org.apache.ctakes.ytex.kernel

Class CytoscapeHelperImpl

java.lang.Object

org.apache.ctakes.ytex.kernel.CytoscapeHelperImpl

All Implemented Interfaces:

CytoscapeHelper

public class CytoscapeHelperImpl
extends Object
implements CytoscapeHelper

Field Summary

Fields

Modifier and Type	Field and Description
protected ClassifierEvaluationDao	classifierEvaluationDao
protected ConceptDao	conceptDao
protected UMLSDao	umlsDao

Constructor Summary

Constructors

Constructor and Description
CytoscapeHelperImpl()

Method Summary

Modifier and Type	Method and Description
void	exportNetwork(ConceptGraph cg, String corpusName, String conceptGraphName, String conceptSetName, int leafChildrenDepth, BufferedWriter networkData, BufferedWriter nodeData)
void	exportNetwork(String filePrefix, Properties props)
void	exportSubtree(String conceptID, Properties props)
ClassifierEvaluationDao	getClassifierEvaluationDao()
ConceptDao	getConceptDao()
UMLSDao	getUmlsDao()
static void	main(String[] args)
void	setClassifierEvaluationDao(ClassifierEvaluationDao classifierEvaluationDao)
void	setConceptDao(ConceptDao conceptDao)
void	setUmlsDao(UMLSDao umlsDao)
boolean	validateProps(Properties props)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

classifierEvaluationDao

protected ClassifierEvaluationDao classifierEvaluationDao

conceptDao

protected ConceptDao conceptDao

umlsDao

protected UMLSDao umlsDao

Constructor Detail

CytoscapeHelperImpl

public CytoscapeHelperImpl()

Method Detail

main

public static void main(String[] args)
                 throws org.apache.commons.cli.ParseException,
                        IOException

Parameters:

args -

Throws:

org.apache.commons.cli.ParseException

IOException

exportNetwork

public void exportNetwork(ConceptGraph cg,
                          String corpusName,
                          String conceptGraphName,
                          String conceptSetName,
                          int leafChildrenDepth,
                          BufferedWriter networkData,
                          BufferedWriter nodeData)
                   throws IOException

Specified by:

exportNetwork in interface CytoscapeHelper

Throws:

IOException

exportNetwork

public void exportNetwork(String filePrefix,
                          Properties props)
                   throws IOException

Specified by:

exportNetwork in interface CytoscapeHelper

Throws:

IOException

exportSubtree

public void exportSubtree(String conceptID,
                          Properties props)
                   throws IOException

Specified by:

exportSubtree in interface CytoscapeHelper

Throws:

IOException

getClassifierEvaluationDao

public ClassifierEvaluationDao getClassifierEvaluationDao()

getConceptDao

public ConceptDao getConceptDao()

getUmlsDao

public UMLSDao getUmlsDao()

setClassifierEvaluationDao

public void setClassifierEvaluationDao(ClassifierEvaluationDao classifierEvaluationDao)

setConceptDao

public void setConceptDao(ConceptDao conceptDao)

setUmlsDao

public void setUmlsDao(UMLSDao umlsDao)

validateProps

public boolean validateProps(Properties props)

Specified by:

validateProps in interface CytoscapeHelper