Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DONOR_DEPPATH |
"donor_deppath" |
public static final String |
DONOR_DEPTOK |
"donor_depsrl" |
public static final String |
DONOR_OR |
"donor_or" |
public static final String |
DONOR_SRLARG |
"donor_srlarg" |
public static final String |
DONOR_TOKEN |
"donor_token" |
public static final String |
FAMILY_DEPPATH |
"family_deppath" |
public static final String |
FAMILY_DEPTOK |
"family_depsrl" |
public static final String |
FAMILY_OR |
"family_or" |
public static final String |
FAMILY_SRLARG |
"family_srlarg" |
public static final String |
FAMILY_TOKEN |
"family_token" |
public static final String |
OTHER_DEPPATH |
"other_deppath" |
public static final String |
OTHER_DEPTOK |
"other_depsrl" |
public static final String |
OTHER_OR |
"other_or" |
public static final String |
OTHER_SRLARG |
"other_srlarg" |
public static final String |
OTHER_TOKEN |
"other_token" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUT_DIRECTORY_NAME |
"outputDirectoryName" |
public static final String |
PARAM_XML_SCHEME_NAME |
"xmlSchemeName" |
public static final String |
XCAS |
"XCAS" |
public static final String |
XMI |
"XMI" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_INPUTDIR |
"InputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FNMATCH |
"fnMatch" |
public static final String |
PARAM_INPUTDIR |
"inputDir" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SET_DEFAULTS |
"SetDefaults" |
public static final String |
PARAM_TEXT_DIRECTORY |
"TextDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FAILUNKNOWN |
"FailOnUnknownType" |
public static final String |
PARAM_INPUTDIR |
"InputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FILES |
"files" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ASSERTION_MODEL_PARAM |
"assertionModelResource" |
public static final String |
CUE_MODEL_PARAM |
"cueModelResource" |
public static final String |
ENABLED_FEATURES_PARAM |
"enabledFeaturesResource" |
public static final String |
POS_MODEL_PARAM |
"posModelResource" |
public static final String |
SCOPE_MODEL_PARAM |
"scopeModelResource" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
REVERSE_LOOKUP_PROBLEM_TUI |
"T019" |
public static final String |
REVERSE_LOOKUP_TEST_TUI |
"T059" |
public static final String |
REVERSE_LOOKUP_TREATMENT_TUI |
"T116" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_INPUT_FILE |
"INPUT_FILE" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
FEATURE_SELECTION_NAME |
"SelectNeighborFeatures" |
public static final String |
FILE_TO_DOMAIN_MAP |
"mapTrainFileToDomain" |
public static final String |
PARAM_FEATURE_CONFIG |
"FEATURE_CONFIG" |
public static final String |
PARAM_FEATURE_SELECTION_THRESHOLD |
"WhetherToDoFeatureSelection" |
public static final String |
PARAM_FEATURE_SELECTION_URI |
"FeatureSelectionURI" |
public static final String |
PARAM_GOLD_VIEW_NAME |
"GoldViewName" |
public static final String |
PARAM_PORTION_OF_DATA_TO_USE |
"PortionOfDataToUse" |
public static final String |
PARAM_PRINT_ERRORS |
"PrintErrors" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_DEFAULT_EXAMPLE |
"ProbabilityOfKeepingADefaultExample" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NEGATED |
"NEGATED" |
public static final String |
NOT_NEGATED |
"NOT_NEGATED" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_NAME_DECODING_INPUT_DIRECTORY |
"decoding-input-directory" |
public static final String |
PARAM_NAME_DECODING_OUTPUT_DIRECTORY |
"decoding-output-directory" |
public static final String |
PARAM_NAME_MODEL_DIRECTORY |
"model-directory" |
public static final String |
PARAM_NAME_TRAINING_INPUT_DIRECTORY |
"training-input-directory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEFAULT_NAME |
"BrownCluster" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DOMAIN_ADAPTATION_ALGORITHM |
"FEDA" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"outputDir" |
public static final String |
PARAM_SEMDIR |
"semDir" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
UP_NODES |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
I2B2_TEST |
"/projects/data/assertion/data/preprocessed_data/i2b2/test" |
protected static final String |
MIPACQ_TEST |
"/projects/data/assertion/data/preprocessed_data/mipacq/test" |
protected static final String |
NEGEX_TEST |
"/projects/data/assertion/data/preprocessed_data/negex" |
protected static final String |
SHARP_TEST |
"/projects/data/assertion/data/preprocessed_data/sharp/test" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
I2B2_MIPACQ_NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/i2b2train+mipacqtrain+negextest" |
protected static final String |
I2B2_MODEL |
"../ctakes-assertion-res/resources/model/i2b2train" |
protected static final String |
I2B2_TRAIN |
"/projects/data/assertion/data/preprocessed_data/i2b2/train" |
protected static final String |
MIPACQ_MODEL |
"../ctakes-assertion-res/resources/model/mipacqtrain" |
protected static final String |
MIPACQ_TRAIN |
"/projects/data/assertion/data/preprocessed_data/mipacq/train" |
protected static final String |
NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/negextest" |
protected static final String |
NEGEX_TRAIN |
"/projects/data/assertion/data/preprocessed_data/negex" |
protected static final String |
SHARP_I2B2_MIPACQ_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train+mipacqtrain" |
protected static final String |
SHARP_I2B2_MIPACQ_NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex" |
protected static final String |
SHARP_I2B2_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train" |
protected static final String |
SHARP_I2B2_NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train+negextest" |
protected static final String |
SHARP_MIPACQ_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+mipacqtrain" |
protected static final String |
SHARP_MIPACQ_NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+mipacqtrain+negextest" |
public static final String |
SHARP_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain" |
protected static final String |
SHARP_NEGEX_MODEL |
"../ctakes-assertion-res/resources/model/sharptrain+negextest" |
protected static final String |
SHARP_TRAIN |
"/projects/data/assertion/data/preprocessed_data/sharp/train" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
I2B2_TEST |
"/projects/data/assertion/data/preprocessed_data/i2b2/test" |
protected static final String |
MIPACQ_TEST |
"/projects/data/assertion/data/preprocessed_data/mipacq/test" |
protected static final String |
NEGEX_TEST |
"/projects/data/assertion/data/preprocessed_data/negex" |
protected static final String |
SHARP_TEST |
"/projects/data/assertion/data/preprocessed_data/sharp/test" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
I2B2_FEDA |
"../ctakes-assertion-res/resources/model/i2b2train-feda" |
protected static final String |
I2B2_MIPACQ_NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/i2b2train+mipacqtrain+negextest-feda" |
protected static final String |
I2B2_TRAIN |
"/projects/data/assertion/data/preprocessed_data/i2b2/train" |
protected static final String |
MIPACQ_FEDA |
"../ctakes-assertion-res/resources/model/mipacqtrain-feda" |
protected static final String |
MIPACQ_TRAIN |
"/projects/data/assertion/data/preprocessed_data/mipacq/train" |
protected static final String |
NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/negextest-feda" |
protected static final String |
NEGEX_TRAIN |
"/projects/data/assertion/data/preprocessed_data/negex" |
public static final String |
SHARP_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain-feda" |
protected static final String |
SHARP_I2B2_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train-feda" |
protected static final String |
SHARP_I2B2_MIPACQ_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train+mipacqtrain-feda" |
protected static final String |
SHARP_I2B2_MIPACQ_NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex-feda" |
protected static final String |
SHARP_I2B2_NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+i2b2train+negextest-feda" |
protected static final String |
SHARP_MIPACQ_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+mipacqtrain-feda" |
protected static final String |
SHARP_MIPACQ_NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+mipacqtrain+negextest-feda" |
protected static final String |
SHARP_NEGEX_FEDA |
"../ctakes-assertion-res/resources/model/sharptrain+negextest-feda" |
protected static final String |
SHARP_TRAIN |
"/projects/data/assertion/data/preprocessed_data/sharp/train" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
BASE_DIRECTORY |
"/projects/data/assertion/" |
public static final String |
CORPUS_WO_GOLD_STD_TO_RUN_THROUGH_CTAKES |
"/projects/data/assertion/data/ActiveLearning/plaintext" |
public static final String |
DATA_DIR |
"/projects/data/assertion/data/" |
public static final String |
I2B2_2010_CORPUS |
"/projects/data/assertion/data/gold_standard/i2b2Challenge2010/Data/i2b2Challenge2010AllTrain/" |
public static final String |
I2B2_2010_TEST_CORPUS |
"/projects/data/assertion/data/gold_standard/i2b2Challenge2010/Data/Test/reports/" |
public static final String |
MiPACQ_CORPUS |
"/projects/data/assertion/data/gold_standard/mipacq/" |
public static final String |
NEGEX_CORPUS |
"/projects/data/assertion/data/gold_standard/negex/Annotations-1-120-random.txt" |
public static final String |
NEGEX_CORPUS_PREPROCESSED |
"/projects/data/assertion/data/preprocessed_data/negex/all" |
public static final String |
SHARP_SEED_CORPUS |
"/projects/data/assertion/data/gold_standard/sharp/Seed Corpus/" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CHUNKER_CREATOR_CLASS_PARAM |
"ChunkCreatorClass" |
public static final String |
CHUNKER_MODEL_FILE_PARAM |
"ChunkerModelFile" |
public static final String |
PARAM_CHUNKER_CREATOR_CLASS |
"ChunkCreatorClass" |
public static final String |
PARAM_CHUNKER_MODEL_FILE |
"ChunkerModelFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_CHUNK_PATTERN |
"ChunkPattern" |
public static final String |
PARAM_EXTEND_TO_INCLUDE_TOKEN |
"IndexOfTokenToInclude" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_MODEL_FILENAME |
"MODEL_FILENAME" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_PARSERMODEL |
"ParserModel" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
SECTION_TYPES_DESC |
"path to a BSV file containing a list of regular expressions and corresponding section types." |
public static final String |
SECTION_TYPES_PATH |
"SectionsBsv" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
DEFAULT_SECTION_FILE_NAME |
"org/apache/ctakes/core/sections/ccda_sections.txt" |
public static final String |
PARAM_COMMENT |
"#" |
public static final String |
PARAM_FIELD_SEPERATOR |
"," |
public static final String |
PARAM_SECTIONS_FILE |
"sections_file" |
public static final String |
SIMPLE_SEGMENT |
"SIMPLE_SEGMENT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DEST_CLASS |
"destObjClass" |
public static final String |
PARAM_METHOD_MAP |
"dataBindMap" |
public static final String |
PARAM_SOURCE_CLASS |
"srcObjClass" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
LIST_TYPES_PATH |
"LIST_TYPES_PATH" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
OVERLAP_A_ENV_B |
3 |
public static final byte |
OVERLAP_B_ENV_A |
4 |
public static final byte |
OVERLAP_EXACT |
2 |
public static final byte |
OVERLAP_NONE |
0 |
public static final byte |
OVERLAP_PARTIAL |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAGRAPH_TYPES_DESC |
"path to a file containing a list of regular expressions and corresponding paragraph types." |
public static final String |
PARAGRAPH_TYPES_PATH |
"PARAGRAPH_TYPES_PATH" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DIVIDER_LINE_NAME |
"DIVIDER_LINE" |
public static final String |
PARAM_TAG_DIVIDERS |
"TagDividers" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SD_MODEL_FILE |
"SentenceModelFile" |
public static final String |
PARAM_SEGMENTS_TO_SKIP |
"SegmentsToSkip" |
public static final String |
SD_MODEL_FILE_PARAM |
"SentenceModelFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FEAT_CONFIG |
"FeatureConfiguration" |
public static final String |
PARAM_TOKEN_FILE |
"TokenFilename" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SET_DEFAULTS |
"SetDefaults" |
public static final String |
PARAM_TEXT_DIRECTORY |
"TextDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SEGMENT_ID |
"SegmentID" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_IS_START |
"IS_START" |
public static final String |
PARAM_LOGGER_NAME |
"LOGGER_NAME" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SEGMENTS_TO_SKIP |
"SegmentsToSkip" |
public static final int |
TOKEN_CAP_ALL |
3 |
public static final int |
TOKEN_CAP_FIRST_ONLY |
1 |
public static final int |
TOKEN_CAP_MIXED |
2 |
public static final int |
TOKEN_CAP_NONE |
0 |
public static final int |
TOKEN_NUM_POS_FIRST |
1 |
public static final int |
TOKEN_NUM_POS_LAST |
3 |
public static final int |
TOKEN_NUM_POS_MIDDLE |
2 |
public static final int |
TOKEN_NUM_POS_NONE |
0 |
public static final int |
TOKEN_NUM_TYPE_DECIMAL |
2 |
public static final int |
TOKEN_NUM_TYPE_INTEGER |
1 |
public static final int |
TOKEN_NUM_TYPE_UNKNOWN |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SEGMENTS_TO_SKIP |
"SegmentsToSkip" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DB_CONN_RESRC |
"DbConnResrcName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_VECTOR_TABLE |
"VectorTable" |
protected static final String |
SPAN_END_LABEL |
"END" |
protected static final String |
SPAN_START_LABEL |
"START" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_WORD_FREQ_FILE |
"TokenFreqFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ENTITY_FILL |
"ENTITY_FILL" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DESC_INPUTDIR |
"Directory for all input files." |
public static final String |
DESC_LOOKUP_XML |
"Path to the xml file containing information for dictionary lookup configuration." |
public static final String |
DESC_OUTPUTDIR |
"Directory for all output files." |
public static final String |
DESC_PIPER |
"Location of a Piper File." |
public static final String |
DESC_SUBDIR |
"SubDirectory for files." |
public static final String |
OPTION_INPUTDIR |
"-i" |
public static final String |
OPTION_LOOKUP_XML |
"-l" |
public static final String |
OPTION_OUTPUTDIR |
"-o" |
public static final String |
OPTION_PIPER |
"-p" |
public static final String |
OPTION_SUBDIR |
"-s" |
public static final String |
PARAM_INPUTDIR |
"InputDirectory" |
public static final String |
PARAM_LOOKUP_XML |
"LookupXml" |
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
public static final String |
PARAM_PIPER |
"Piper" |
public static final String |
PARAM_SUBDIR |
"SubDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ENCODING |
"Encoding" |
public static final String |
PARAM_EXTENSIONS |
"Extensions" |
public static final String |
PARAM_INPUTDIR |
"InputDirectory" |
public static final String |
PARAM_LANGUAGE |
"Language" |
public static final String |
PARAM_NUMREADS |
"NumberOfIterations" |
public static final String |
PARAM_RECURSE |
"Recurse" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ENCODING |
"Encoding" |
public static final String |
PARAM_EXTENSIONS |
"Extensions" |
public static final String |
PARAM_LANGUAGE |
"Language" |
public static final String |
PARAM_RECURSE |
"Recurse" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ENCODING |
"Encoding" |
public static final String |
PARAM_EXTENSIONS |
"Extensions" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DB_CONN_RESRC |
"DbConnResrcName" |
public static final String |
PARAM_DOCID_COLS |
"DocIdColNames" |
public static final String |
PARAM_DOCID_DELIMITER |
"DocIdDelimiter" |
public static final String |
PARAM_DOCTEXT_COL |
"DocTextColName" |
public static final String |
PARAM_SQL |
"SqlStatement" |
public static final String |
PARAM_VALUE_FILE_RESRC |
"ValueFileResrcName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_COMMENT_STRING |
"CommentString" |
public static final String |
PARAM_ID_DELIMETER |
"IdDelimeter" |
public static final String |
PARAM_IGNORE_BLANK_LINES |
"IgnoreBlankLines" |
public static final String |
PARAM_INPUT_FILE_NAME |
"InputFileName" |
public static final String |
PARAM_LANGUAGE |
"Language" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
CHARS_PER_WORD |
6 |
public static final String |
PARAM_FIELD_NAME |
"FieldName" |
public static final String |
PARAM_INDEX_DIR |
"IndexDirectory" |
public static final String |
PARAM_MAX_WORDS |
"MaxWords" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FILES |
"files" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FAILUNKNOWN |
"FailOnUnknownType" |
public static final String |
PARAM_INPUTDIR |
"InputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FILES |
"files" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
FAMILY_HISTORY_STATUS |
2 |
public static final int |
HISTORY_STATUS |
1 |
public static final int |
PROBABLE_STATUS |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
CAPS_ALL |
4 |
public static final byte |
CAPS_FIRST_ONLY |
3 |
public static final byte |
CAPS_MIXED |
2 |
public static final byte |
CAPS_NONE |
1 |
public static final byte |
CAPS_UNKNOWN |
0 |
public static final byte |
NUM_FIRST |
1 |
public static final byte |
NUM_LAST |
3 |
public static final byte |
NUM_MIDDLE |
2 |
public static final byte |
NUM_NONE |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
CAPS_ALL |
4 |
public static final byte |
CAPS_FIRST_ONLY |
3 |
public static final byte |
CAPS_MIXED |
2 |
public static final byte |
CAPS_NONE |
1 |
public static final byte |
CAPS_UNKNOWN |
0 |
public static final byte |
NUM_FIRST |
1 |
public static final byte |
NUM_LAST |
3 |
public static final byte |
NUM_MIDDLE |
2 |
public static final byte |
NUM_NONE |
0 |
public static final byte |
TYPE_CONTRACTION |
5 |
public static final byte |
TYPE_EOL |
4 |
public static final byte |
TYPE_NUMBER |
2 |
public static final byte |
TYPE_PUNCT |
3 |
public static final byte |
TYPE_SYMBOL |
6 |
public static final byte |
TYPE_UNKNOWN |
0 |
public static final byte |
TYPE_WORD |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
segModelPath |
"/org/apache/ctakes/core/segdetect/model.jar" |
public static final String |
sentModelPath |
"/org/apache/ctakes/core/sentdetect/model.jar" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_PARAMETERS |
"No Parameters." |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DRIVER_CLASS |
"DriverClassName" |
public static final String |
PARAM_ISOLATION |
"TransactionIsolation" |
public static final String |
PARAM_KEEP_ALIVE |
"KeepConnectionAlive" |
public static final String |
PARAM_PASSWORD |
"Password" |
public static final String |
PARAM_URL |
"URL" |
public static final String |
PARAM_USERNAME |
"Username" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_SPLIT |
"n" |
public static final String |
SPLIT |
"s" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_PREFIX |
"prefix" |
public static final String |
PARAM_SUFFIX |
"suffix" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_DOCUMENT_ID |
"UnknownDocument" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW_NAME |
"GoldViewName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEFAULT_PAR_SIM |
0.5 |
public static final boolean |
DEFAULT_SCORE_ALL |
false |
public static final int |
DEFAULT_SENT_DIST |
5 |
public static final String |
IDENTITY_RELATION |
"Identity" |
public static final String |
PARAM_PAR_SIM |
"PararaphSimilarity" |
public static final String |
PARAM_SCORE_ALL |
"ScoreAllPairs" |
public static final String |
PARAM_SENT_DIST |
"SentenceDistance" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"-NONE-" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE |
"ProbabilityOfKeepingANegativeExample" |
public static final String |
PARAM_USE_EXISTING_ENCODERS |
"UseExistingEncoders" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CLUSTER_RELATION_CATEGORY |
"CoreferenceClusterMember" |
public static final String |
NO_RELATION_CATEGORY |
"-NONE-" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE |
"ProbabilityOfKeepingANegativeExample" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_COGVED |
"cogVeds" |
public static final String |
PARAM_MODAL_ADJ |
"modalAdj" |
public static final String |
PARAM_OTHER_VERB |
"otherVerbs" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_STOPWORDS_FILE |
"StopFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_COREF_MODEL |
"ModelFile" |
public static final String |
PARAM_FRAGS_FILENAME |
"FragsFile" |
public static final String |
PARAM_STOPWORDS_FILENAME |
"StopWords" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEFAULT_SIM |
0.5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEFAULT_SIM |
0.5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FRAGS |
"treeFrags" |
public static final String |
PARAM_GOLD_DIR |
"goldStandardDir" |
public static final String |
PARAM_OUTPUT_DIR |
"outputDir" |
public static final String |
PARAM_STOPS |
"stopWords" |
public static final String |
PARAM_TREES |
"writeTrees" |
public static final String |
PARAM_VECTORS |
"writeVectors" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUT_DIRECTORY |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DROP_ELEMENTS |
"Dropout" |
public static final String |
PARAM_GOLD_VIEW |
"GoldViewName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldViewName" |
public static final String |
PARAM_PSEUDO_GOLD_VIEW |
"PseudoViewName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldViewName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
COREF_THRESHOLD |
0.5 |
public static final String |
DEM |
"dem" |
public static final String |
NE |
"ne" |
public static final int |
NEDIST |
20 |
public static final int |
PRODIST |
3 |
public static final String |
PRON |
"pronoun" |
public static final int |
SENTDIST |
20 |
public static final int |
TOKDIST |
600 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEFAULT_MODEL_FILE_NAME |
"org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar" |
public static final String |
ENG_LEMMATIZER_DATA_FILE |
"org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar" |
public static final String |
PARAM_LEMMATIZER_DATA_FILE |
"LemmatizerDataFile" |
public static final String |
PARAM_PARSER_MODEL_FILE_NAME |
"ParserModelFileName" |
public static final String |
PARAM_USE_LEMMATIZER |
"UseLemmatizer" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEFAULT_PRED_MODEL_FILE_NAME |
"org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar" |
public static final String |
DEFAULT_ROLE_MODEL_FILE_NAME |
"org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar" |
public static final String |
DEFAULT_SRL_MODEL_FILE_NAME |
"org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar" |
public static final String |
PARAM_LEMMATIZER_DATA_FILE |
"LemmatizerDataFile" |
public static final String |
PARAM_PARSER_MODEL_FILE_NAME |
"ParserModelFileName" |
public static final String |
PARAM_PRED_MODEL_FILE_NAME |
"ParserPredFileName" |
public static final String |
PARAM_ROLE_MODEL_FILE_NAME |
"ParserRoleFileName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEP_NAME |
"ClearNLPDependencyParser" |
public static final String |
LVG_BASE_TOKEN_ANNOTATOR_PATH |
"desc/analysis_engine/LvgBaseTokenAnnotator.xml" |
public static final String |
POS_TAGGER_PATH |
"../ctakes-pos-tagger/desc/POSTagger.xml" |
public static final String |
SENTENCE_DETECTOR_PATH |
"../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml" |
public static final String |
SIMPLE_SEGMENTER_PATH |
"../ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml" |
public static final String |
SRL_NAME |
"ClearNLPSRL" |
public static final String |
TOKENIZER_PATH |
"../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FILES |
"files" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEPENDENCY_FILE_PARAM |
"DependencyFile" |
public static final String |
INPUT_FORMAT_PARAM |
"InputFormat" |
public static final String |
TRAINING_MODE_PARAM |
"TrainingMode" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CUE_PHRASE_CATEGORY_FIELD_NAME |
"cuePhraseCategory" |
public static final String |
CUE_PHRASE_FAMILY_FIELD_NAME |
"cuePhraseFamily" |
public static final String |
CUE_PHRASE_FIELD_NAME |
"cuePhrase" |
public static final String |
CUE_PHRASE_FIRST_WORD_FIELD_NAME |
"cuePhraseFirstWord" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
EQ_OP |
0 |
public static final int |
FLOAT_TYPE |
1 |
public static final int |
GT_OP |
3 |
public static final int |
GTEQ_OP |
4 |
public static final int |
INTEGER_TYPE |
0 |
public static final int |
LT_OP |
1 |
public static final int |
LTEQ_OP |
2 |
public static final int |
STRING_TYPE |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CUE_PHRASE_CATEGORY_FIELD_NAME |
"cuePhraseCategory" |
public static final String |
CUE_PHRASE_FAMILY_FIELD_NAME |
"cuePhraseFamily" |
public static final String |
CUE_PHRASE_FIELD_NAME |
"cuePhrase" |
public static final String |
CUE_PHRASE_FIRST_WORD_FIELD_NAME |
"cuePhraseFirstWord" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
UMLSADDR_PARAM |
"ctakes.umlsaddr" |
public static final String |
UMLSPW_PARAM |
"ctakes.umlspw" |
public static final String |
UMLSUSER_PARAM |
"ctakes.umlsuser" |
public static final String |
UMLSVENDOR_PARAM |
"ctakes.umlsvendor" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CTX_KEY_WINDOW_ANNOTATIONS |
"WINDOW_ANNOTATIONS" |
public static final String |
LT_KEY_USE_FOR_LOOKUP |
"USE_FOR_LOOKUP" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
AND_RELATION |
1 |
public static final int |
OR_RELATION |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
EQ_OP |
0 |
public static final int |
GT_OP |
3 |
public static final int |
GTEQ_OP |
4 |
public static final int |
LT_OP |
1 |
public static final int |
LTEQ_OP |
2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEFAULT_DICT_DESC_PATH |
"org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml" |
public static final String |
DEFAULT_EXCLUSION_TAGS |
"VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,IN,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB" |
public static final String |
DEFAULT_LOOKUP_WINDOW |
"org.apache.ctakes.typesystem.type.textspan.Sentence" |
public static final int |
DEFAULT_MINIMUM_SPAN |
3 |
public static final String |
DICTIONARY_DESCRIPTOR_KEY |
"DictionaryDescriptor" |
public static final String |
PARAM_EXC_TAGS_KEY |
"exclusionTags" |
public static final String |
PARAM_MIN_SPAN_KEY |
"minimumSpan" |
public static final String |
PARAM_WINDOW_ANNOT_KEY |
"windowAnnotations" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PREFERRED_TERM_UNKNOWN |
"Unknown Preferred Term" |
public static final String |
PREFTERM |
"PREFTERM" |
public static final String |
TUI |
"TUI" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
RARE_WORD_TABLE |
"rareWordTable" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
JDBC_DRIVER |
"jdbcDriver" |
public static final String |
JDBC_PASS |
"jdbcPass" |
public static final String |
JDBC_URL |
"jdbcUrl" |
public static final String |
JDBC_USER |
"jdbcUser" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PASS_PARAM |
"umlsPass" |
public static final String |
URL_PARAM |
"umlsUrl" |
public static final String |
USER_PARAM |
"umlsUser" |
public static final String |
VENDOR_PARAM |
"umlsVendor" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SEGMENTS_TO_SKIP |
"sectionOverrideSet" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SEGMENTS_MEDICATION_RELATED |
"medicationRelatedSection" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NEGATION_IND_FSM_CLASS |
"NegationIndicatorFSMClass" |
public static final String |
PARAM_ANNOTATION_TYPE |
"AnnotationType" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUTDIR |
"OutputDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DECREASE_STATUS |
"decrease" |
public static final String |
INCREASE_STATUS |
"increase" |
public static final String |
MAXIMUM_STATUS |
"maximum" |
public static final String |
NOCHANGE_STATUS |
"noChange" |
public static final String |
START_STATUS |
"start" |
public static final String |
STOP_STATUS |
"stop" |
public static final String |
SUMMATION_STATUS |
"add" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
AEROSOL |
"aerosol" |
public static final String |
CAPSULE |
"capsule" |
public static final String |
CREAM |
"cream" |
public static final String |
ELIXIR |
"elixir" |
public static final String |
EMULSION |
"emulsion" |
public static final String |
ENEMA |
"enema" |
public static final String |
GEL |
"gel" |
public static final String |
IMPLANT |
"implant" |
public static final String |
INHALANT |
"inhalant" |
public static final String |
INJECTION |
"injection" |
public static final String |
LIQUID |
"liquid" |
public static final String |
LOTION |
"lotion" |
public static final String |
LOZENGE |
"lozenge" |
public static final String |
OINTMENT |
"ointment" |
public static final String |
PATCH |
"patch" |
public static final String |
PILL |
"pill" |
public static final String |
POWDER |
"powder" |
public static final String |
SHAMPOO |
"shampoo" |
public static final String |
SOAP |
"soap" |
public static final String |
SOLUTION |
"solution" |
public static final String |
SPRAY |
"spray" |
public static final String |
SUPPOSITORY |
"suppository" |
public static final String |
SYRINGE |
"syringe" |
public static final String |
SYRUP |
"syrup" |
public static final String |
TABLET |
"tablet" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ASNEEDED |
"as-needed" |
public static final String |
DAILY |
"day" |
public static final String |
EVERYOTHERDAY |
"every-other-day" |
public static final String |
HOURLY |
"hour" |
public static final String |
MONTHLY |
"month" |
public static final String |
OTHER |
"other" |
public static final String |
WEEKLY |
"week" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GASTRIC |
"Enteral_Gastric" |
public static final String |
INTRAARTERIAL |
"Parenteral_Intra-arterial" |
public static final String |
INTRACARDIAC |
"Parenteral_Intracardiac" |
public static final String |
INTRAMUSCULAR |
"Parenteral_Intramuscular" |
public static final String |
INTRAPERITONEAL |
"Parenteral_Intraperitoneal" |
public static final String |
INTRATHECAL |
"Parenteral_Intrathecal" |
public static final String |
INTRAVENOUS |
"Parenteral_Intravenous" |
public static final String |
ORAL |
"Enteral_Oral" |
public static final String |
RECTAL |
"Enteral_Rectal" |
public static final String |
SUBCUTANEOUS |
"Parenteral_Subcutaneous" |
public static final String |
TOPICAL |
"Topical" |
public static final String |
TRANSDERMAL |
"Parenteral_Transdermal" |
public static final String |
TRANSMUCOSAL |
"Parenteral_Transmucosal" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DECREASE |
"decrease" |
public static final String |
DECREASEFROM |
"decreasefrom" |
public static final String |
INCREASE |
"increase" |
public static final String |
INCREASEFROM |
"increasefrom" |
public static final String |
MAX |
"maximum" |
public static final String |
NOCHANGE |
"noChange" |
public static final String |
OTHER |
"change" |
public static final String |
START |
"start" |
public static final String |
STOP |
"stop" |
public static final String |
SUM |
"add" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
QUANTITY_24 |
24.0 |
public static final double |
QUANTITY_BIWEEKLY |
0.07 |
public static final double |
QUANTITY_EIGHT |
8.0 |
public static final double |
QUANTITY_ELEVEN |
11.0 |
public static final double |
QUANTITY_EVERY_OTHER_DAY |
0.5 |
public static final double |
QUANTITY_FIVE |
5.0 |
public static final double |
QUANTITY_FOUR |
4.0 |
public static final double |
QUANTITY_MONTHLY |
0.03 |
public static final double |
QUANTITY_NINE |
9.0 |
public static final double |
QUANTITY_ONE |
1.0 |
public static final double |
QUANTITY_PRN |
0.0 |
public static final double |
QUANTITY_SEVEN |
7.0 |
public static final double |
QUANTITY_SIX |
6.0 |
public static final double |
QUANTITY_TEN |
10.0 |
public static final double |
QUANTITY_THREE |
3.0 |
public static final double |
QUANTITY_TWO |
2.0 |
public static final double |
QUANTITY_WEEKLY |
0.14 |
public static final double |
QUANTITY_YEARLY |
0.003 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
GASTRIC |
2 |
public static final int |
INTRAARTERIAL |
5 |
public static final int |
INTRACARDIAC |
7 |
public static final int |
INTRAMUSCULAR |
6 |
public static final int |
INTRAPERITONEAL |
10 |
public static final int |
INTRATHECAL |
9 |
public static final int |
INTRAVENOUS |
4 |
public static final int |
ORAL |
1 |
public static final int |
RECTAL |
3 |
public static final int |
SUBCUTANEOUS |
8 |
public static final int |
TOPICAL |
0 |
public static final int |
TRANSDERMAL |
11 |
public static final int |
TRANSMUCOSAL |
12 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
CONFIRMED_STATUS |
0 |
public static final int |
FAMILY_HISTORY_STATUS |
2 |
public static final int |
HISTORY_STATUS |
1 |
public static final int |
PROBABLE_STATUS |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_PRINT_ANN |
"PARAM_PRINT_ANN" |
public static final String |
PARAM_SAVE_ANN |
"PARAM_SAVE_ANN" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
CENTER |
0.5f |
public static final float |
LEFT |
0.0f |
public static final float |
RIGHT |
1.0f |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PREFERRED_TERM_UNKNOWN |
"Unknown Preferred Term" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
URL_PREFIX |
"jdbc:hsqldb:file:" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
OPT_XDL_CONN |
"c" |
public static final String |
OPT_XDL_DATA |
"d" |
public static final String |
OPT_XDL_LOAD |
"l" |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
DYNAMIC_VALIDATION_FEATURE_ID |
"http://apache.org/xml/features/validation/dynamic" |
protected static final String |
NAMESPACE_PREFIXES_FEATURE_ID |
"http://xml.org/sax/features/namespace-prefixes" |
protected static final String |
NAMESPACES_FEATURE_ID |
"http://xml.org/sax/features/namespaces" |
protected static final String |
SCHEMA_FULL_CHECKING_FEATURE_ID |
"http://apache.org/xml/features/validation/schema-full-checking" |
protected static final String |
SCHEMA_NONS_LOCATION_ID |
"http://apache.org/xml/properties/schema/external-noNamespaceSchemaLocation" |
protected static final String |
SCHEMA_VALIDATION_FEATURE_ID |
"http://apache.org/xml/features/validation/schema" |
protected static final String |
VALIDATION_FEATURE_ID |
"http://xml.org/sax/features/validation" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_CMD_CACHE_FILE |
"CmdCacheFileLocation" |
public static final String |
PARAM_EXCLUSION_WORDS |
"ExclusionSet" |
public static final String |
PARAM_LEMMA_CACHE_FILE_LOCATION |
"LemmaCacheFileLocation" |
public static final String |
PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF |
"LemmaCacheFrequencyCutoff" |
public static final String |
PARAM_LEMMA_FREQ_CUTOFF |
"CmdCacheFrequencyCutoff" |
public static final String |
PARAM_LVGCMDAPI_RESRC_KEY |
"LvgCmdApi" |
public static final String |
PARAM_POST_LEMMAS |
"PostLemmas" |
public static final String |
PARAM_SKIP_SEGMENTS |
"SegmentsToSkip" |
public static final String |
PARAM_USE_CMD_CACHE |
"UseCmdCache" |
public static final String |
PARAM_USE_LEMMA_CACHE |
"UseLemmaCache" |
public static final String |
PARAM_USE_SEGMENTS |
"UseSegments" |
public static final String |
PARAM_XT_MAP |
"XeroxTreebankMap" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_LEMMA_CACHE_FILE_LOCATION |
"LemmaCacheFileLocation" |
public static final String |
PARAM_LEMMA_CACHE_FREQUENCY_CUTOFF |
"LemmaCacheFrequencyCutoff" |
public static final String |
PARAM_POST_LEMMAS |
"PostLemmas" |
public static final String |
PARAM_USE_LEMMA_CACHE |
"UseLemmaCache" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ALL_SCOPE |
4 |
public static final String |
CONTEXT_ANALYZER_CLASS_PARAM |
"ContextAnalyzerClass" |
public static final String |
CONTEXT_ANNOTATION_CLASS_PARAM |
"ContextAnnotationClass" |
public static final String |
CONTEXT_HIT_CONSUMER_CLASS_PARAM |
"ContextHitConsumerClass" |
public static final String |
FOCUS_ANNOTATION_CLASS_PARAM |
"FocusAnnotationClass" |
public static final int |
LEFT_SCOPE |
1 |
public static final String |
MAX_LEFT_SCOPE_SIZE_PARAM |
"MaxLeftScopeSize" |
public static final String |
MAX_RIGHT_SCOPE_SIZE_PARAM |
"MaxRightScopeSize" |
public static final int |
MIDDLE_SCOPE |
2 |
public static final int |
RIGHT_SCOPE |
3 |
public static final String |
SCOPE_ORDER_PARAM |
"ScopeOrder" |
public static final String |
WINDOW_ANNOTATION_CLASS_PARAM |
"WindowAnnotationClass" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CTX_HIT_KEY_STATUS_TYPE |
"STATUS_TYPE" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DEFAULT_MODEL_FILE_NAME |
"org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar" |
public static final String |
PARAM_POS_MODEL_FILE_NAME |
"POSModelFileName" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
LOAD_WORDS_ONLY_PARAM |
"LoadWordsOnly" |
public static final String |
POS_DATA_FILE_PARAM |
"PosDataFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_POS_MODEL_FILE |
"PosModelFile" |
public static final String |
POS_MODEL_FILE_PARAM |
"PosModelFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
MD_KEY_ADMIT_DATE |
"ADMIT_DATE" |
public static final String |
MD_KEY_CUSTOMER_ID |
"CLINICAL_NUMBER" |
public static final String |
MD_KEY_DISCHARGE_DATE |
"DISCHARGE_DATE" |
public static final String |
MD_KEY_DOC_CONFIDENTIAL_IND |
"DOC_CONFIDENTIAL_IND" |
public static final String |
MD_KEY_DOC_ID |
"DOC_ID" |
public static final String |
MD_KEY_DOC_LINK_ID |
"DOC_LINK_ID" |
public static final String |
MD_KEY_DOC_REVISION_ID |
"DOC_REVISION_ID" |
public static final String |
MD_KEY_DOC_STATUS_CODE |
"DOC_STATUS_CODE" |
public static final String |
MD_KEY_EVENT_TYPE_CODE |
"EVENT_TYPE_CODE" |
public static final String |
MD_KEY_FACILITY_CODE |
"FACILITY_CODE" |
public static final String |
MD_KEY_HISTORY_SECTION |
"HISTORY_SECTION" |
public static final String |
MD_KEY_LOCATION |
"LOCATION" |
public static final String |
MD_KEY_MINUTES_COUNSELING |
"MINUTES_COUNSELING" |
public static final String |
MD_KEY_NOTE_DATE |
"NOTE_DATE" |
public static final String |
MD_KEY_PATIENT_CITY |
"PATIENT_CITY" |
public static final String |
MD_KEY_PATIENT_CNT |
"PATIENT_CNT" |
public static final String |
MD_KEY_PATIENT_STATE |
"PATIENT_STATE" |
public static final String |
MD_KEY_PATIENT_STREET_ADDR |
"PATIENT_ADDR" |
public static final String |
MD_KEY_PATIENT_ZIP |
"PATIENT_ZIP" |
public static final String |
MD_KEY_PROVIDER_ID |
"PROVIDER_ID" |
public static final String |
MD_KEY_PROVIDER2_ID |
"PROVIDER2_ID" |
public static final String |
MD_KEY_PT_BILLING_CODE |
"PT_BILLING_CODE" |
public static final String |
MD_KEY_PT_BIRTH_DATE |
"PT_BIRTH_DATE" |
public static final String |
MD_KEY_PT_BMI |
"PT_BMI" |
public static final String |
MD_KEY_PT_BSA |
"PT_BSA" |
public static final String |
MD_KEY_PT_GENDER |
"PT_GENDER" |
public static final String |
MD_KEY_PT_HEAD_CIRCUMFERENCE |
"PT_HEAD_CIRCUMFERENCE" |
public static final String |
MD_KEY_PT_HEIGHT |
"PT_HEIGHT" |
public static final String |
MD_KEY_PT_RESPIRATORY_RATE |
"PT_RESPIRATORY_RATE" |
public static final String |
MD_KEY_PT_TEMPERATURE |
"PT_TEMPERATURE" |
public static final String |
MD_KEY_PT_WEIGHT |
"PT_WEIGHT" |
public static final String |
MD_KEY_REV_DATE |
"REV_DATE" |
public static final String |
MD_KEY_SERVICE_CODE |
"SERVICE_CODE" |
public static final String |
MD_KEY_SIGNATURE_DATE |
"SIGNATURE_DATE" |
public static final String |
MD_KEY_SIGNATURE_ID |
"SIGNATURE_ID" |
public static final String |
MD_KEY_SITE_CODE |
"SITE_CODE" |
public static final String |
MD_KEY_TOTAL_TIME |
"TOTAL_TIME" |
public static final String |
MD_KEY_TRANSCRIBER_ID |
"TRANSCRIBER_ID" |
public static final String |
MD_KEY_TRANSCRIPTION_DATE |
"TRANSCRIPTION_DATE" |
public static final int |
UNKNOWN_TABLE_TYPE |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
protected static final String |
DEFAULT_DTD_FILE |
"org/apache/ctakes/preprocessor/cda/NotesIIST_RTF.DTD" |
protected static final String |
DEFAULT_HYPHEN_FILE |
"org/apache/ctakes/preprocessor/tokenizer/hyphenated.txt" |
public static final String |
PARAM_DTD_FILE |
"DtdFile" |
public static final String |
PARAM_HYPHEN_FILE |
"HyphenFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"-NONE-" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE |
"ProbabilityOfKeepingANegativeExample" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
wordNetPath |
"/usr/share/wordnet" |
Modifier and Type | Constant Field | Value |
---|---|---|
public final int |
OUTCOME1 |
1 |
public final int |
OUTCOME2 |
2 |
public final int |
OUTCOME3 |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
mipacDevXmlPath |
"/home/dima/sharp/cloud/mipacq/xml/dev/" |
public static final String |
mipacqAllXmlPath |
"/home/dima/sharp/cloud/mipacq/xml/all/" |
public static final String |
mipacqTestXmlPath |
"/home/dima/sharp/cloud/mipacq/xml/test/" |
public static final String |
mipacqTrainXmlPath |
"/home/dima/sharp/cloud/mipacq/xml/train/" |
public static final String |
shareAllXmlPath |
"/home/dima/sharp/cloud/share/xml/all/" |
public static final String |
shareDevXmlPath |
"/home/dima/sharp/cloud/share/xml/dev/" |
public static final String |
shareTestXmlPath |
"/home/dima/sharp/cloud/share/xml/test/" |
public static final String |
shareTrainXmlPath |
"/home/dima/sharp/cloud/share/xml/train/" |
public static final String |
sharpAllXmlPath |
"/home/dima/sharp/cloud/sharp/xml/all/" |
public static final String |
sharpDevXmlPath |
"/home/dima/sharp/cloud/sharp/xml/dev/" |
public static final String |
sharpTestXmlPath |
"/home/dima/sharp/cloud/sharp/xml/test/" |
public static final String |
sharpTrainXmlPath |
"/home/dima/sharp/cloud/sharp/xml/train/" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
goldViewName |
"GoldView" |
public static final String |
systemViewName |
"_InitialView" |
public static final String |
targetRelationType |
"location_of" |
Modifier and Type | Constant Field | Value |
---|---|---|
public final String |
ALLFILELOC |
"/home/dima/sharp/cloud/share/xml/all/" |
public final String |
DEVLOC |
"/home/dima/sharp/cloud/share/xml/dev/" |
public final String |
TESTLOC |
"/home/dima/sharp/cloud/share/xml/test/" |
public final String |
TRAINLOC |
"/home/dima/sharp/cloud/share/xml/train/" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final boolean |
readOnlySharpRelations |
true |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
embeddingPath |
"/Users/dima/Boston/Vectors/Models/ties-plus-oov.txt" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FILES |
"files" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
public static final String |
XMI_OUTPUT_DIR |
"C:\\Spiffy\\prj_darth_phenome\\output\\temp\\metastatic\\Test" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_XMI_DIRECTORY |
"XMIDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public final boolean |
displayContext |
false |
public final boolean |
displayEntities |
false |
Modifier and Type | Constant Field | Value |
---|---|---|
protected final boolean |
classifyBothDirections |
false |
public static final String |
PARAM_CLASSIFY_BOTH_DIRECTIONS |
"ClassifyBothDirections" |
public static final String |
PARAM_OUTFILE |
"outputFilename" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_IGNORE_SECTIONS |
"SectionsToIgnore" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DELIMITER |
"Delimiter" |
public static final String |
PARAM_OUTPUT_FILE |
"OutputFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DELIMITER |
"Delimiter" |
public static final String |
PARAM_OUTPUT_FILE |
"OutputFile" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CLASS_CURR_SMOKER |
"CURRENT_SMOKER" |
public static final int |
CLASS_CURR_SMOKER_INT |
1 |
public static final String |
CLASS_KNOWN |
"KNOWN" |
public static final String |
CLASS_NON_SMOKER |
"NON_SMOKER" |
public static final String |
CLASS_PAST_SMOKER |
"PAST_SMOKER" |
public static final int |
CLASS_PAST_SMOKER_INT |
2 |
public static final String |
CLASS_SMOKER |
"SMOKER" |
public static final int |
CLASS_SMOKER_INT |
3 |
public static final String |
CLASS_UNKNOWN |
"UNKNOWN" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ALLOWED_CLASSES |
"AllowedClassifications" |
public static final String |
PARAM_IGNORE_SECTIONS |
"SectionsToIgnore" |
public static final String |
PARAM_PARSE_SECTIONS |
"ParseSections" |
public static final String |
PARAM_SMOKING_STATUS_DESC_STEP1KEY |
"UimaDescriptorStep1Key" |
public static final String |
PARAM_SMOKING_STATUS_DESC_STEP2KEY |
"UimaDescriptorStep2Key" |
public static final String |
PARAM_TRUTH_FILE |
"TruthFile" |
public static final String |
PARAM_TRUTH_FILE_DELIMITER |
"TruthFileDelimiter" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_IGNORE_WORDS |
"WordsToIgnore" |
public static final String |
PARAM_WORDS_IN_PATTERN |
"WordsInPattern" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CDA_PROCESSING |
"ProcessingCDADocument" |
public static final String |
FINAL_CLASS_FILE |
"FinalClassificationOutputFile" |
public static final String |
PARAM_DELIMITER |
"Delimiter" |
public static final String |
PARAM_OUTPUT_FILE |
"OutputFile" |
public static final String |
PATIENT_LEVEL_PROCESSING |
"RunPatientLevelClassification" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_TIMEX_VIEW |
"TimexView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_TIMEX_VIEW |
"TimexView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_TIMEX_VIEW |
"TimexView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ANAFORA_DIRECTORY |
"anaforaDirectory" |
public static final String |
PARAM_ANAFORA_XML_SUFFIXES |
"anaforaSuffixes" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_PROB_VIEW |
"ProbView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FEATURE_SELECTION_THRESHOLD |
"WhetherToDoFeatureSelection" |
public static final String |
PARAM_FEATURE_SELECTION_URI |
"FeatureSelectionURI" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE |
"ProbabilityOfKeepingANegativeExample" |
public static final String |
PARAM_SMOTE_NUM_NEIGHBORS |
"NumOfNeighborForSMOTE" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"-NONE-" |
public static final String |
PARAM_TIMEX_VIEW |
"TimexView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_INPUT_DIR |
"PARAM_INPUT_DIR" |
public static final String |
PARAM_MAP_THYME |
"PARAM_MAP_THYME" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
MINMAX_EXTRACTOR_KEY |
"MINMAXFeatures" |
public static final String |
NO_RELATION_CATEGORY |
"-NONE-" |
public static final String |
PARAM_PROB_VIEW |
"ProbView" |
public static final String |
PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE |
"ProbabilityOfKeepingANegativeExample" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ANAFORA_DIRECTORY |
"anaforaDirectory" |
public static final String |
PARAM_ANAFORA_XML_SUFFIXES |
"anaforaSuffixes" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_KNOWTATOR_XML_DIRECTORY |
"knowtatorXMLDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
TREEBANK_DIRECTORY |
"treebankDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_FEATURE_SELECTION_THRESHOLD |
"WhetherToDoFeatureSelection" |
public static final String |
PARAM_FEATURE_SELECTION_URI |
"FeatureSelectionURI" |
public static final String |
PARAM_SMOTE_NUM_NEIGHBORS |
"NumOfNeighborForSMOTE" |
public static final String |
PARAM_TIMEX_VIEW |
"TimexView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
FEAT_NAME |
"TK_DepSingleT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
FEAT_NAME |
"TK_SingleT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
FEAT_NAME |
"TK_FT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
public static final String |
SYSTEM_VIEW_NAME |
"_InitialView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
durationDistributionPath |
"/Users/dima/Boston/Thyme/Duration/Data/Combined/Distribution/all.txt" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
GOLD_VIEW_NAME |
"GoldView" |
public static final String |
PROB_VIEW_NAME |
"ProbView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ANNOTATION_CLASSES |
"AnnotationClasses" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_ANNOTATION_CLASSES |
"AnnotationClasses" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUT_DIR |
"PARAM_OUTPUT_DIR" |
public static final String |
PARAM_PROB_VIEW |
"ProbView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_OUTPUT_DIR |
"PARAM_OUTPUT_DIR" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_XMI_DIRECTORY |
"XMIDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_XMI_DIRECTORY |
"XMIDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLDVIEW_NAME |
"GOLD_VIEW_NAME" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SCRIPT_DIR |
"DataWriterScriptDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SCRIPT_DIR |
"DataWriterScriptDirectory" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO_RELATION_CATEGORY |
"none" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
public static final String |
PARAM_SENTENCE_VIEW |
"SentenceView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_RELATION_VIEW |
"RelationView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_GOLD_VIEW |
"GoldView" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NO_ENTITY_ID |
-2147483648 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
AF |
1 |
public static final int |
BF |
0 |
public static final int |
BO |
4 |
public static final int |
CB |
3 |
public static final int |
CN |
2 |
public static final int |
EO |
5 |
public static final int |
NO |
-1 |
public static final int |
OV |
6 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ATTR_BODYLATERALITY_DISTAL |
"distal" |
public static final String |
ATTR_BODYLATERALITY_DORSAL |
"dorsal" |
public static final String |
ATTR_BODYLATERALITY_INFERIOR |
"inferior" |
public static final String |
ATTR_BODYLATERALITY_LATERAL |
"lateral" |
public static final String |
ATTR_BODYLATERALITY_MEDIAL |
"medial" |
public static final String |
ATTR_BODYLATERALITY_PROXIMAL |
"proximal" |
public static final String |
ATTR_BODYLATERALITY_SUPERIOR |
"superior" |
public static final String |
ATTR_BODYLATERALITY_UNMARKED |
"unmarked" |
public static final String |
ATTR_BODYLATERALITY_VENTRAL |
"ventral" |
public static final String |
ATTR_BODYSIDE_BILATERAL |
"bilateral" |
public static final String |
ATTR_BODYSIDE_LEFT |
"left" |
public static final String |
ATTR_BODYSIDE_RIGHT |
"right" |
public static final String |
ATTR_BODYSIDE_UNMARKED |
"unmarked" |
public static final String |
ATTR_HISTORYOF_INDICATOR_ABSENT |
"historyOf_absent" |
public static final String |
ATTR_HISTORYOF_INDICATOR_PRESENT |
"historyOf_present" |
public static final String |
ATTR_LAB_ABNORMAL_TRUE |
"abnormal" |
public static final String |
ATTR_LAB_ABNORMAL_VERYTRUE |
"very_abnormal" |
public static final String |
ATTR_LAB_DELTAFLAG_CHANGEDOWN |
"change_down" |
public static final String |
ATTR_LAB_DELTAFLAG_CHANGEUP |
"change_up" |
public static final String |
ATTR_LAB_DELTAFLAG_NOCHANGE |
"no_change" |
public static final boolean |
ATTR_LAB_ESTIMATED_FLAG_FALSE |
false |
public static final boolean |
ATTR_LAB_ESTIMATED_FLAG_TRUE |
true |
public static final String |
ATTR_LAB_ORDINAL_1ORMORE |
"1+" |
public static final String |
ATTR_LAB_ORDINAL_2ORMORE |
"2+" |
public static final String |
ATTR_LAB_ORDINAL_3ORMORE |
"3+" |
public static final String |
ATTR_LAB_ORDINAL_4ORMORE |
"4+" |
public static final String |
ATTR_LAB_ORDINAL_ANTICOMPLEMENTARYPRESENT |
"anti_complementary_substance_present" |
public static final String |
ATTR_LAB_ORDINAL_CYTOTOXICPRESENT |
"cytotoxic_substance_present" |
public static final String |
ATTR_LAB_ORDINAL_DETECTED |
"detected" |
public static final String |
ATTR_LAB_ORDINAL_INTERMEDIATE |
"intermediate" |
public static final String |
ATTR_LAB_ORDINAL_INTERMEDIATERESISTANCE |
"intermediate_resistance" |
public static final String |
ATTR_LAB_ORDINAL_MODERATELYSUSCEPTIBLE |
"moderately_susceptible" |
public static final String |
ATTR_LAB_ORDINAL_NEGATIVE |
"negative" |
public static final String |
ATTR_LAB_ORDINAL_NO_OR_NA_RANGE |
"no_range_or_normal_range_n/a" |
public static final String |
ATTR_LAB_ORDINAL_NORMAL |
"normal" |
public static final String |
ATTR_LAB_ORDINAL_NOTDETECTED |
"not_detected" |
public static final String |
ATTR_LAB_ORDINAL_POSITIVE |
"positive" |
public static final String |
ATTR_LAB_ORDINAL_QUALITYCONTROLFAIL |
"quality_control_failure" |
public static final String |
ATTR_LAB_ORDINAL_REACTIVE |
"reactive" |
public static final String |
ATTR_LAB_ORDINAL_RESISTANT |
"resistant" |
public static final String |
ATTR_LAB_ORDINAL_SMALL |
"small" |
public static final String |
ATTR_LAB_ORDINAL_SUSCEPTIBLE |
"susceptible" |
public static final String |
ATTR_LAB_ORDINAL_TRACE |
"trace" |
public static final String |
ATTR_LAB_ORDINAL_VERYSUSCEPTIBLE |
"very_susceptible" |
public static final String |
ATTR_LAB_ORDINAL_WEAKLY_REACTIVE |
"weakly_reactive" |
public static final String |
ATTR_MEDICATION_ALLERGY_INDICATOR_ABSENT |
"allergy_absent" |
public static final String |
ATTR_MEDICATION_ALLERGY_INDICATOR_PRESENT |
"allergy_present" |
public static final String |
ATTR_MEDICATION_DOSAGE_1 |
"1" |
public static final String |
ATTR_MEDICATION_DOSAGE_2 |
"2" |
public static final String |
ATTR_MEDICATION_DOSAGE_3 |
"3" |
public static final String |
ATTR_MEDICATION_DOSAGE_4 |
"4" |
public static final String |
ATTR_MEDICATION_DOSAGE_5 |
"5" |
public static final String |
ATTR_MEDICATION_DOSAGE_OTHER |
"other" |
public static final String |
ATTR_MEDICATION_DOSAGE_UNDETERMINED |
"undetermined" |
public static final String |
ATTR_MEDICATION_FORM_AEROSOL |
"aerosol" |
public static final String |
ATTR_MEDICATION_FORM_CAPSULE |
"capsule" |
public static final String |
ATTR_MEDICATION_FORM_CREAM |
"cream" |
public static final String |
ATTR_MEDICATION_FORM_ELIXIR |
"elixir" |
public static final String |
ATTR_MEDICATION_FORM_EMULSION |
"emulsion" |
public static final String |
ATTR_MEDICATION_FORM_ENEMA |
"enema" |
public static final String |
ATTR_MEDICATION_FORM_GEL |
"gel" |
public static final String |
ATTR_MEDICATION_FORM_IMPLANT |
"implant" |
public static final String |
ATTR_MEDICATION_FORM_INHALANT |
"inhalant" |
public static final String |
ATTR_MEDICATION_FORM_INJECTION |
"injection" |
public static final String |
ATTR_MEDICATION_FORM_LIQUID |
"liquid" |
public static final String |
ATTR_MEDICATION_FORM_LOTION |
"lotion" |
public static final String |
ATTR_MEDICATION_FORM_LOZENGE |
"lozenge" |
public static final String |
ATTR_MEDICATION_FORM_OINTMENT |
"ointment" |
public static final String |
ATTR_MEDICATION_FORM_OTHER |
"other" |
public static final String |
ATTR_MEDICATION_FORM_PATCH |
"patch" |
public static final String |
ATTR_MEDICATION_FORM_PELLET |
"pellet" |
public static final String |
ATTR_MEDICATION_FORM_PILL |
"pill" |
public static final String |
ATTR_MEDICATION_FORM_POWDER |
"powder" |
public static final String |
ATTR_MEDICATION_FORM_SHAMPOO |
"shampoo" |
public static final String |
ATTR_MEDICATION_FORM_SOAP |
"soap" |
public static final String |
ATTR_MEDICATION_FORM_SOLUTION |
"solution" |
public static final String |
ATTR_MEDICATION_FORM_SPRAY |
"spray" |
public static final String |
ATTR_MEDICATION_FORM_SUPPOSITORY |
"suppository" |
public static final String |
ATTR_MEDICATION_FORM_SYRUP |
"syrup" |
public static final String |
ATTR_MEDICATION_FORM_TABLET |
"tablet" |
public static final String |
ATTR_MEDICATION_ROUTE_ENTERAL_GASTRIC |
"gastric" |
public static final String |
ATTR_MEDICATION_ROUTE_ENTERAL_ORAL |
"oral" |
public static final String |
ATTR_MEDICATION_ROUTE_ENTERAL_RECTAL |
"rectal" |
public static final String |
ATTR_MEDICATION_ROUTE_OTHER |
"other" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAARTERIAL |
"intra-arterial" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRACARDIAC |
"intracardiac" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAMUSCULAR |
"intramuscular" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAPERIOTONEAL |
"intraperiotoneal" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRATHECAL |
"intrathecal" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_INTRAVENOUS |
"intravenous" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_SUBCUTANEOUS |
"subcutaneous" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_TRANSDERMAL |
"transdermal" |
public static final String |
ATTR_MEDICATION_ROUTE_PARENTERAL_TRANSMUCOSAL |
"transmucosal" |
public static final String |
ATTR_MEDICATION_ROUTE_TOPICAL |
"topical" |
public static final String |
ATTR_MEDICATION_ROUTE_UNDETERMINED |
"undetermined" |
public static final String |
ATTR_MEDICATION_STATUSCHANGE_DECREASE |
"decrease" |
public static final String |
ATTR_MEDICATION_STATUSCHANGE_INCREASE |
"increase" |
public static final String |
ATTR_MEDICATION_STATUSCHANGE_NOCHANGE |
"noChange" |
public static final String |
ATTR_MEDICATION_STATUSCHANGE_START |
"start" |
public static final String |
ATTR_MEDICATION_STATUSCHANGE_STOP |
"stop" |
public static final String |
ATTR_SEVERITY_MODERATE |
"moderate" |
public static final String |
ATTR_SEVERITY_SEVERE |
"severe" |
public static final String |
ATTR_SEVERITY_SLIGHT |
"slight" |
public static final String |
ATTR_SEVERITY_UNMARKED |
"unmarked" |
public static final String |
ATTR_SUBJECT_DONOR_FAMILY_MEMBER |
"donor_family_member" |
public static final String |
ATTR_SUBJECT_DONOR_OTHER |
"donor_other" |
public static final String |
ATTR_SUBJECT_FAMILY_MEMBER |
"family_member" |
public static final String |
ATTR_SUBJECT_OTHER |
"other" |
public static final String |
ATTR_SUBJECT_PATIENT |
"patient" |
public static final String |
MED_STATUS_CHANGE_DECREASE |
"decrease" |
public static final String |
MED_STATUS_CHANGE_DECREASEFROM |
"decreasefrom" |
public static final String |
MED_STATUS_CHANGE_INCREASE |
"increase" |
public static final String |
MED_STATUS_CHANGE_INCREASEFROM |
"increasefrom" |
public static final String |
MED_STATUS_CHANGE_MAX |
"maximum" |
public static final String |
MED_STATUS_CHANGE_NOCHANGE |
"noChange" |
public static final String |
MED_STATUS_CHANGE_OTHER |
"change" |
public static final String |
MED_STATUS_CHANGE_START |
"start" |
public static final String |
MED_STATUS_CHANGE_STOP |
"stop" |
public static final String |
MED_STATUS_CHANGE_SUM |
"add" |
public static final int |
MODIFIER_TYPE_ID_COURSE_CLASS |
1 |
public static final int |
MODIFIER_TYPE_ID_LAB_INTERPRETATION_INDICATOR |
3 |
public static final int |
MODIFIER_TYPE_ID_SEVERITY_CLASS |
2 |
public static final int |
MODIFIER_TYPE_ID_UNKNOWN |
0 |
public static final int |
NE_CERTAINTY_NEGATED |
-1 |
public static final int |
NE_CERTAINTY_POSITIVE |
1 |
public static final boolean |
NE_CONDITIONAL_FALSE |
false |
public static final boolean |
NE_CONDITIONAL_TRUE |
true |
public static final int |
NE_DIAG_STATUS_CONFIRMED |
0 |
public static final int |
NE_DIAG_STATUS_FAM_HISTORY_OF |
2 |
public static final int |
NE_DIAG_STATUS_HISTORY_OF |
1 |
public static final int |
NE_DIAG_STATUS_PROBABLE |
3 |
public static final int |
NE_DISCOVERY_TECH_DICT_LOOKUP |
1 |
public static final int |
NE_DISCOVERY_TECH_GOLD_ANNOTATION |
2 |
public static final boolean |
NE_GENERIC_FALSE |
false |
public static final boolean |
NE_GENERIC_TRUE |
true |
public static final int |
NE_HISTORY_OF_ABSENT |
0 |
public static final int |
NE_HISTORY_OF_PRESENT |
1 |
public static final int |
NE_POLARITY_NEGATION_ABSENT |
1 |
public static final int |
NE_POLARITY_NEGATION_PRESENT |
-1 |
public static final int |
NE_TYPE_ID_ANATOMICAL_SITE |
6 |
public static final int |
NE_TYPE_ID_CLINICAL_ATTRIBUTE |
7 |
public static final int |
NE_TYPE_ID_DEVICE |
8 |
public static final int |
NE_TYPE_ID_DISORDER |
2 |
public static final int |
NE_TYPE_ID_DRUG |
1 |
public static final int |
NE_TYPE_ID_FINDING |
3 |
public static final int |
NE_TYPE_ID_LAB |
9 |
public static final int |
NE_TYPE_ID_PHENOMENA |
10 |
public static final int |
NE_TYPE_ID_PROCEDURE |
5 |
public static final int |
NE_TYPE_ID_UNKNOWN |
0 |
public static final int |
NE_UNCERTAINTY_ABSENT |
0 |
public static final int |
NE_UNCERTAINTY_PRESENT |
1 |
public static final int |
REL_DISCOVERY_TECH_GOLD_ANNOTATION |
1 |
public static final String |
TIME_CLASS_DATE |
"DATE" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
NO |
"no" |
public static final String |
YES |
"yes" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
SUFFIX_IMPUTED |
"-imputed" |
public static final String |
SUFFIX_IMPUTED_FILTERED |
"-imputed-filt" |
public static final String |
SUFFIX_PROP |
"-propagated" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
INFOCONTENT |
"infocontent" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
INTRINSIC_INFOCONTENT |
"intrinsic-infocontent" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ATTR_INSTANCE_ID |
"instance_id" |
public static final String |
SCOPE |
"scope" |
public static final String |
SCOPE_FOLD |
"fold" |
public static final String |
SCOPE_LABEL |
"label" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
FIELD_DELIM |
"\t" |
public static final boolean |
INCLUDE_HEADER |
false |
public static final String |
RECORD_DELIM |
"\n" |
public static final String |
STRING_ESCAPE |
"" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DATE_FORMAT |
"yyyy-MM-dd\'T\'HH:mm:ssZ" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
ACRONYM_PATTERN |
"(?m)Dr\\z|Ms\\z|Mr\\z|Mrs\\z|Ms\\z|\\p{Upper}\\z" |
public static final String |
PARAGRAPH_PATTERN |
"(?m):\\r{0,1}\\n|\\r{0,1}\\n\\r{0,1}\\n" |
public static final String |
PARAM_SEGMENTS_TO_SKIP |
"SegmentsToSkip" |
public static final String |
PERIOD_PATTERN |
"(?m)\\A\\s+\\p{Upper}|\\A\\s+\\d\\." |
public static final String |
SD_MODEL_FILE_PARAM |
"SentenceModelFile" |
public static final String |
SPLIT_PATTERN |
"(?im)\\n[\\(\\[]\\s*[yesxno]{0,3}\\s*[\\)\\]]|[\\(\\[]\\s*[yesxno]{0,3}\\s*[\\)\\]]\\s*\\r{0,1}\\n|^[^:\\r\\n]{3,20}\\:[^\\r\\n]{3,20}$" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_DRIVER_CLASS |
"DriverClassName" |
public static final String |
PARAM_ISOLATION |
"TransactionIsolation" |
public static final String |
PARAM_KEEP_ALIVE |
"KeepConnectionAlive" |
public static final String |
PARAM_PASSWORD |
"Password" |
public static final String |
PARAM_URL |
"URL" |
public static final String |
PARAM_USERNAME |
"Username" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
INDEX_NAME |
"gramIndex" |
public static final String |
INDEX_NAME_NOMINAL |
"gramIndexN" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
CLASS |
"ytex_class" |
public static final String |
INSTANCE_ID |
"instance_id" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
PARAM_SECTION_REGEX_FILE_URI |
"SectionRegex" |
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