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- UMLSRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation() - Constructor for class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
Never called.
- UMLSRelation(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
Internal - constructor used by generator
- UMLSRelation(JCas) - Constructor for class org.apache.ctakes.typesystem.type.relation.UMLSRelation
-
- UMLSRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation_Type - Class in org.apache.ctakes.typesystem.type.relation
-
A biomedical relationship between two spans of text that have been mapped to UMLS concepts.
- UMLSRelation_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type
-
initialize variables to correspond with Cas Type and Features
- UmlsSingleFeatureExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- UmlsSingleFeatureExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.UmlsSingleFeatureExtractor
-
- UmlsTermUtil - Class in org.apache.ctakes.gui.dictionary.umls
-
Contains all the methods used to parse individual text definitions of umls terms
Author: SPF
Affiliation: CHIP-NLP
Date: 1/16/14
- UmlsTermUtil(String) - Constructor for class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- UmlsTermUtil(String, String, String, String, String, String, String, String, String, String) - Constructor for class org.apache.ctakes.gui.dictionary.umls.UmlsTermUtil
-
- UmlsToSnomedConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
Implementation that takes UMLS dictionary lookup hits and stores as NamedEntity
objects only the ones that have a SNOMED synonym.
- UmlsToSnomedConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl
-
- UmlsToSnomedDbConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
Implementation that takes UMLS dictionary lookup hits and stores as NamedEntity
objects only the ones that have a SNOMED synonym, by looking in a database
for SNOMED codes that map to the identified CUI.
- UmlsToSnomedDbConsumerImpl(UimaContext, Properties, int) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl
-
- UmlsToSnomedDbConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl
-
- UmlsToSnomedLuceneConsumerImpl - Class in org.apache.ctakes.dictionary.lookup.ae
-
Implementation that takes UMLS dictionary lookup hits and stores as NamedEntity
objects only the ones that have a SNOMED synonym, by looking in a lucene index
for SNOMED codes that map to the identified CUI.
- UmlsToSnomedLuceneConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl
-
- UmlsToSnomedLuceneConsumerImpl(UimaContext, Properties, int) - Constructor for class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl
-
- UMLSUSER_PARAM - Static variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- UmlsUserApprover - Enum in org.apache.ctakes.dictionary.lookup2.util
-
Used to validate UMLS license / user.
- UMLSVENDOR_PARAM - Static variable in class org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator
-
- UncertaintyCleartkAnalysisEngine - Class in org.apache.ctakes.assertion.medfacts.cleartk
-
- UncertaintyCleartkAnalysisEngine() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine
-
- UncertaintyFeatureExtractor - Class in org.apache.ctakes.assertion.medfacts.cleartk.extractors
-
- UncertaintyFeatureExtractor() - Constructor for class org.apache.ctakes.assertion.medfacts.cleartk.extractors.UncertaintyFeatureExtractor
-
- UncertaintyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier() - Constructor for class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
Never called.
- UncertaintyModifier(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
Internal - constructor used by generator
- UncertaintyModifier(JCas) - Constructor for class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
- UncertaintyModifier(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier
-
- UncertaintyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier_Type - Class in org.apache.ctakes.typesystem.type.textsem
-
An introduction of a measure of doubt into a statement.
- UncertaintyModifier_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type
-
initialize variables to correspond with Cas Type and Features
- UnexpandedTokenFeaturesExtractor - Class in org.apache.ctakes.temporal.ae.feature
-
- UnexpandedTokenFeaturesExtractor() - Constructor for class org.apache.ctakes.temporal.ae.feature.UnexpandedTokenFeaturesExtractor
-
- union(int, int) - Method in class org.apache.ctakes.coreference.util.ParentPtrTree
-
- UNKNOWN_TABLE_TYPE - Static variable in class org.apache.ctakes.preprocessor.ClinicalNotePreProcessor
-
- UnknownSmokerNamedEntityAnnotation - Class in org.apache.ctakes.smokingstatus.type
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- UnknownSmokerNamedEntityAnnotation() - Constructor for class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
Never called.
- UnknownSmokerNamedEntityAnnotation(int, TOP_Type) - Constructor for class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
Internal - constructor used by generator
- UnknownSmokerNamedEntityAnnotation(JCas) - Constructor for class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
- UnknownSmokerNamedEntityAnnotation(JCas, int, int) - Constructor for class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
-
- UnknownSmokerNamedEntityAnnotation_Type - Class in org.apache.ctakes.smokingstatus.type
-
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- UnknownSmokerNamedEntityAnnotation_Type(JCas, Type) - Constructor for class org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation_Type
-
initialize variables to correspond with Cas Type and Features
- UnknownSmokerNamedEntityLookupConsumerImpl - Class in org.apache.ctakes.smokingstatus.lookup.ae
-
copied from edu.may.bmi.uima.lookup.ae.NamedEntityLookupConsumerImpl in the "Dictionary Lookup" project
- UnknownSmokerNamedEntityLookupConsumerImpl(UimaContext, Properties) - Constructor for class org.apache.ctakes.smokingstatus.lookup.ae.UnknownSmokerNamedEntityLookupConsumerImpl
-
- unmarshalSrcXml(String) - Method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryBind
-
- unmarshalStrXml(String) - Method in class org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryBind
-
- unpackageClassifier(JarInputStream) - Method in class org.apache.ctakes.temporal.keras.KerasStringOutcomeClassifierBuilder
-
- unsetConfig() - Static method in class org.apache.ctakes.ytex.uima.mapper.MapperConfig
-
- UP_ARC_A - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- UP_ARC_B - Static variable in class org.apache.ctakes.dependency.parser.util.Delim
-
- UP_NODES - Static variable in class org.apache.ctakes.assertion.pipelines.GenerateDependencyRepresentation
-
- update(String, OUTCOME_T, int) - Method in class org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- update(String, OUTCOME_T, int) - Method in class org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.MutualInformationStats
-
- updateConceptGraph(ValueChangeEvent) - Method in class org.apache.ctakes.ytex.web.search.SemanticSimBean
-
handle selecting different concept graph
- updateLabelClassMapTransductive() - Method in class org.apache.ctakes.ytex.kernel.BaseSparseDataFormatter
-
add the 'unlabeled' class id to the classIndexMap if it isn't there
already
- updateList(ValueChangeEvent) - Method in class org.apache.ctakes.ytex.web.search.ConceptLookupBean
-
Called when a user has modifed the SelectInputText value.
- updateList(ValueChangeEvent) - Method in class org.apache.ctakes.ytex.web.search.SemanticSearchBean
-
Called when a user has modifed the SelectInputText value.
- updateSemiSupervisedPredictions(ClassifierEvaluation, List<List<Long>>, boolean, int[]) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
used by semil & svmlin to store semisupervised predictions.
- updateSemiSupervisedPredictions(ClassifierEvaluation, List<BaseClassifierEvaluationParser.InstanceClassInfo>, boolean, String[], Map<String, Integer>) - Method in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- updateUI() - Method in class org.apache.ctakes.gui.component.SmoothToolTip
-
Notification from the UIManager that the L&F has changed.
- UriToDocumentTextAnnotatorCtakes() - Constructor for class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.UriToDocumentTextAnnotatorCtakes
-
- UriToDocumentTextAnnotatorCtakes() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes
-
- url - Variable in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
- URL_PARAM - Static variable in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
- URL_PREFIX - Static variable in class org.apache.ctakes.gui.dictionary.util.HsqlUtil
-
- urlToSchema(URL) - Static method in class org.apache.ctakes.jdl.data.xml.SchemaUtil
-
- usage(Logger) - Static method in class org.apache.ctakes.core.ae.SentenceDetector
-
- usage(Logger) - Static method in class org.apache.ctakes.ytex.uima.annotators.SentenceDetector
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- useClosure - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- useClosure - Variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- useClosure - Variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- useClosure - Variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- useEvaluationLogFile - Static variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfBothEEAndETRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventDocTimeRelDeepPhe
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventCRFRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventDeepPheRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventHybridModelsRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventEventThymeRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeDeepPheRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfEventTimeRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfI2B2TemporalRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.EvaluationOfSelfEventTimeRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.NeuralEventEventRelationsCNNEvaluation
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsCNNEvaluation
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.eval.NeuralEventTimeRelationsEvaluation
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.nn.eval.EvaluationOfNeuralEEAndETRelations
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.nn.eval.EventEventNeuralEvaluation
-
- useGoldAttributes - Variable in class org.apache.ctakes.temporal.nn.eval.EventTimeNeuralEvaluation
-
- useLemmatizer - Variable in class org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE
-
- USER_PARAM - Static variable in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
- UserBit - Interface in org.apache.ctakes.gui.pipeline.bit.user
-
- UserBitInfoPanel - Class in org.apache.ctakes.gui.pipeline.bit.user
-
- UserBitInfoPanel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.user.UserBitInfoPanel
-
- UserBitListModel - Class in org.apache.ctakes.gui.pipeline.bit.user
-
- UserBitListModel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.user.UserBitListModel
-
- UserBitRenderer - Class in org.apache.ctakes.gui.pipeline.bit.user
-
- UserBitRenderer() - Constructor for class org.apache.ctakes.gui.pipeline.bit.user.UserBitRenderer
-
- username - Variable in class org.apache.ctakes.jdl.schema.xdl.JdbcType
-
- UserParameterInfoPanel - Class in org.apache.ctakes.gui.pipeline.bit.user
-
- UserParameterInfoPanel() - Constructor for class org.apache.ctakes.gui.pipeline.bit.user.UserParameterInfoPanel
-
- useTmp - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- useTokenEnd - Variable in class org.apache.ctakes.core.sentence.SentenceDetectorCtakes
-
- useYtexNegation - Variable in class org.apache.ctakes.assertion.eval.AssertionEvaluation.Options
-
- Utility - Class in org.apache.ctakes.preprocessor
-
- Utility() - Constructor for class org.apache.ctakes.preprocessor.Utility
-
- Utils - Class in org.apache.ctakes.relationextractor.ae.baselines
-
- Utils() - Constructor for class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
- Utils - Class in org.apache.ctakes.relationextractor.data.analysis
-
Various useful classes and methods.
- Utils() - Constructor for class org.apache.ctakes.relationextractor.data.analysis.Utils
-
- Utils - Class in org.apache.ctakes.temporal.duration
-
Various useful classes and methods for evaluating event duration data.
- Utils() - Constructor for class org.apache.ctakes.temporal.duration.Utils
-
- Utils.Callback - Class in org.apache.ctakes.relationextractor.data.analysis
-
Read word embeddings from file.
- Utils.Callback - Class in org.apache.ctakes.temporal.duration
-
Read event duration distributions from file.
V
- v1 - Variable in class org.apache.ctakes.ytex.kernel.model.ObjPair
-
- v2 - Variable in class org.apache.ctakes.ytex.kernel.model.ObjPair
-
- validate() - Method in class org.apache.ctakes.gui.component.CellRendererLabel
-
- validate(SHARPXMI.EvaluationOptions) - Static method in class org.apache.ctakes.relationextractor.eval.SHARPXMI
-
- validateDegreeOfArgumentTypes(RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
Are entity types of the arguments valid for degree_of relation?
The following are the valid combinations:
degree-of(disease/disorder/2, modifier)
degree-of(sign/symptom/3, modifier)
- validateHyphenMap(Map<String, Integer>) - Static method in class org.apache.ctakes.core.nlp.tokenizer.Tokenizer
-
Validate the structure of the hyphen map.
- validateLocationOfArgumentTypes(RelationExtractorAnnotator.IdentifiedAnnotationPair) - Static method in class org.apache.ctakes.relationextractor.ae.baselines.Utils
-
Are entity types of the arguments valid for location_of relation?
The following combinations are allowed:
location-of(anatomical site/6, disorder/2)
location-of(anatomical site/6, sign/symptom/3)
location-of(anatomical site/6, procedure/5)
- validateProps(Properties) - Method in interface org.apache.ctakes.ytex.kernel.CytoscapeHelper
-
- validateProps(Properties) - Method in class org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl
-
- validateText() - Method in class org.apache.ctakes.gui.pipeline.piper.PiperTextFilter
-
- Validation - Class in org.apache.ctakes.jdl.data.xml
-
Validation between Schema and XML.
- Validation(Schema) - Constructor for class org.apache.ctakes.jdl.data.xml.Validation
-
- Validation(String) - Constructor for class org.apache.ctakes.jdl.data.xml.Validation
-
- Validation(Schema, Document) - Constructor for class org.apache.ctakes.jdl.data.xml.Validation
-
- Validation(Schema, String) - Constructor for class org.apache.ctakes.jdl.data.xml.Validation
-
- VALIDATION_FEATURE_ID - Static variable in class org.apache.ctakes.jdl.data.xml.SaxParser
-
Validation feature id (http://xml.org/sax/features/validation).
- value - Variable in class org.apache.ctakes.assertion.cr.ArgumentInfo
-
- value - Variable in class org.apache.ctakes.relationextractor.knowtator.ArgumentInfo
-
- value - Variable in class org.apache.ctakes.ytex.kernel.tree.NodeKey
-
- valueOf(String) - Static method in enum org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.CombineScoreMethod
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.assertion.cc.JudgeAttributeInstances.Selector
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine.FEATURE_CONFIG
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.assertion.pipelines.SharpCorpusSplit.Subcorpus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO.FEAT_CONFIG
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.cc.JdbcWriterTemplate.I2b2FieldInfo
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.cc.pretty.SemanticGroup
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.cleartk.ContinuousTextExtractor.OovStrategy
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.Role
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.TypeProduct
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.EVAL_SYSTEM
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.helpers.B3Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.helpers.CEAFType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.helpers.KAlphaType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.helpers.MatType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.coreference.eval.helpers.PairType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.dictionary.lookup2.util.CuiCodeUtil
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.dictionary.umls.CuiCodeUtil
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.dictionary.umls.MrconsoIndex
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.dictionary.umls.MrstyIndex
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.dictionary.umls.Tui
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoComparator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.ProductIconFactory
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitFinder
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluateOn
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe.State
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.CombineScoreMethod
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Subcorpus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMLFormat
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator.OutputMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser.ParseOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator.MeasureType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService.SimilarityMetricEnum
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.ytex.kernel.SparseDataExporter.ScopeEnum
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixType
-
Deprecated.
Returns the enum constant of this type with the specified name.
- values() - Static method in enum org.apache.ctakes.assertion.attributes.features.selection.MutualInformationFeatureSelection.CombineScoreMethod
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.assertion.cc.JudgeAttributeInstances.Selector
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.assertion.medfacts.cleartk.AssertionCleartkAnalysisEngine.FEATURE_CONFIG
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.assertion.pipelines.SharpCorpusSplit.Subcorpus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.ae.SentenceDetectorAnnotatorBIO.FEAT_CONFIG
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.cc.JdbcWriterTemplate.I2b2FieldInfo
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.cc.pretty.SemanticGroup
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.cleartk.ContinuousTextExtractor.OovStrategy
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.pipeline.CuiCollector
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.pipeline.EntityCollector
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.Role
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.core.pipeline.PipeBitInfo.TypeProduct
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Method in class org.apache.ctakes.core.util.collection.ArrayListMap
- values() - Method in class org.apache.ctakes.core.util.collection.DefaultCollectionMap
- values() - Method in class org.apache.ctakes.core.util.collection.EnumSetMap
- values() - Method in class org.apache.ctakes.core.util.collection.HashSetMap
- values() - Method in class org.apache.ctakes.core.util.collection.ImmutableCollectionMap
- values() - Static method in enum org.apache.ctakes.core.util.PropertyAeFactory
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.EvaluationOfEventCoreference.EVAL_SYSTEM
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.helpers.B3Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.helpers.CEAFType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.helpers.KAlphaType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.helpers.MatType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.coreference.eval.helpers.PairType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.dictionary.lookup.vo.LookupTokenComparator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.CuiCodeUtil
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.dictionary.umls.CuiCodeUtil
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.dictionary.umls.MrconsoIndex
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.dictionary.umls.MrstyIndex
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.dictionary.umls.Tui
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.dictionary.umls.VocabularyStore
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.PipeBitInfoComparator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.pipeline.bit.info.ProductIconFactory
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitFinder
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.gui.pipeline.bit.PipeBitPainter
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.relationextractor.eval.SHARPXMI.EvaluateOn
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.relationextractor.metastasis.AnatomicalSiteListExtractorPipeline.ListAndConjunctionAe.State
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.temporal.ae.feature.selection.MutualInformationFeatureSelection.CombineScoreMethod
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.temporal.eval.Evaluation_ImplBase.Subcorpus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMLFormat
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.temporal.nn.ae.EventTimeTokenBasedAnnotator.OutputMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.temporal.utils.TlinkType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser.ParseOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluator.MeasureType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityService.SimilarityMetricEnum
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.ytex.kernel.SparseDataExporter.ScopeEnum
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.apache.ctakes.ytex.weka.GramMatrixExporterImpl.GramMatrixType
-
Deprecated.
Returns an array containing the constants of this enum type, in
the order they are declared.
- VariantPhraseBuilderImpl - Class in org.apache.ctakes.dictionary.lookup.phrasebuilder
-
Builds phrases based on various variants of a LookupToken.
- VariantPhraseBuilderImpl(String[], boolean) - Constructor for class org.apache.ctakes.dictionary.lookup.phrasebuilder.VariantPhraseBuilderImpl
-
Constructor
- VENDOR_PARAM - Static variable in enum org.apache.ctakes.dictionary.lookup2.util.UmlsUserApprover
-
- viewDocuments() - Method in class org.apache.ctakes.ytex.tools.DBAnnotationViewerMain
-
- VocabularyStore - Enum in org.apache.ctakes.gui.dictionary.umls
-
- VP - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-side-effect/target/jcasgen/typesystem.xml
- VP - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-smoking-status/target/jcasgen/typesystem.xml
- VP - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-type-system/target/jcasgen/typesystem.xml
- VP - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-ytex-uima/target/jcasgen/typesystem.xml
- VP() - Constructor for class org.apache.ctakes.typesystem.type.syntax.VP
-
Never called.
- VP(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.VP
-
Internal - constructor used by generator
- VP(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.VP
-
- VP(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.VP
-
- VP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:44 EDT 2017
- VP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:45 EDT 2017
- VP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:06 EDT 2017
- VP_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
A verb phrase
Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP
Updated by JCasGen Mon Apr 24 21:42:51 EDT 2017
- VP_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.VP_Type
-
initialize variables to correspond with Cas Type and Features
W
- WEEKLY - Static variable in class org.apache.ctakes.drugner.elements.FrequencyUnitElement
-
- WeightedPolynomialMixingKernel - Class in org.apache.ctakes.ytex.kernel.evaluator
-
weighted polynomial mixing kernel:
(\sum w_i * k(x_i, y_i) \div \sum w_i ) ^ l
Apply the delegate kernel to the respective 'parts' of this node (x_i,
y_i)
Multiply the result by the weight (w_i * k(x_i,y_i))
Sum everything up, divide by the sum of the weights
take the power of everything to l
WeightedPolynomialMixingKernel.pow the power to raise things to
WeightedPolynomialMixingKernel.attributeKey the children of this node form a 'vector'.
- WeightedPolynomialMixingKernel() - Constructor for class org.apache.ctakes.ytex.kernel.evaluator.WeightedPolynomialMixingKernel
-
- WekaAttributeEvaluator - Interface in org.apache.ctakes.ytex.weka
-
- WekaAttributeEvaluatorFormatter(String, String, String) - Constructor for class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl.WekaAttributeEvaluatorFormatter
-
- WekaAttributeEvaluatorImpl - Class in org.apache.ctakes.ytex.weka
-
- WekaAttributeEvaluatorImpl() - Constructor for class org.apache.ctakes.ytex.weka.WekaAttributeEvaluatorImpl
-
- WekaAttributeEvaluatorImpl.WekaAttributeEvaluatorFormatter - Class in org.apache.ctakes.ytex.weka
-
- WekaBagOfWordsExporter - Interface in org.apache.ctakes.ytex.weka
-
- WekaBagOfWordsExporterImpl - Class in org.apache.ctakes.ytex.weka
-
- WekaBagOfWordsExporterImpl() - Constructor for class org.apache.ctakes.ytex.weka.WekaBagOfWordsExporterImpl
-
- WekaFormatter(KernelUtil) - Constructor for class org.apache.ctakes.ytex.weka.WekaFormatterFactory.WekaFormatter
-
- WekaFormatterFactory - Class in org.apache.ctakes.ytex.weka
-
- WekaFormatterFactory() - Constructor for class org.apache.ctakes.ytex.weka.WekaFormatterFactory
-
- WekaFormatterFactory.WekaFormatter - Class in org.apache.ctakes.ytex.weka
-
- WekaResultInstanceImporter - Interface in org.apache.ctakes.ytex.weka
-
Import the weka results for the specified instance.
- WekaResultsImporter - Interface in org.apache.ctakes.ytex.weka
-
parse weka instance output when classifier run with -p option.
- WekaResultsImporterImpl - Class in org.apache.ctakes.ytex.weka
-
parse weka instance output when classifier run with -p option.
- WekaResultsImporterImpl() - Constructor for class org.apache.ctakes.ytex.weka.WekaResultsImporterImpl
-
- WekaResultsImporterImpl.ClassifierEvaluationInstanceImporter - Class in org.apache.ctakes.ytex.weka
-
- WikiIndex - Class in org.apache.ctakes.utils.wiki
-
A wrapper for a wikipedia lucene index.
- WikiIndex(int, String, String, boolean) - Constructor for class org.apache.ctakes.utils.wiki.WikiIndex
-
- WikiIndex(int, String, String) - Constructor for class org.apache.ctakes.utils.wiki.WikiIndex
-
- WikiIndex() - Constructor for class org.apache.ctakes.utils.wiki.WikiIndex
-
- WINDOW_ANNOTATION_CLASS_PARAM - Static variable in class org.apache.ctakes.necontexts.ContextAnnotator
-
"WindowAnnotationClass" is a required, single, string parameter that
specifies the annotation type of the windows that specify the hard
boundaries of scopes.
- WindowProcessor - Interface in org.apache.ctakes.dictionary.lookup2.ae
-
Processes an Annotation window in the cas, adding discovered terms to a map.
- WithinSentenceBeforeRelationAnnotator - Class in org.apache.ctakes.temporal.ae
-
- WithinSentenceBeforeRelationAnnotator() - Constructor for class org.apache.ctakes.temporal.ae.WithinSentenceBeforeRelationAnnotator
-
- WordEmbeddings - Class in org.apache.ctakes.utils.distsem
-
- WordEmbeddings(int) - Constructor for class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- WordEmbeddings(Map<String, WordVector>) - Constructor for class org.apache.ctakes.utils.distsem.WordEmbeddings
-
- WordNetFeatureExtractor - Class in org.apache.ctakes.relationextractor.ae.features
-
Features that are based on WordNet.
- WordNetFeatureExtractor() - Constructor for class org.apache.ctakes.relationextractor.ae.features.WordNetFeatureExtractor
-
- wordNetPath - Static variable in class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
- WordNetUtils - Class in org.apache.ctakes.relationextractor.ae.features
-
This is a wrapper for the MIT WordNet inteface that simplifies basic operations
such as retrieving synonyms and hypernyms for a word.
- WordNetUtils() - Constructor for class org.apache.ctakes.relationextractor.ae.features.WordNetUtils
-
- wordNonOverlapCount(Set<String>, Set<String>) - Static method in class org.apache.ctakes.coreference.ae.features.cluster.MentionClusterStringFeaturesExtractor
-
- wordOverlap(Set<String>, Set<String>) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- WordSenseDisambiguator - Interface in org.apache.ctakes.ytex.kernel.wsd
-
- WordSenseDisambiguatorImpl - Class in org.apache.ctakes.ytex.kernel.wsd
-
- WordSenseDisambiguatorImpl() - Constructor for class org.apache.ctakes.ytex.kernel.wsd.WordSenseDisambiguatorImpl
-
- WordSetCondition - Class in org.apache.ctakes.core.fsm.condition
-
- WordSetCondition(Set<String>, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.WordSetCondition
-
- wordSubstring(Set<String>, Set<String>) - Static method in class org.apache.ctakes.coreference.ae.features.StringMatchingFeatureExtractor
-
- WordToken - Interface in org.apache.ctakes.core.fsm.token
-
- WordToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken() - Constructor for class org.apache.ctakes.typesystem.type.syntax.WordToken
-
Never called.
- WordToken(int, TOP_Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.WordToken
-
Internal - constructor used by generator
- WordToken(JCas) - Constructor for class org.apache.ctakes.typesystem.type.syntax.WordToken
-
- WordToken(JCas, int, int) - Constructor for class org.apache.ctakes.typesystem.type.syntax.WordToken
-
- WordToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken_Type - Class in org.apache.ctakes.typesystem.type.syntax
-
Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
- WordToken_Type(JCas, Type) - Constructor for class org.apache.ctakes.typesystem.type.syntax.WordToken_Type
-
initialize variables to correspond with Cas Type and Features
- WordTokenAdapter - Class in org.apache.ctakes.core.fsm.adapters
-
Adapts JCas token annotation to interface expected by the Context Dependent
Tokenizer.
- WordTokenAdapter(WordToken) - Constructor for class org.apache.ctakes.core.fsm.adapters.WordTokenAdapter
-
- WordTokenAdapter - Class in org.apache.ctakes.core.fsm.token.adapter
-
Adapts a Context Free Tokenizer token into a Context Dependent Tokenizer
WordToken.
- WordTokenAdapter(Token) - Constructor for class org.apache.ctakes.core.fsm.token.adapter.WordTokenAdapter
-
- WordTokenUtil - Class in org.apache.ctakes.core.util
-
- wordTypeExtractor - Variable in class org.apache.ctakes.temporal.ae.ConstituencyBasedTimeAnnotator
-
- WordValueCondition - Class in org.apache.ctakes.core.fsm.condition
-
- WordValueCondition(String, boolean) - Constructor for class org.apache.ctakes.core.fsm.condition.WordValueCondition
-
- WordVector - Class in org.apache.ctakes.utils.distsem
-
- WordVector(String, double[]) - Constructor for class org.apache.ctakes.utils.distsem.WordVector
-
- WordVectorReader - Class in org.apache.ctakes.utils.distsem
-
- WordVectorReader(InputStream) - Constructor for class org.apache.ctakes.utils.distsem.WordVectorReader
-
- wrapAsFsmTokens(List) - Method in class org.apache.ctakes.drugner.ae.impl.NegContextInitializerImpl
-
- wrapAsFsmTokens(List<? extends Annotation>) - Method in class org.apache.ctakes.necontexts.NamedEntityContextAnalyzer
-
This method converts Token annotations to TextTokens required by the fsm library used by both subclasses of this class.
- wrapAsFsmTokens(List<? extends Annotation>) - Method in class org.apache.ctakes.smokingstatus.context.NamedEntityContextAnalyzer
-
This method converts Token annotations to TextTokens required by the fsm library used by both subclasses of this class.
- write(Instance<String>) - Method in class org.apache.ctakes.temporal.keras.ScriptStringFeatureDataWriter
-
- WriteAnaforaXML() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteAnaforaXML
-
- writeAnnotation(AnnotationFS, Writer) - Static method in class org.apache.ctakes.core.cc.TextSpanWriter
-
Write a sentence from the document text
- WriteClearNLPDescriptors - Class in org.apache.ctakes.dependency.parser.ae.util
-
Use this to generate UIMA xml description files for the ClearNLP analysis engines.
- WriteClearNLPDescriptors() - Constructor for class org.apache.ctakes.dependency.parser.ae.util.WriteClearNLPDescriptors
-
- WriteClearNLPDescriptors.Options - Class in org.apache.ctakes.dependency.parser.ae.util
-
- writeConcepts(Connection, Map<Long, Concept>) - Static method in class org.apache.ctakes.gui.dictionary.util.RareWordDbWriter
-
- writeEncoded(FeatureVector, Integer) - Method in class org.apache.ctakes.temporal.keras.KerasStringOutcomeDataWriter
-
- writeEncoded(FeatureVector, Integer) - Method in class org.apache.ctakes.temporal.keras.ScriptStringOutcomeDataWriter
-
- writeFile(JCas, String, String, String) - Method in class org.apache.ctakes.core.cc.AbstractOutputFileWriter
-
Write information into a file named based upon the document id and located based upon the document id prefix.
- writeFile(JCas, String, String, String) - Method in class org.apache.ctakes.core.cc.FileTreeXmiWriter
-
Write information into a file named based upon the document id and located based upon the document id prefix.
- writeFile(JCas, String) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriter
-
- writeFile(JCas, String, String, String) - Method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriterFit
-
Write information into a file named based upon the document id and located based upon the document id prefix.
- WriteI2B2XML() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.WriteI2B2XML
-
- writeInstance(String, List<Feature>, String) - Static method in class org.apache.ctakes.temporal.duration.Utils
-
Output label and list of cleartk features to a file for debugging.
- writeJCasInformation(JCas, int, long, String, Timestamp) - Method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
The main "process" method, called from processCas
- writeJCasInformation(JCas, int, long, String, Timestamp) - Method in class org.apache.ctakes.core.cc.JdbcWriterTemplate
-
The main "process" method, called from processCas
- writeLibsvmLine(BufferedWriter, SortedMap<Integer, Double>) - Method in class org.apache.ctakes.ytex.libsvm.LibSVMFormatterFactory.LibSVMFormatter
-
- writeNamedSets(String, String, Map<String, Collection<String>>) - Static method in class org.apache.ctakes.gui.dictionary.util.FileUtil
-
Deprecated.
- writeOneColumn(String, String, Collection<String>) - Static method in class org.apache.ctakes.gui.dictionary.util.FileUtil
-
- writeSentence(JCas, AnnotationFS, BufferedWriter) - Static method in class org.apache.ctakes.core.cc.pretty.plaintext.PrettyTextWriter
-
Write a sentence from the document text
- writeSentence(JCas, AnnotationFS, BufferedWriter) - Static method in class org.apache.ctakes.core.cc.property.plaintext.PropertyTextWriter
-
Write a sentence and list of event and anatomical site properties from the document text
- writeTableRow(PreparedStatement, int, Map<? extends AbstractJdbcWriter.FieldInfo, Object>) - Static method in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
Adds a new row of values to a batch in the prepared statement.
- writeToFile(String) - Method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- writeToFormatLucene(String, String, String) - Method in class org.apache.ctakes.dictionary.assertion.CreateAssertionLuceneIndexFromDelimitedFile
-
- writeXMIs() - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds ae that writes an xmi file at the end of the pipeline.
- writeXMIs(String) - Method in class org.apache.ctakes.core.pipeline.PipelineBuilder
-
Adds ae that writes an xmi file at the end of the pipeline.
- wsDotPattern - Static variable in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- wsPattern - Static variable in class org.apache.ctakes.ytex.kernel.BaseClassifierEvaluationParser
-
- WuPalmerMetric - Class in org.apache.ctakes.ytex.kernel.metric
-
- WuPalmerMetric(ConceptSimilarityService) - Constructor for class org.apache.ctakes.ytex.kernel.metric.WuPalmerMetric
-
X
- XCAS - Static variable in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
The name of the XCAS XML scheme.
- XcasAnnotation - Class in org.apache.ctakes.utils.xcas_comparison
-
An XcasAnnotation object represents an element under the CAS
tag in an XCAS file.
- XcasAnnotation() - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Default constructor.
- XcasAnnotation(String) - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasAnnotation
-
Constructs an object with the specified type.
- XcasDiff - Class in org.apache.ctakes.utils.xcas_comparison
-
An XcasDiff object represents the comparison results of
two XCAS files.
- XcasDiff() - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Default constructor.
- XcasDiff(XcasFile, XcasFile) - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasDiff
-
Construct an XCASDiff object from two XcasFile
objects.
- XcasFile - Class in org.apache.ctakes.utils.xcas_comparison
-
An XcasFile wraps all XcasAnnotationss
in it and also contains their position information in terms of
line and column numbers.
- XcasFile() - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Default constructor.
- XcasFile(String) - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Constructs an XcasFile with the specified name.
- XcasFile(File) - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasFile
-
Constructs an XcasFile with the specified name.
- XcasProcessor - Class in org.apache.ctakes.utils.xcas_comparison
-
A SAX parser that parses an XCAS file.
- XcasProcessor() - Constructor for class org.apache.ctakes.utils.xcas_comparison.XcasProcessor
-
Default constructor.
- xleaf - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
- XMI - Static variable in class org.apache.ctakes.assertion.cc.JudgeAttributeInstances
-
The name of the XMI XML scheme.
- XMI_OUTPUT_DIR - Static variable in class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline
-
- XmiCollectionReaderCtakes - Class in org.apache.ctakes.assertion.cr
-
A simple collection reader that reads CASes in XMI format from a directory in the filesystem.
- XmiCollectionReaderCtakes() - Constructor for class org.apache.ctakes.assertion.cr.XmiCollectionReaderCtakes
-
- XmiCollectionReaderCtakes - Class in org.apache.ctakes.core.cr
-
A simple collection reader that reads CASes in XMI format from a directory in the filesystem.
- XmiCollectionReaderCtakes() - Constructor for class org.apache.ctakes.core.cr.XmiCollectionReaderCtakes
-
- xmiDirectory - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- XMIReader - Class in org.apache.ctakes.assertion.eval
-
UIMA CollectionReader that reads in CASes from XMI files.
- XMIReader() - Constructor for class org.apache.ctakes.assertion.eval.XMIReader
-
- XMIReader - Class in org.apache.ctakes.core.cr
-
UIMA CollectionReader that reads in CASes from XMI files.
- XMIReader() - Constructor for class org.apache.ctakes.core.cr.XMIReader
-
- XMIReader - Class in org.apache.ctakes.dependency.parser.ae.util
-
UIMA CollectionReader that reads in CASes from XMI files.
- XMIReader() - Constructor for class org.apache.ctakes.dependency.parser.ae.util.XMIReader
-
- XMIReader - Class in org.apache.ctakes.relationextractor.eval
-
UIMA CollectionReader that reads in CASes from XMI files.
- XMIReader() - Constructor for class org.apache.ctakes.relationextractor.eval.XMIReader
-
- XMIReader() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIReader
-
- XMISerializer - Class in org.apache.ctakes.core.cc
-
- XMISerializer() - Constructor for class org.apache.ctakes.core.cc.XMISerializer
-
- XMISerializer(OutputStream) - Constructor for class org.apache.ctakes.core.cc.XMISerializer
-
- XMIWriter() - Constructor for class org.apache.ctakes.relationextractor.metastasis.MetastasisXmiGenerationPipeline.XMIWriter
-
- XMIWriter() - Constructor for class org.apache.ctakes.temporal.eval.Evaluation_ImplBase.XMIWriter
-
- XmiWriterCasConsumerCtakes - Class in org.apache.ctakes.core.cc
-
A simple CAS consumer that writes the CAS to XMI format.
- XmiWriterCasConsumerCtakes() - Constructor for class org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes
-
- xml - Variable in class org.apache.ctakes.jdl.schema.xdl.LoadType
-
- Xml() - Constructor for class org.apache.ctakes.jdl.schema.xdl.LoadType.Xml
-
- xmlDirectory - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- xmlFormat - Variable in class org.apache.ctakes.temporal.eval.Evaluation_ImplBase
-
- XmlLoader - Class in org.apache.ctakes.jdl.data.loader
-
Loader of XML file.
- XmlLoader(XmlLoadType, Document) - Constructor for class org.apache.ctakes.jdl.data.loader.XmlLoader
-
- XmlLoadType - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for xmlLoadType complex type.
- XmlLoadType() - Constructor for class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
- XmlLoadType.Column - Class in org.apache.ctakes.jdl.schema.xdl
-
Java class for anonymous complex type.
- XMLReader - Class in org.apache.ctakes.assertion.cr
-
- XMLReader() - Constructor for class org.apache.ctakes.assertion.cr.XMLReader
-
- XMLReader - Class in org.apache.ctakes.relationextractor.knowtator
-
- XMLReader() - Constructor for class org.apache.ctakes.relationextractor.knowtator.XMLReader
-
- xpath - Variable in class org.apache.ctakes.jdl.schema.xdl.ColumnXmlLoadType
-
- xroot - Variable in class org.apache.ctakes.jdl.schema.xdl.XmlLoadType
-
- XSD - Static variable in class org.apache.ctakes.jdl.AppJdl
-
- xVals - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
the possible values of X (e.g.
Y
- YES - Static variable in interface org.apache.ctakes.ytex.kernel.ClassifierEvaluationParser
-
- yVals - Variable in class org.apache.ctakes.ytex.kernel.ImputedFeatureEvaluatorImpl.JointDistribution
-
the possible values of Y (e.g.
Z
- Zone - Class in org.apache.ctakes.assertion.zoner.types
-
A document Zone, including its heading
Updated by JCasGen Mon Apr 24 21:42:46 EDT 2017
XML source: /private/tmp/murali/ctakes/ctakes-4.0.0/ctakes-assertion-zoner/target/jcasgen/typesystem.xml
- Zone() - Constructor for class org.apache.ctakes.assertion.zoner.types.Zone
-
Never called.
- Zone(int, TOP_Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Zone
-
Internal - constructor used by generator
- Zone(JCas) - Constructor for class org.apache.ctakes.assertion.zoner.types.Zone
-
- Zone(JCas, int, int) - Constructor for class org.apache.ctakes.assertion.zoner.types.Zone
-
- Zone_Type - Class in org.apache.ctakes.assertion.zoner.types
-
A document Zone, including its heading
Updated by JCasGen Mon Apr 24 21:42:46 EDT 2017
- Zone_Type(JCas, Type) - Constructor for class org.apache.ctakes.assertion.zoner.types.Zone_Type
-
initialize variables to correspond with Cas Type and Features
- ZoneAnnotator - Class in org.mitre.medfacts.uima
-
- ZoneAnnotator() - Constructor for class org.mitre.medfacts.uima.ZoneAnnotator
-
- ZscoreNormalizationExtractor<OUTCOME_T,FOCUS_T extends org.apache.uima.jcas.tcas.Annotation> - Class in org.apache.ctakes.temporal.ae.feature.selection
-
Use z-score to normalize every numerical feature
- ZscoreNormalizationExtractor(String) - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor
-
- ZscoreNormalizationExtractor.ZscoreRunningStat - Class in org.apache.ctakes.temporal.ae.feature.selection
-
- ZscoreRunningStat() - Constructor for class org.apache.ctakes.temporal.ae.feature.selection.ZscoreNormalizationExtractor.ZscoreRunningStat
-
_
- __end - Variable in class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl.LookupHitKey
-
- __index - Variable in class org.apache.ctakes.gui.dictionary.util.RareWordUtil.IndexedRareWord
-
- __start - Variable in class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl.LookupHitKey
-
- __tokenCount - Variable in class org.apache.ctakes.gui.dictionary.util.RareWordUtil.IndexedRareWord
-
- __word - Variable in class org.apache.ctakes.gui.dictionary.util.RareWordUtil.IndexedRareWord
-
- _boundaryWordSet - Variable in class org.apache.ctakes.assertion.util.NegationDepRegex
-
- _dependencies - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _description - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _index - Variable in enum org.apache.ctakes.gui.dictionary.umls.MrconsoIndex
-
- _index - Variable in enum org.apache.ctakes.gui.dictionary.umls.MrstyIndex
-
- _minimumLookupSpan - Variable in class org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator
-
- _name - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _parameterInfoPanel - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _parameterTableModel - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _pipeBitClass - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _pipeBitInfo - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _products - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _tableSqlInfoMap - Variable in class org.apache.ctakes.core.cc.AbstractJdbcWriter
-
- _usables - Variable in class org.apache.ctakes.gui.pipeline.bit.BitInfoPanel
-
- _values - Variable in class org.apache.ctakes.gui.pipeline.bit.parameter.ParameterInfoPanel
-
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