org.apache.ctakes.temporal.eval

Class EvaluationOfClearTKEventProperties

java.lang.Object

org.cleartk.eval.Evaluation_ImplBase<Integer,STATISTICS_TYPE>

org.apache.ctakes.temporal.eval.Evaluation_ImplBase<Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

org.apache.ctakes.temporal.eval.EvaluationOfClearTKEventProperties

public class EvaluationOfClearTKEventProperties
extends Evaluation_ImplBase<Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	EvaluationOfClearTKEventProperties.ClearEventProperties

Nested classes/interfaces inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

Evaluation_ImplBase.CopyFromGold, Evaluation_ImplBase.CopyFromSystem, Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations, Evaluation_ImplBase.EntityMentionRemover, Evaluation_ImplBase.EventMentionRemover, Evaluation_ImplBase.Options, Evaluation_ImplBase.PittHeaderAnnotator, Evaluation_ImplBase.RemoveEnclosedLookupWindows, Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator, Evaluation_ImplBase.Subcorpus, Evaluation_ImplBase.TimexAnnotationCorrector, Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes, Evaluation_ImplBase.WriteAnaforaXML, Evaluation_ImplBase.WriteI2B2XML, Evaluation_ImplBase.XMIReader, Evaluation_ImplBase.XMIWriter, Evaluation_ImplBase.XMLFormat

Field Summary

Fields inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

anaforaOutput, badNotes, GOLD_VIEW_NAME, i2b2Output, kernelParams, printErrors, printOverlapping, PROB_VIEW_NAME, rawTextDirectory, subcorpus, treebankDirectory, xmiDirectory, xmlDirectory, xmlFormat

Fields inherited from class org.cleartk.eval.Evaluation_ImplBase

baseDirectory

Constructor Summary

Constructors

Constructor and Description
EvaluationOfClearTKEventProperties(File baseDirectory, File rawTextDirectory, File xmlDirectory, Evaluation_ImplBase.XMLFormat xmlFormat, Evaluation_ImplBase.Subcorpus subcorpus, File xmiDirectory)

Method Summary

Modifier and Type	Method and Description
void	logClassificationErrors(File outputDir, String outputFilePrefix)
static void	main(String[] args)
protected Map<String,org.cleartk.eval.AnnotationStatistics<String>>	test(org.apache.uima.collection.CollectionReader collectionReader, File directory)
protected void	train(org.apache.uima.collection.CollectionReader collectionReader, File directory)

Methods inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

getCollectionReader, getPreprocessorAggregateBuilder, getRelationId, getTestItems, getTrainItems, getXMIReadingPreprocessorAggregateBuilder, getXMIWritingPreprocessorAggregateBuilder, prepareXMIsFor, selectExact, setI2B2Output

Methods inherited from class org.cleartk.eval.Evaluation_ImplBase

crossValidation, selectFoldTestItems, selectFoldTrainItems, trainAndTest

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EvaluationOfClearTKEventProperties

public EvaluationOfClearTKEventProperties(File baseDirectory,
                                          File rawTextDirectory,
                                          File xmlDirectory,
                                          Evaluation_ImplBase.XMLFormat xmlFormat,
                                          Evaluation_ImplBase.Subcorpus subcorpus,
                                          File xmiDirectory)

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

train

protected void train(org.apache.uima.collection.CollectionReader collectionReader,
                     File directory)
              throws Exception

Specified by:

train in class org.cleartk.eval.Evaluation_ImplBase<Integer,Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Throws:

Exception

test

protected Map<String,org.cleartk.eval.AnnotationStatistics<String>> test(org.apache.uima.collection.CollectionReader collectionReader,
                                                                         File directory)
                                                                  throws Exception

Specified by:

test in class org.cleartk.eval.Evaluation_ImplBase<Integer,Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Throws:

Exception

logClassificationErrors

public void logClassificationErrors(File outputDir,
                                    String outputFilePrefix)
                             throws IOException

Throws:

IOException