org.apache.ctakes.sideeffect.ae

Class PSESentenceAnnotator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.ctakes.sideeffect.ae.PSESentenceAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class PSESentenceAnnotator
extends org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Identify the sentence(s) that contains PSE (signs/symptoms or disease/disorder) and drugs and add them to PSESentence. - If the sentence containing PSE doesn't have drug, include the previous sentence if it contains drug and it is in the same line (paragraph). - Disregard the particular section(s) (eg, allergy section (20105)) This annotation will be used to extract features for side-effect sentence classification.

Author:

Mayo Clinic

Field Summary

Fields

Modifier and Type	Field and Description
static String	PARAM_IGNORE_SECTIONS

Constructor Summary

Constructors

Constructor and Description
PSESentenceAnnotator()

Method Summary

Modifier and Type	Method and Description
void	initialize(org.apache.uima.UimaContext aContext)
void	process(org.apache.uima.jcas.JCas jcas)

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PARAM_IGNORE_SECTIONS

public static final String PARAM_IGNORE_SECTIONS

See Also:

Constant Field Values

Constructor Detail

PSESentenceAnnotator

public PSESentenceAnnotator()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aContext)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jcas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException