org.apache.ctakes.temporal.ae

Class THYMEKnowtatorXMLReader

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

org.apache.ctakes.temporal.ae.THYMEKnowtatorXMLReader

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

@PipeBitInfo(name="Knowtator XML Reader (THYME)",
             description="Reads annotations from THYME schema Knowtator XML files in a directory.",
             role=SPECIAL,
             products={IDENTIFIED_ANNOTATION,EVENT,TIMEX,LOCATION_RELATION,DEGREE_RELATION,TEMPORAL_RELATION})
public class THYMEKnowtatorXMLReader
extends SHARPKnowtatorXMLReader

Field Summary

Fields

Modifier and Type	Field and Description
protected File	knowtatorXMLDirectory
static String	PARAM_KNOWTATOR_XML_DIRECTORY

Fields inherited from class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

PARAM_SET_DEFAULTS, PARAM_TEXT_DIRECTORY

Constructor Summary

Constructors

Constructor and Description
THYMEKnowtatorXMLReader()

Method Summary

Modifier and Type	Method and Description
protected String[]	getAnnotatorNames() Returns the names of the annotators in the Knowtator files that represent the gold standard
static org.apache.uima.analysis_engine.AnalysisEngineDescription	getDescription(File knowtatorXMLDirectory)
protected URI	getKnowtatorURI(org.apache.uima.jcas.JCas jCas) Get the URI for the Knowtator XML file that should be loaded
protected URI	getTextURI(org.apache.uima.jcas.JCas jCas) Get the URI that the text in this class was loaded from
static void	main(String[] args) Just runs reader over files.

Methods inherited from class org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader

process

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger, initialize

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PARAM_KNOWTATOR_XML_DIRECTORY

public static final String PARAM_KNOWTATOR_XML_DIRECTORY

See Also:

Constant Field Values

knowtatorXMLDirectory

protected File knowtatorXMLDirectory

Constructor Detail

THYMEKnowtatorXMLReader

public THYMEKnowtatorXMLReader()

Method Detail

getDescription

public static org.apache.uima.analysis_engine.AnalysisEngineDescription getDescription(File knowtatorXMLDirectory)
                                                                                throws org.apache.uima.resource.ResourceInitializationException

Throws:

org.apache.uima.resource.ResourceInitializationException

getTextURI

protected URI getTextURI(org.apache.uima.jcas.JCas jCas)

Description copied from class: SHARPKnowtatorXMLReader

Get the URI that the text in this class was loaded from

Overrides:

getTextURI in class SHARPKnowtatorXMLReader

getKnowtatorURI

protected URI getKnowtatorURI(org.apache.uima.jcas.JCas jCas)

Description copied from class: SHARPKnowtatorXMLReader

Get the URI for the Knowtator XML file that should be loaded

Overrides:

getKnowtatorURI in class SHARPKnowtatorXMLReader

getAnnotatorNames

protected String[] getAnnotatorNames()

Description copied from class: SHARPKnowtatorXMLReader

Returns the names of the annotators in the Knowtator files that represent the gold standard

Overrides:

getAnnotatorNames in class SHARPKnowtatorXMLReader

main

public static void main(String[] args)
                 throws Exception

Just runs reader over files. Useful primarily for debugging annotations.

Throws:

Exception