org.apache.ctakes.assertion.medfacts.i2b2.api

Class CharacterOffsetToLineTokenConverterCtakesImpl

java.lang.Object

org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl

All Implemented Interfaces:

CharacterOffsetToLineTokenConverter

public class CharacterOffsetToLineTokenConverterCtakesImpl
extends Object
implements CharacterOffsetToLineTokenConverter

Field Summary

Fields

Modifier and Type	Field and Description
protected TreeMap<Integer,Sentence>	beginTreeMap
protected org.apache.uima.jcas.JCas	jcas
protected org.apache.log4j.Logger	logger
protected Map<Sentence,List<BaseToken>>	sentenceToTokenNumberMap
protected TreeSet<Integer>	tokenBeginEndTreeSet

Constructor Summary

Constructors

Constructor and Description
CharacterOffsetToLineTokenConverterCtakesImpl()
CharacterOffsetToLineTokenConverterCtakesImpl(org.apache.uima.jcas.JCas jcas)

Method Summary

Modifier and Type	Method and Description
int	adjustOffsetToBestMatch(int original)
void	buildSentenceBoundaryMap()
protected void	buildSentenceToTokenNumberMap()
void	buildTokenBoundaryMap()
List<LineAndTokenPosition>	calculateBeginAndEndOfConcept(ApiConcept problem)
List<LineAndTokenPosition>	calculateBeginAndEndOfConcept(int problemBegin, int problemEnd)
LineAndTokenPosition	convert(int characterOffset)
LineAndTokenPosition	convertCharacterOffsetToLineToken(int characterOffset)
Sentence	findPreviousOrCurrentSentence(int characterOffset)
BaseToken	getNextNonEOLToken(org.apache.uima.cas.FSIterator<org.apache.uima.jcas.tcas.Annotation> tokensInSentenceIterator)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected org.apache.log4j.Logger logger

jcas

protected org.apache.uima.jcas.JCas jcas

beginTreeMap

protected TreeMap<Integer,Sentence> beginTreeMap

tokenBeginEndTreeSet

protected TreeSet<Integer> tokenBeginEndTreeSet

sentenceToTokenNumberMap

protected Map<Sentence,List<BaseToken>> sentenceToTokenNumberMap

Constructor Detail

CharacterOffsetToLineTokenConverterCtakesImpl

public CharacterOffsetToLineTokenConverterCtakesImpl()

CharacterOffsetToLineTokenConverterCtakesImpl

public CharacterOffsetToLineTokenConverterCtakesImpl(org.apache.uima.jcas.JCas jcas)

Method Detail

buildSentenceBoundaryMap

public void buildSentenceBoundaryMap()

buildTokenBoundaryMap

public void buildTokenBoundaryMap()

buildSentenceToTokenNumberMap

protected void buildSentenceToTokenNumberMap()

findPreviousOrCurrentSentence

public Sentence findPreviousOrCurrentSentence(int characterOffset)

convert

public LineAndTokenPosition convert(int characterOffset)

adjustOffsetToBestMatch

public int adjustOffsetToBestMatch(int original)

convertCharacterOffsetToLineToken

public LineAndTokenPosition convertCharacterOffsetToLineToken(int characterOffset)

getNextNonEOLToken

public BaseToken getNextNonEOLToken(org.apache.uima.cas.FSIterator<org.apache.uima.jcas.tcas.Annotation> tokensInSentenceIterator)

calculateBeginAndEndOfConcept

public List<LineAndTokenPosition> calculateBeginAndEndOfConcept(ApiConcept problem)

calculateBeginAndEndOfConcept

public List<LineAndTokenPosition> calculateBeginAndEndOfConcept(int problemBegin,
                                                                int problemEnd)