org.apache.ctakes.temporal.ae

Class EventTimeCNNAnnotator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

org.cleartk.ml.CleartkAnnotator<String>

org.apache.ctakes.temporal.ae.EventTimeCNNAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent, org.apache.uima.fit.factory.initializable.Initializable

@PipeBitInfo(name="E-T CNN TLinker",
             description="Creates Event - Time TLinks with Convolutional Neural Network.",
             dependencies={SENTENCE,EVENT,TIMEX},
             products=TEMPORAL_RELATION)
public class EventTimeCNNAnnotator
extends org.cleartk.ml.CleartkAnnotator<String>

Field Summary

Fields

Modifier and Type	Field and Description
static String	NO_RELATION_CATEGORY

Fields inherited from class org.cleartk.ml.CleartkAnnotator

classifier, dataWriter, PARAM_CLASSIFIER_FACTORY_CLASS_NAME, PARAM_DATA_WRITER_FACTORY_CLASS_NAME, PARAM_IS_TRAINING

Constructor Summary

Constructors

Constructor and Description
EventTimeCNNAnnotator()

Method Summary

Modifier and Type	Method and Description
protected void	createRelation(org.apache.uima.jcas.JCas jCas, IdentifiedAnnotation arg1, IdentifiedAnnotation arg2, String predictedCategory, double confidence)
protected String	getRelationCategory(Map<List<org.apache.uima.jcas.tcas.Annotation>,BinaryTextRelation> relationLookup, IdentifiedAnnotation arg1, IdentifiedAnnotation arg2) Dima's way of getting lables
static String	getTokensBetweenExpanded(org.apache.uima.jcas.JCas jCas, Sentence sent, org.apache.uima.jcas.tcas.Annotation left, String leftType, org.apache.uima.jcas.tcas.Annotation right, String rightType, int contextSize, Map<EventMention,Collection<EventMention>> coveringMap) Print context from left to right.
void	process(org.apache.uima.jcas.JCas jCas)

Methods inherited from class org.cleartk.ml.CleartkAnnotator

collectionProcessComplete, initialize, isTraining

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NO_RELATION_CATEGORY

public static final String NO_RELATION_CATEGORY

See Also:

Constant Field Values

Constructor Detail

EventTimeCNNAnnotator

public EventTimeCNNAnnotator()

Method Detail

process

public void process(org.apache.uima.jcas.JCas jCas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

getTokensBetweenExpanded

public static String getTokensBetweenExpanded(org.apache.uima.jcas.JCas jCas,
                                              Sentence sent,
                                              org.apache.uima.jcas.tcas.Annotation left,
                                              String leftType,
                                              org.apache.uima.jcas.tcas.Annotation right,
                                              String rightType,
                                              int contextSize,
                                              Map<EventMention,Collection<EventMention>> coveringMap)

Print context from left to right.

Parameters:

contextSize - number of tokens to include on the left of arg1 and on the right of arg2

getRelationCategory

protected String getRelationCategory(Map<List<org.apache.uima.jcas.tcas.Annotation>,BinaryTextRelation> relationLookup,
                                     IdentifiedAnnotation arg1,
                                     IdentifiedAnnotation arg2)

Dima's way of getting lables

Parameters:

relationLookup -

arg1 -

arg2 -

Returns:

createRelation

protected void createRelation(org.apache.uima.jcas.JCas jCas,
                              IdentifiedAnnotation arg1,
                              IdentifiedAnnotation arg2,
                              String predictedCategory,
                              double confidence)