org.apache.ctakes.temporal.eval

Class EvaluationOfEventProperties

java.lang.Object

org.cleartk.eval.Evaluation_ImplBase<Integer,STATISTICS_TYPE>

org.apache.ctakes.temporal.eval.Evaluation_ImplBase<Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

org.apache.ctakes.temporal.eval.EvaluationOfEventProperties

public class EvaluationOfEventProperties
extends Evaluation_ImplBase<Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	EvaluationOfEventProperties.ClearEventProperties

Nested classes/interfaces inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

Evaluation_ImplBase.CopyFromGold, Evaluation_ImplBase.CopyFromSystem, Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations, Evaluation_ImplBase.EntityMentionRemover, Evaluation_ImplBase.EventMentionRemover, Evaluation_ImplBase.Options, Evaluation_ImplBase.PittHeaderAnnotator, Evaluation_ImplBase.RemoveEnclosedLookupWindows, Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator, Evaluation_ImplBase.Subcorpus, Evaluation_ImplBase.TimexAnnotationCorrector, Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes, Evaluation_ImplBase.WriteAnaforaXML, Evaluation_ImplBase.WriteI2B2XML, Evaluation_ImplBase.XMIReader, Evaluation_ImplBase.XMIWriter, Evaluation_ImplBase.XMLFormat

Field Summary

Fields

Modifier and Type	Field and Description
protected static EvaluationOfEventTimeRelations.ParameterSettings	allParams
protected static boolean	DEFAULT_BOTH_DIRECTIONS
protected static float	DEFAULT_DOWNSAMPLE
protected EvaluationOfEventTimeRelations.ParameterSettings	params
protected boolean	skipTrain
protected boolean	testOnTrain

Fields inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

anaforaOutput, badNotes, GOLD_VIEW_NAME, i2b2Output, kernelParams, printErrors, printOverlapping, PROB_VIEW_NAME, rawTextDirectory, subcorpus, treebankDirectory, xmiDirectory, xmlDirectory, xmlFormat

Fields inherited from class org.cleartk.eval.Evaluation_ImplBase

baseDirectory

Constructor Summary

Constructors

Constructor and Description
EvaluationOfEventProperties(File baseDirectory, File rawTextDirectory, File xmlDirectory, Evaluation_ImplBase.XMLFormat xmlFormat, Evaluation_ImplBase.Subcorpus subcorpus, File xmiDirectory, String kernelParams, EvaluationOfEventTimeRelations.ParameterSettings params)

Method Summary

Modifier and Type	Method and Description
void	logClassificationErrors(File outputDir, String outputFilePrefix)
static void	main(String[] args)
protected Map<String,org.cleartk.eval.AnnotationStatistics<String>>	test(org.apache.uima.collection.CollectionReader collectionReader, File directory)
protected void	train(org.apache.uima.collection.CollectionReader collectionReader, File directory)

Methods inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

getCollectionReader, getPreprocessorAggregateBuilder, getRelationId, getTestItems, getTrainItems, getXMIReadingPreprocessorAggregateBuilder, getXMIWritingPreprocessorAggregateBuilder, prepareXMIsFor, selectExact, setI2B2Output

Methods inherited from class org.cleartk.eval.Evaluation_ImplBase

crossValidation, selectFoldTestItems, selectFoldTrainItems, trainAndTest

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_BOTH_DIRECTIONS

protected static boolean DEFAULT_BOTH_DIRECTIONS

DEFAULT_DOWNSAMPLE

protected static float DEFAULT_DOWNSAMPLE

allParams

protected static EvaluationOfEventTimeRelations.ParameterSettings allParams

skipTrain

protected boolean skipTrain

testOnTrain

protected boolean testOnTrain

params

protected EvaluationOfEventTimeRelations.ParameterSettings params

Constructor Detail

EvaluationOfEventProperties

public EvaluationOfEventProperties(File baseDirectory,
                                   File rawTextDirectory,
                                   File xmlDirectory,
                                   Evaluation_ImplBase.XMLFormat xmlFormat,
                                   Evaluation_ImplBase.Subcorpus subcorpus,
                                   File xmiDirectory,
                                   String kernelParams,
                                   EvaluationOfEventTimeRelations.ParameterSettings params)

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

train

protected void train(org.apache.uima.collection.CollectionReader collectionReader,
                     File directory)
              throws Exception

Specified by:

train in class org.cleartk.eval.Evaluation_ImplBase<Integer,Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Throws:

Exception

test

protected Map<String,org.cleartk.eval.AnnotationStatistics<String>> test(org.apache.uima.collection.CollectionReader collectionReader,
                                                                         File directory)
                                                                  throws Exception

Specified by:

test in class org.cleartk.eval.Evaluation_ImplBase<Integer,Map<String,org.cleartk.eval.AnnotationStatistics<String>>>

Throws:

Exception

logClassificationErrors

public void logClassificationErrors(File outputDir,
                                    String outputFilePrefix)
                             throws IOException

Throws:

IOException