| CommandLine |
|
| CommandLine.IntegerRanges |
|
| Evaluation_ImplBase<STATISTICS_TYPE> |
|
| Evaluation_ImplBase.CopyFromGold |
|
| Evaluation_ImplBase.CopyFromSystem |
|
| Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations |
|
| Evaluation_ImplBase.EntityMentionRemover |
|
| Evaluation_ImplBase.EventMentionRemover |
|
| Evaluation_ImplBase.PittHeaderAnnotator |
Grabs the document time from the header
|
| Evaluation_ImplBase.RemoveEnclosedLookupWindows |
|
| Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator |
|
| Evaluation_ImplBase.TimexAnnotationCorrector |
|
| Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes |
|
| Evaluation_ImplBase.WriteAnaforaXML |
|
| Evaluation_ImplBase.WriteI2B2XML |
|
| Evaluation_ImplBase.XMIReader |
|
| Evaluation_ImplBase.XMIWriter |
|
| EvaluationOfAnnotationSpans_ImplBase |
|
| EvaluationOfBothEEAndETRelations |
|
| EvaluationOfBothEEAndETRelations.AddClosure |
|
| EvaluationOfBothEEAndETRelations.AddContain2Overlap |
|
| EvaluationOfBothEEAndETRelations.AddFlippedOverlap |
|
| EvaluationOfBothEEAndETRelations.AddTransitiveContainsRelations |
|
| EvaluationOfBothEEAndETRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfBothEEAndETRelations.RemoveNonTLINKRelations |
|
| EvaluationOfBothEEAndETRelations.RemoveNonUMLSEvents |
|
| EvaluationOfBothEEAndETRelations.RemoveRelations |
|
| EvaluationOfClearTKEventProperties |
|
| EvaluationOfClearTKEventProperties.ClearEventProperties |
|
| EvaluationOfClearTKEventSpans |
|
| EvaluationOfClearTKRelations |
|
| EvaluationOfClearTKTimeSpans |
|
| EvaluationOfEventDocTimeRelDeepPhe |
|
| EvaluationOfEventDocTimeRelDeepPhe.ClearEventProperties |
|
| EvaluationOfEventDocTimeRelDeepPhe.CopyHeadEventDocTimeRel2GoldEvent |
copy covered event's DocTimeRel to the gold event
remove non-gold eventMentions
|
| EvaluationOfEventDocTimeRelDeepPhe.KeepEventMentionsCoveredByGoldMentions |
|
| EvaluationOfEventDocTimeRelDeepPhe.ReplaceCTakesMentionsWithGoldMentions |
Annotator that removes cTAKES Mentions and Modifiers from the system view,
and copies over the manually annotated Mentions and Modifiers from the gold
view.
|
| EvaluationOfEventEventCRFRelations |
|
| EvaluationOfEventEventCRFRelations.AddClosure |
|
| EvaluationOfEventEventCRFRelations.AddContain2Overlap |
|
| EvaluationOfEventEventCRFRelations.AddEEPotentialRelations |
|
| EvaluationOfEventEventCRFRelations.AddFlippedOverlap |
|
| EvaluationOfEventEventCRFRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventEventCRFRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventEventCRFRelations.RemoveLongDistanceEERelations |
|
| EvaluationOfEventEventCRFRelations.RemoveNonUMLSEvents |
|
| EvaluationOfEventEventCRFRelations.RemoveRelations |
|
| EvaluationOfEventEventDeepPheRelations |
|
| EvaluationOfEventEventDeepPheRelations.AddClosure |
|
| EvaluationOfEventEventDeepPheRelations.AddContain2Overlap |
|
| EvaluationOfEventEventDeepPheRelations.AddEEPotentialRelations |
|
| EvaluationOfEventEventDeepPheRelations.AddFlippedOverlap |
|
| EvaluationOfEventEventDeepPheRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventEventDeepPheRelations.CountCloseRelation |
|
| EvaluationOfEventEventDeepPheRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventEventDeepPheRelations.RemoveLongDistanceEERelations |
|
| EvaluationOfEventEventDeepPheRelations.RemoveNonUMLSEvents |
|
| EvaluationOfEventEventDeepPheRelations.RemoveRelations |
|
| EvaluationOfEventEventHybridModelsRelations |
|
| EvaluationOfEventEventHybridModelsRelations.AddClosure |
|
| EvaluationOfEventEventHybridModelsRelations.AddContain2Overlap |
|
| EvaluationOfEventEventHybridModelsRelations.AddFlippedOverlap |
|
| EvaluationOfEventEventHybridModelsRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventEventHybridModelsRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventEventHybridModelsRelations.RemoveLongDistanceEERelations |
public static class CountCloseRelation extends JCasAnnotator_ImplBase {
private String systemViewName = CAS.NAME_DEFAULT_SOFA;
|
| EvaluationOfEventEventHybridModelsRelations.RemoveNonUMLSEvents |
|
| EvaluationOfEventEventHybridModelsRelations.RemoveRelations |
|
| EvaluationOfEventEventRelations |
|
| EvaluationOfEventEventThymeRelations |
|
| EvaluationOfEventEventThymeRelations.AddClosure |
|
| EvaluationOfEventEventThymeRelations.AddContain2Overlap |
|
| EvaluationOfEventEventThymeRelations.AddEEPotentialRelations |
|
| EvaluationOfEventEventThymeRelations.AddFlippedOverlap |
|
| EvaluationOfEventEventThymeRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventEventThymeRelations.CountCloseRelation |
|
| EvaluationOfEventEventThymeRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventEventThymeRelations.RemoveNonUMLSEvents |
|
| EvaluationOfEventEventThymeRelations.RemoveRelations |
|
| EvaluationOfEventProperties |
|
| EvaluationOfEventProperties.ClearEventProperties |
|
| EvaluationOfEventSpans |
|
| EvaluationOfEventTimeDeepPheRelations |
|
| EvaluationOfEventTimeDeepPheRelations.AddClosure |
|
| EvaluationOfEventTimeDeepPheRelations.AddContain2Overlap |
|
| EvaluationOfEventTimeDeepPheRelations.AddEEPotentialRelations |
|
| EvaluationOfEventTimeDeepPheRelations.AddFlippedOverlap |
|
| EvaluationOfEventTimeDeepPheRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventTimeDeepPheRelations.CountCloseRelation |
|
| EvaluationOfEventTimeDeepPheRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventTimeDeepPheRelations.RemoveLongDistanceEERelations |
|
| EvaluationOfEventTimeDeepPheRelations.RemoveNonUMLSEvents |
|
| EvaluationOfEventTimeDeepPheRelations.RemoveRelations |
|
| EvaluationOfEventTimeRelations |
|
| EvaluationOfEventTimeRelations.AddClosure |
|
| EvaluationOfEventTimeRelations.AddContain2Overlap |
|
| EvaluationOfEventTimeRelations.AddFlippedOverlap |
|
| EvaluationOfEventTimeRelations.AddPotentialRelations |
|
| EvaluationOfEventTimeRelations.AddTransitiveContainsRelations |
|
| EvaluationOfEventTimeRelations.CountCloseRelation |
public static class CountSentenceContainsTimes extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
|
| EvaluationOfEventTimeRelations.Overlap2Contains |
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
|
| EvaluationOfEventTimeRelations.ParameterSettings |
Holds a set of parameters for a relation extraction model
|
| EvaluationOfEventTimeRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfEventTimeRelations.RemoveEventEventRelations |
|
| EvaluationOfEventTimeRelations.RemoveNonUMLSEtEvents |
|
| EvaluationOfEventTimeRelations.RemoveRelations |
|
| EvaluationOfI2B2TemporalRelations |
|
| EvaluationOfI2B2TemporalRelations.AddClosure |
|
| EvaluationOfI2B2TemporalRelations.AddFlippedOverlap |
|
| EvaluationOfI2B2TemporalRelations.FindLongDisRelations |
|
| EvaluationOfI2B2TemporalRelations.RemoveNonTLINKRelations |
|
| EvaluationOfI2B2TemporalRelations.RemoveNullArgumentRelations |
public static class RemoveEventEventRelations extends JCasAnnotator_ImplBase {
public static final String PARAM_RELATION_VIEW = "RelationView";
|
| EvaluationOfI2B2TemporalRelations.RemoveRelations |
public static class RemoveCrossSentenceRelations extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
|
| EvaluationOfMetaTimeExpressionExtractor |
|
| EvaluationOfNEPredicateEventSpans |
|
| EvaluationOfSelfEventTimeRelations |
|
| EvaluationOfSelfEventTimeRelations.AddClosure |
|
| EvaluationOfSelfEventTimeRelations.AddContain2Overlap |
|
| EvaluationOfSelfEventTimeRelations.AddFlippedOverlap |
|
| EvaluationOfSelfEventTimeRelations.OverwriteTemporalRelationToSystem |
|
| EvaluationOfSelfEventTimeRelations.RemoveCrossSentenceRelations |
|
| EvaluationOfSelfEventTimeRelations.RemoveEventEventRelations |
|
| EvaluationOfSelfEventTimeRelations.RemoveRelations |
|
| EvaluationOfTemporalRelations_ImplBase |
|
| EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations |
|
| EvaluationOfTemporalRelations_ImplBase.RemoveGoldAttributes |
|
| EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations |
|
| EvaluationOfTimeSpans |
|
| I2B2Data |
|
| NeuralEventEventRelationsCNNEvaluation |
|
| NeuralEventEventRelationsCNNEvaluation.AddClosure |
|
| NeuralEventEventRelationsCNNEvaluation.AddEEPotentialRelations |
|
| NeuralEventEventRelationsCNNEvaluation.CountCloseRelation |
|
| NeuralEventEventRelationsCNNEvaluation.Overlap2Contains |
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
|
| NeuralEventEventRelationsCNNEvaluation.RemoveRelations |
|
| NeuralEventTimeRelationsCNNEvaluation |
|
| NeuralEventTimeRelationsCNNEvaluation.AddClosure |
|
| NeuralEventTimeRelationsCNNEvaluation.AddContain2Overlap |
|
| NeuralEventTimeRelationsCNNEvaluation.AddFlippedOverlap |
|
| NeuralEventTimeRelationsCNNEvaluation.AddPotentialRelations |
|
| NeuralEventTimeRelationsCNNEvaluation.AddTransitiveContainsRelations |
|
| NeuralEventTimeRelationsCNNEvaluation.CountCloseRelation |
public static class CountSentenceContainsTimes extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
|
| NeuralEventTimeRelationsCNNEvaluation.Overlap2Contains |
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
|
| NeuralEventTimeRelationsCNNEvaluation.RemoveCrossSentenceRelations |
|
| NeuralEventTimeRelationsCNNEvaluation.RemoveEventEventRelations |
|
| NeuralEventTimeRelationsCNNEvaluation.RemoveNonUMLSEtEvents |
|
| NeuralEventTimeRelationsCNNEvaluation.RemoveRelations |
|
| NeuralEventTimeRelationsEvaluation |
|
| NeuralEventTimeRelationsEvaluation.AddClosure |
|
| NeuralEventTimeRelationsEvaluation.AddContain2Overlap |
|
| NeuralEventTimeRelationsEvaluation.AddFlippedOverlap |
|
| NeuralEventTimeRelationsEvaluation.AddPotentialRelations |
|
| NeuralEventTimeRelationsEvaluation.AddTransitiveContainsRelations |
|
| NeuralEventTimeRelationsEvaluation.CountCloseRelation |
public static class CountSentenceContainsTimes extends JCasAnnotator_ImplBase {
public static final String PARAM_SENTENCE_VIEW = "SentenceView";
|
| NeuralEventTimeRelationsEvaluation.Overlap2Contains |
For conflicting temporal relations on the same pair of arguments, if some of the relation types are "overlap", and "contains", remove "overlap" and keep "contains"
|
| NeuralEventTimeRelationsEvaluation.RemoveCrossSentenceRelations |
|
| NeuralEventTimeRelationsEvaluation.RemoveEventEventRelations |
|
| NeuralEventTimeRelationsEvaluation.RemoveNonUMLSEtEvents |
|
| NeuralEventTimeRelationsEvaluation.RemoveRelations |
|
| PrintRelations |
|
| RemoveTreeAlignedMentions |
|
| THYMEData |
A class for splitting the THYME data into appropriate sets for evaluation.
|