org.apache.ctakes.temporal.eval

Class EvaluationOfTemporalRelations_ImplBase

java.lang.Object

org.cleartk.eval.Evaluation_ImplBase<Integer,STATISTICS_TYPE>

org.apache.ctakes.temporal.eval.Evaluation_ImplBase<org.cleartk.eval.AnnotationStatistics<String>>

org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations_ImplBase

Direct Known Subclasses:

EvaluationOfBothEEAndETRelations, EvaluationOfClearTKRelations, EvaluationOfEventCoreference, EvaluationOfEventEventCRFRelations, EvaluationOfEventEventDeepPheRelations, EvaluationOfEventEventHybridModelsRelations, EvaluationOfEventEventRelations, EvaluationOfEventEventThymeRelations, EvaluationOfEventTimeDeepPheRelations, EvaluationOfEventTimeRelations, EvaluationOfI2B2TemporalRelations, EvaluationOfNeuralEEAndETRelations, EvaluationOfSelfEventTimeRelations, EventEventNeuralEvaluation, EventTimeNeuralEvaluation, NeuralEventEventRelationsCNNEvaluation, NeuralEventTimeRelationsCNNEvaluation, NeuralEventTimeRelationsEvaluation

public abstract class EvaluationOfTemporalRelations_ImplBase
extends Evaluation_ImplBase<org.cleartk.eval.AnnotationStatistics<String>>

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	EvaluationOfTemporalRelations_ImplBase.PreserveEventEventRelations
static class	EvaluationOfTemporalRelations_ImplBase.RemoveGoldAttributes
static class	EvaluationOfTemporalRelations_ImplBase.RemoveNonContainsRelations
static interface	EvaluationOfTemporalRelations_ImplBase.TempRelOptions

Nested classes/interfaces inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

Evaluation_ImplBase.CopyFromGold, Evaluation_ImplBase.CopyFromSystem, Evaluation_ImplBase.CopyNPChunksToLookupWindowAnnotations, Evaluation_ImplBase.EntityMentionRemover, Evaluation_ImplBase.EventMentionRemover, Evaluation_ImplBase.Options, Evaluation_ImplBase.PittHeaderAnnotator, Evaluation_ImplBase.RemoveEnclosedLookupWindows, Evaluation_ImplBase.SegmentsFromBracketedSectionTagsAnnotator, Evaluation_ImplBase.Subcorpus, Evaluation_ImplBase.TimexAnnotationCorrector, Evaluation_ImplBase.UriToDocumentTextAnnotatorCtakes, Evaluation_ImplBase.WriteAnaforaXML, Evaluation_ImplBase.WriteI2B2XML, Evaluation_ImplBase.XMIReader, Evaluation_ImplBase.XMIWriter, Evaluation_ImplBase.XMLFormat

Field Summary

Fields

Modifier and Type	Field and Description
protected static boolean	DEFAULT_BOTH_DIRECTIONS
protected static float	DEFAULT_DOWNSAMPLE
protected static double	DEFAULT_LAMBDA
protected static double	DEFAULT_SVM_C
protected static double	DEFAULT_SVM_G
protected static double	DEFAULT_TK
protected static EvaluationOfEventTimeRelations.ParameterSettings	defaultParams
protected EvaluationOfEventTimeRelations.ParameterSettings	params
protected boolean	printRelations

Fields inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

anaforaOutput, badNotes, GOLD_VIEW_NAME, i2b2Output, kernelParams, printErrors, printOverlapping, PROB_VIEW_NAME, rawTextDirectory, subcorpus, treebankDirectory, xmiDirectory, xmlDirectory, xmlFormat

Fields inherited from class org.cleartk.eval.Evaluation_ImplBase

baseDirectory

Constructor Summary

Constructors

Constructor and Description
EvaluationOfTemporalRelations_ImplBase(File baseDirectory, File rawTextDirectory, File xmlDirectory, Evaluation_ImplBase.XMLFormat xmlFormat, Evaluation_ImplBase.Subcorpus subcorpus, File xmiDirectory, File treebankDirectory, boolean printErrors, boolean printRelations, EvaluationOfEventTimeRelations.ParameterSettings params)

Method Summary

Modifier and Type	Method and Description
protected static Collection<BinaryTextRelation>	correctArgOrder(Collection<BinaryTextRelation> systemRelations, Collection<BinaryTextRelation> goldRelations)
protected static String	formatRelation(BinaryTextRelation relation)
protected static void	printRelationAnnotations(String fileName, Collection<BinaryTextRelation> relations)

Methods inherited from class org.apache.ctakes.temporal.eval.Evaluation_ImplBase

getCollectionReader, getPreprocessorAggregateBuilder, getRelationId, getTestItems, getTrainItems, getXMIReadingPreprocessorAggregateBuilder, getXMIWritingPreprocessorAggregateBuilder, prepareXMIsFor, selectExact, setI2B2Output

Methods inherited from class org.cleartk.eval.Evaluation_ImplBase

crossValidation, selectFoldTestItems, selectFoldTrainItems, test, train, trainAndTest

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_BOTH_DIRECTIONS

protected static boolean DEFAULT_BOTH_DIRECTIONS

DEFAULT_DOWNSAMPLE

protected static float DEFAULT_DOWNSAMPLE

DEFAULT_SVM_C

protected static double DEFAULT_SVM_C

DEFAULT_SVM_G

protected static double DEFAULT_SVM_G

DEFAULT_TK

protected static double DEFAULT_TK

DEFAULT_LAMBDA

protected static double DEFAULT_LAMBDA

defaultParams

protected static EvaluationOfEventTimeRelations.ParameterSettings defaultParams

params

protected EvaluationOfEventTimeRelations.ParameterSettings params

printRelations

protected boolean printRelations

Constructor Detail

EvaluationOfTemporalRelations_ImplBase

public EvaluationOfTemporalRelations_ImplBase(File baseDirectory,
                                              File rawTextDirectory,
                                              File xmlDirectory,
                                              Evaluation_ImplBase.XMLFormat xmlFormat,
                                              Evaluation_ImplBase.Subcorpus subcorpus,
                                              File xmiDirectory,
                                              File treebankDirectory,
                                              boolean printErrors,
                                              boolean printRelations,
                                              EvaluationOfEventTimeRelations.ParameterSettings params)

Method Detail

correctArgOrder

protected static Collection<BinaryTextRelation> correctArgOrder(Collection<BinaryTextRelation> systemRelations,
                                                                Collection<BinaryTextRelation> goldRelations)

printRelationAnnotations

protected static void printRelationAnnotations(String fileName,
                                               Collection<BinaryTextRelation> relations)

formatRelation

protected static String formatRelation(BinaryTextRelation relation)