org.apache.ctakes.dictionary.lookup.ae

Class UmlsDictionaryLookupAnnotator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator

org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

@PipeBitInfo(name="UMLS Dictionary Lookup (Old)",
             description="Annotates clinically-relevant terms.  This is an older, slower dictionary lookup implementation.",
             dependencies={CHUNK,BASE_TOKEN},
             products=IDENTIFIED_ANNOTATION)
public class UmlsDictionaryLookupAnnotator
extends DictionaryLookupAnnotator

UIMA annotator that identified entities based on lookup.

Author:

Mayo Clinic

Field Summary

Fields

Modifier and Type	Field and Description
static String	UMLSADDR_PARAM
static String	UMLSPW_PARAM
static String	UMLSUSER_PARAM
static String	UMLSVENDOR_PARAM

Constructor Summary

Constructors

Constructor and Description
UmlsDictionaryLookupAnnotator()

Method Summary

Modifier and Type	Method and Description
static org.apache.uima.analysis_engine.AnalysisEngineDescription	createAnnotatorDescription()
void	initialize(org.apache.uima.UimaContext aContext)
static boolean	isValidUMLSUser(String umlsaddr, String vendor, String username, String password)

Methods inherited from class org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator

process

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

UMLSADDR_PARAM

public static final String UMLSADDR_PARAM

See Also:

Constant Field Values

UMLSVENDOR_PARAM

public static final String UMLSVENDOR_PARAM

See Also:

Constant Field Values

UMLSUSER_PARAM

public static final String UMLSUSER_PARAM

See Also:

Constant Field Values

UMLSPW_PARAM

public static final String UMLSPW_PARAM

See Also:

Constant Field Values

Constructor Detail

UmlsDictionaryLookupAnnotator

public UmlsDictionaryLookupAnnotator()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aContext)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class DictionaryLookupAnnotator

Throws:

org.apache.uima.resource.ResourceInitializationException

isValidUMLSUser

public static boolean isValidUMLSUser(String umlsaddr,
                                      String vendor,
                                      String username,
                                      String password)
                               throws Exception

Throws:

Exception

createAnnotatorDescription

public static org.apache.uima.analysis_engine.AnalysisEngineDescription createAnnotatorDescription()
                                                                                            throws org.apache.uima.resource.ResourceInitializationException,
                                                                                                   MalformedURLException

Throws:

org.apache.uima.resource.ResourceInitializationException

MalformedURLException