org.apache.ctakes.assertion.medfacts.i2b2.api

Class SingleDocumentProcessorCtakes

java.lang.Object

org.apache.ctakes.assertion.stub.SingleDocumentProcessor

org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes

public class SingleDocumentProcessorCtakes
extends SingleDocumentProcessor

Field Summary

Fields

Modifier and Type	Field and Description
protected org.apache.uima.jcas.JCas	jcas

Fields inherited from class org.apache.ctakes.assertion.stub.SingleDocumentProcessor

arrayOfArrayOfTokens, converter2

Constructor Summary

Constructors

Constructor and Description
SingleDocumentProcessorCtakes()

Method Summary

Modifier and Type	Method and Description
List<LineAndTokenPosition>	calculateBeginAndEndOfConcept(ApiConcept problem)
List<LineAndTokenPosition>	calculateBeginAndEndOfConcept(int problemBegin, int problemEnd) delegate to converter to determine offset.
ArrayList<ArrayList<String>>	construct2DTokenArray(org.apache.uima.jcas.JCas jcas)
LineAndTokenPosition	convertCharacterOffsetToLineToken(int characterOffset) delegate to converter to determine offset.
org.apache.uima.jcas.JCas	getJcas()
void	postprocess()
protected void	preExecutionTest()
void	preprocess()
void	setJcas(org.apache.uima.jcas.JCas jcas)

Methods inherited from class org.apache.ctakes.assertion.stub.SingleDocumentProcessor

addConcept, getAssertionTypeMap, getTokenArrays, processSingleDocument, setAssertionDecoderConfiguration, setContents, setConverter2

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

jcas

protected org.apache.uima.jcas.JCas jcas

Constructor Detail

SingleDocumentProcessorCtakes

public SingleDocumentProcessorCtakes()

Method Detail

getJcas

public org.apache.uima.jcas.JCas getJcas()

setJcas

public void setJcas(org.apache.uima.jcas.JCas jcas)

preExecutionTest

protected void preExecutionTest()

Overrides:

preExecutionTest in class SingleDocumentProcessor

preprocess

public void preprocess()

Overrides:

preprocess in class SingleDocumentProcessor

postprocess

public void postprocess()

construct2DTokenArray

public ArrayList<ArrayList<String>> construct2DTokenArray(org.apache.uima.jcas.JCas jcas)

convertCharacterOffsetToLineToken

public LineAndTokenPosition convertCharacterOffsetToLineToken(int characterOffset)

delegate to converter to determine offset.

Overrides:

convertCharacterOffsetToLineToken in class SingleDocumentProcessor

calculateBeginAndEndOfConcept

public List<LineAndTokenPosition> calculateBeginAndEndOfConcept(ApiConcept problem)

Overrides:

calculateBeginAndEndOfConcept in class SingleDocumentProcessor

calculateBeginAndEndOfConcept

public List<LineAndTokenPosition> calculateBeginAndEndOfConcept(int problemBegin,
                                                                int problemEnd)

delegate to converter to determine offset.