org.apache.ctakes.ytex.umls.dao

Class UMLSDaoImpl

java.lang.Object

org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl

All Implemented Interfaces:

UMLSDao

public class UMLSDaoImpl
extends Object
implements UMLSDao

Field Summary

Fields

Modifier and Type	Field and Description
static String[]	EXCLUDE_RELA
static String[]	INCLUDE_REL

Fields inherited from interface org.apache.ctakes.ytex.umls.dao.UMLSDao

cuiPattern

Constructor Summary

Constructors

Constructor and Description
UMLSDaoImpl()

Method Summary

Modifier and Type	Method and Description
void	deleteAuiFirstWord()
List<Object[]>	getAllAuiStr(String lastAui) sets up the umls_aui_fword table.
DataSource	getDataSource()
String	getLastAui() Get the 'last' UmlsAuiFirstWord.
Map<String,String>	getNames(List<String> subList)
HashSet<Integer>	getRXNORMCuis() get a set of all cuis in RXNORM.
org.hibernate.SessionFactory	getSessionFactory()
void	insertAuiFirstWord(List<UmlsAuiFirstWord> listAuiFirstWord)
boolean	isRXNORMCui(String cui)
void	setDataSource(DataSource ds)
void	setSessionFactory(org.hibernate.SessionFactory sessionFactory)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

INCLUDE_REL

public static final String[] INCLUDE_REL

EXCLUDE_RELA

public static final String[] EXCLUDE_RELA

Constructor Detail

UMLSDaoImpl

public UMLSDaoImpl()

Method Detail

getSessionFactory

public org.hibernate.SessionFactory getSessionFactory()

setSessionFactory

public void setSessionFactory(org.hibernate.SessionFactory sessionFactory)

setDataSource

public void setDataSource(DataSource ds)

getDataSource

public DataSource getDataSource()

getAllAuiStr

public List<Object[]> getAllAuiStr(String lastAui)

sets up the umls_aui_fword table.

Specified by:

getAllAuiStr in interface UMLSDao

deleteAuiFirstWord

public void deleteAuiFirstWord()

Specified by:

deleteAuiFirstWord in interface UMLSDao

insertAuiFirstWord

public void insertAuiFirstWord(List<UmlsAuiFirstWord> listAuiFirstWord)

Specified by:

insertAuiFirstWord in interface UMLSDao

getNames

public Map<String,String> getNames(List<String> subList)

Specified by:

getNames in interface UMLSDao

getLastAui

public String getLastAui()

Description copied from interface: UMLSDao

Get the 'last' UmlsAuiFirstWord. We insert them in ascending order of auis.

Specified by:

getLastAui in interface UMLSDao

Returns:

getRXNORMCuis

public HashSet<Integer> getRXNORMCuis()

Description copied from interface: UMLSDao

get a set of all cuis in RXNORM. used for DrugNer - need to set the coding scheme to RXNORM. Convert the cui into a numeric representation (chop off the preceding 'C') to save memory.

Specified by:

getRXNORMCuis in interface UMLSDao

Returns:

isRXNORMCui

public boolean isRXNORMCui(String cui)

Specified by:

isRXNORMCui in interface UMLSDao