org.apache.ctakes.smokingstatus.ae

Class ClassifiableEntries

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.ctakes.smokingstatus.ae.ClassifiableEntries

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class ClassifiableEntries
extends org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Author:

Mayo Clinic Intended as an annotator to generate ClassifiableEntries for SmokingStatus pipeline

Field Summary

Fields

Modifier and Type	Field and Description
protected org.apache.log4j.Logger	iv_logger
static String	PARAM_ALLOWED_CLASSES Name of configuration parameter that determines the allowed Classification values.
static String	PARAM_IGNORE_SECTIONS Sections NOT to be entered in ClassifiableEntries
static String	PARAM_PARSE_SECTIONS Name of configuration parameter that determines whether section headers will be parsed out and Segments made to cover the section text.
static String	PARAM_SMOKING_STATUS_DESC_STEP1KEY Name of configuration parameter that must be set to the filepath of the UIMA descriptor ProductionPostSentenceAggregate.xml
static String	PARAM_SMOKING_STATUS_DESC_STEP2KEY
static String	PARAM_TRUTH_FILE Name of configuration parameter that must be set to the filepath of the delimited truth file.
static String	PARAM_TRUTH_FILE_DELIMITER Name of configuration parameter that describes the character delimiter used in the delimited truth file.

Constructor Summary

Constructors

Constructor and Description
ClassifiableEntries()

Method Summary

Modifier and Type	Method and Description
void	collectionProcessComplete(org.apache.uima.jcas.JCas jcas)
void	destroy()
void	initialize(org.apache.uima.UimaContext aContext)
void	process(org.apache.uima.jcas.JCas jcas)

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PARAM_SMOKING_STATUS_DESC_STEP1KEY

public static final String PARAM_SMOKING_STATUS_DESC_STEP1KEY

Name of configuration parameter that must be set to the filepath of the UIMA descriptor ProductionPostSentenceAggregate.xml

See Also:

Constant Field Values

PARAM_SMOKING_STATUS_DESC_STEP2KEY

public static final String PARAM_SMOKING_STATUS_DESC_STEP2KEY

See Also:

Constant Field Values

PARAM_TRUTH_FILE

public static final String PARAM_TRUTH_FILE

Name of configuration parameter that must be set to the filepath of the delimited truth file. This is optional.

See Also:

Constant Field Values

PARAM_TRUTH_FILE_DELIMITER

public static final String PARAM_TRUTH_FILE_DELIMITER

Name of configuration parameter that describes the character delimiter used in the delimited truth file. This is optional.

See Also:

Constant Field Values

PARAM_ALLOWED_CLASSES

public static final String PARAM_ALLOWED_CLASSES

Name of configuration parameter that determines the allowed Classification values. This is optional and only gets used if a Truth file is specified.

See Also:

Constant Field Values

PARAM_PARSE_SECTIONS

public static final String PARAM_PARSE_SECTIONS

Name of configuration parameter that determines whether section headers will be parsed out and Segments made to cover the section text.

See Also:

Constant Field Values

PARAM_IGNORE_SECTIONS

public static final String PARAM_IGNORE_SECTIONS

Sections NOT to be entered in ClassifiableEntries

See Also:

Constant Field Values

iv_logger

protected org.apache.log4j.Logger iv_logger

Constructor Detail

ClassifiableEntries

public ClassifiableEntries()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aContext)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jcas)

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

destroy

public void destroy()

Specified by:

destroy in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

destroy in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

collectionProcessComplete

public void collectionProcessComplete(org.apache.uima.jcas.JCas jcas)
                               throws org.apache.uima.resource.ResourceProcessException,
                                      IOException

Throws:

org.apache.uima.resource.ResourceProcessException

IOException