org.apache.ctakes.ytex.kernel.model

Class ConcRel

java.lang.Object

org.apache.ctakes.ytex.kernel.model.ConcRel

All Implemented Interfaces:

Serializable

public class ConcRel
extends Object
implements Serializable

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ConcRel(String cui, int nodeIndex)

Method Summary

Modifier and Type	Method and Description
void	constructRel(List<ConcRel> db) reconstruct the relationships to other ConcRel objects
static List<String>	crListToString(List<ConcRel> crList)
int	depthMax()
boolean	equals(Object obj)
Set<ConcRel>	getChildren()
int[]	getChildrenArray()
String	getConceptID()
short	getDepth()
double	getIntrinsicInfoContent()
static ObjPair<ConcRel,Integer>	getLeastCommonConcept(ConcRel c1, ConcRel c2) Deprecated.
static int	getLeastCommonConcept(ConcRel c1, ConcRel c2, Set<ConcRel> lcses, Map<ConcRel,LCSPath> paths)
int	getNodeIndex()
Set<ConcRel>	getParents()
int[]	getParentsArray()
void	getPath(List<ConcRel> lpath, List<List<ConcRel>> allPaths, int depth, int depthMax) recursively build all paths to root from a concept - add elements from set of parents.
boolean	hasAncestor(String cui) is the specified concept an ancestor of this concept?
int	hashCode()
boolean	isLeaf()
boolean	isRoot()
void	setChildrenArray(int[] childrenArray)
void	setConceptID(String nodeCUI)
void	setDepth(short depth)
void	setIntrinsicInfoContent(double intrinsicInfoContent)
void	setNodeIndex(int nodeIndex)
void	setParentsArray(int[] parentsArray)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ConcRel

public ConcRel(String cui,
               int nodeIndex)

Method Detail

crListToString

public static List<String> crListToString(List<ConcRel> crList)

getLeastCommonConcept

public static ObjPair<ConcRel,Integer> getLeastCommonConcept(ConcRel c1,
                                                             ConcRel c2)

Deprecated.

get least common subsumer of the specified concepts and its distance from root.

Parameters:

c1 -

c2 -

Returns:

getLeastCommonConcept

public static int getLeastCommonConcept(ConcRel c1,
                                        ConcRel c2,
                                        Set<ConcRel> lcses,
                                        Map<ConcRel,LCSPath> paths)

Parameters:

c1 - concept1

c2 - concept2

lcses - least common subsumers, required

paths - paths between concepts via lcses, optional. Key - lcs. Value - 2 element list corresponding to paths to lcs from c1 and c2

Returns:

path length, -1 if no lcs

constructRel

public void constructRel(List<ConcRel> db)

reconstruct the relationships to other ConcRel objects

Parameters:

db -

depthMax

public int depthMax()

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getChildren

public Set<ConcRel> getChildren()

getChildrenArray

public int[] getChildrenArray()

getConceptID

public String getConceptID()

getDepth

public short getDepth()

getIntrinsicInfoContent

public double getIntrinsicInfoContent()

getNodeIndex

public int getNodeIndex()

getParents

public Set<ConcRel> getParents()

getParentsArray

public int[] getParentsArray()

getPath

public void getPath(List<ConcRel> lpath,
                    List<List<ConcRel>> allPaths,
                    int depth,
                    int depthMax)

recursively build all paths to root from a concept - add elements from set of parents.

Parameters:

lpath - current path from children to this concept

allPaths - list of all paths

depth - current depth

depthMax -

hasAncestor

public boolean hasAncestor(String cui)

is the specified concept an ancestor of this concept?

Parameters:

cui -

Returns:

hashCode

public int hashCode()

Overrides:

hashCode in class Object

isLeaf

public boolean isLeaf()

isRoot

public boolean isRoot()

setChildrenArray

public void setChildrenArray(int[] childrenArray)

setConceptID

public void setConceptID(String nodeCUI)

setDepth

public void setDepth(short depth)

setIntrinsicInfoContent

public void setIntrinsicInfoContent(double intrinsicInfoContent)

setNodeIndex

public void setNodeIndex(int nodeIndex)

setParentsArray

public void setParentsArray(int[] parentsArray)

toString

public String toString()

Overrides:

toString in class Object