org.apache.ctakes.ytex.umls.dao

Interface UMLSDao

All Known Implementing Classes:

UMLSDaoImpl

public interface UMLSDao

Field Summary

Fields

Modifier and Type	Field and Description
static Pattern	cuiPattern pattern to match cuis and parse out their number

Method Summary

Modifier and Type	Method and Description
void	deleteAuiFirstWord()
List<Object[]>	getAllAuiStr(String lastAui) get all aui, str from mrconso
String	getLastAui() Get the 'last' UmlsAuiFirstWord.
Map<String,String>	getNames(List<String> subList)
HashSet<Integer>	getRXNORMCuis() get a set of all cuis in RXNORM.
void	insertAuiFirstWord(List<UmlsAuiFirstWord> listAuiFirstWord)
boolean	isRXNORMCui(String cui)

Field Detail

cuiPattern

static final Pattern cuiPattern

pattern to match cuis and parse out their number

Method Detail

getAllAuiStr

List<Object[]> getAllAuiStr(String lastAui)

get all aui, str from mrconso

deleteAuiFirstWord

void deleteAuiFirstWord()

insertAuiFirstWord

void insertAuiFirstWord(List<UmlsAuiFirstWord> listAuiFirstWord)

getNames

Map<String,String> getNames(List<String> subList)

getLastAui

String getLastAui()

Get the 'last' UmlsAuiFirstWord. We insert them in ascending order of auis.

Returns:

getRXNORMCuis

HashSet<Integer> getRXNORMCuis()

get a set of all cuis in RXNORM. used for DrugNer - need to set the coding scheme to RXNORM. Convert the cui into a numeric representation (chop off the preceding 'C') to save memory.

Returns:

isRXNORMCui

boolean isRXNORMCui(String cui)