org.apache.ctakes.ytex.uima.mapper

Class DocumentMapperServiceImpl

java.lang.Object

org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl

All Implemented Interfaces:

DocumentMapperService, org.springframework.beans.factory.InitializingBean

public class DocumentMapperServiceImpl
extends Object
implements DocumentMapperService, org.springframework.beans.factory.InitializingBean

Map document annotations to the database.

Author:

vijay

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DocumentMapperServiceImpl.AnnoFSAttribute holder for FeatureStruct attributes
static class	DocumentMapperServiceImpl.AnnoLink
static interface	DocumentMapperServiceImpl.ChunkPreparedStatementSetter<T>

Constructor Summary

Constructors

Constructor and Description
DocumentMapperServiceImpl()

Method Summary

Modifier and Type	Method and Description
void	afterPropertiesSet() load the map of uima annotation class name to mapper class name from the database.
Set<AnnoMappingInfo>	getAnnoMappingInfos()
int	getBatchSize()
DataSource	getDataSource()
String	getDbSchema()
String	getDbType()
String	getDialectClassName()
Map<String,AnnoMappingInfo>	getMapAnnoMappingInfo()
org.hibernate.SessionFactory	getSessionFactory()
org.springframework.transaction.PlatformTransactionManager	getTransactionManager()
Properties	getYtexProperties()
void	initDocKeyMapping()
Integer	saveDocument(org.apache.uima.jcas.JCas jcas, String analysisBatch, boolean bStoreDocText, boolean bStoreCAS, boolean bInsertAnnotationContainmentLinks, Set<String> setTypesToIgnore) Save Document and all mapped annotations.
void	setAnnoMappingInfos(Set<AnnoMappingInfo> annoMappingInfos) initialize mapAnnoMappingInfo from the set
void	setBatchSize(int batchSize)
void	setDataSource(DataSource dataSource)
void	setDbSchema(String dbSchema)
void	setDbType(String dbType)
void	setDialectClassName(String dialectClassName)
void	setMapAnnoMappingInfo(Map<String,AnnoMappingInfo> mapAnnoMappingInfo)
void	setSessionFactory(org.hibernate.SessionFactory sessionFactory)
void	setTransactionManager(org.springframework.transaction.PlatformTransactionManager transactionManager)
void	setYtexProperties(Properties ytexProperties)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DocumentMapperServiceImpl

public DocumentMapperServiceImpl()

Method Detail

afterPropertiesSet

public void afterPropertiesSet()

load the map of uima annotation class name to mapper class name from the database. For some reason this is not getting executed within a transaction. Manually wrap the db access in a transaction.

Specified by:

afterPropertiesSet in interface org.springframework.beans.factory.InitializingBean

Throws:

Exception

getAnnoMappingInfos

public Set<AnnoMappingInfo> getAnnoMappingInfos()

getBatchSize

public int getBatchSize()

getDataSource

public DataSource getDataSource()

getDbSchema

public String getDbSchema()

getDbType

public String getDbType()

getDialectClassName

public String getDialectClassName()

getMapAnnoMappingInfo

public Map<String,AnnoMappingInfo> getMapAnnoMappingInfo()

getSessionFactory

public org.hibernate.SessionFactory getSessionFactory()

getTransactionManager

public org.springframework.transaction.PlatformTransactionManager getTransactionManager()

getYtexProperties

public Properties getYtexProperties()

initDocKeyMapping

public void initDocKeyMapping()

saveDocument

public Integer saveDocument(org.apache.uima.jcas.JCas jcas,
                            String analysisBatch,
                            boolean bStoreDocText,
                            boolean bStoreCAS,
                            boolean bInsertAnnotationContainmentLinks,
                            Set<String> setTypesToIgnore)

Description copied from interface: DocumentMapperService

Save Document and all mapped annotations.

Specified by:

saveDocument in interface DocumentMapperService

analysisBatch - optional

Returns:

document id

setAnnoMappingInfos

public void setAnnoMappingInfos(Set<AnnoMappingInfo> annoMappingInfos)

initialize mapAnnoMappingInfo from the set

Parameters:

annoMappingInfos -

setBatchSize

public void setBatchSize(int batchSize)

setDataSource

public void setDataSource(DataSource dataSource)

setDbSchema

public void setDbSchema(String dbSchema)

setDbType

public void setDbType(String dbType)

setDialectClassName

public void setDialectClassName(String dialectClassName)

setMapAnnoMappingInfo

public void setMapAnnoMappingInfo(Map<String,AnnoMappingInfo> mapAnnoMappingInfo)

setSessionFactory

public void setSessionFactory(org.hibernate.SessionFactory sessionFactory)

setTransactionManager

public void setTransactionManager(org.springframework.transaction.PlatformTransactionManager transactionManager)

setYtexProperties

public void setYtexProperties(Properties ytexProperties)