org.apache.ctakes.assertion.pipelines

Class GoldEntityAndAttributeReaderPipelineForSeedCorpus

java.lang.Object

org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus

public class GoldEntityAndAttributeReaderPipelineForSeedCorpus
extends Object

A class for testing the reader for the gold standard relation data. Currently this class runs the reader and saves the resulting annotations as xmi files.

Author:

dmitriy dligach, matt coarr

Constructor Summary

Constructors

Constructor and Description
GoldEntityAndAttributeReaderPipelineForSeedCorpus()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
static void	readI2B2Challenge2010(File parentDirectory, File preprocessedDirectory)
static void	readMiPACQ(File inputDirectory, File preprocessedDirectory, File testDirectory, File devDirectory)
static void	readNegexTestSet(File inputFile, File preprocessedDirectory)
static void	readSharpSeedUmls(File releaseDirectory, File trainDirectory, File testDirectory, File devDirectory)
static void	readSharpSeedUmlsCem(File parentDirectory)
static void	readSharpSeedUmlsCem(File parentDirectory, File trainDirectory, File testDirectory, File devDirectory)
static void	readSharpStratifiedUmls(File releaseDirectory, File trainDirectory, File testDirectory, File devDirectory)
static void	readSharpUmls(File[] sections, File trainDirectory, File testDirectory, File devDirectory, com.google.common.base.Function<File,SharpCorpusSplit.Subcorpus> splitFunction)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GoldEntityAndAttributeReaderPipelineForSeedCorpus

public GoldEntityAndAttributeReaderPipelineForSeedCorpus()

Method Detail

main

public static void main(String[] args)
                 throws org.apache.uima.UIMAException,
                        IOException

Throws:

org.apache.uima.UIMAException

IOException

readSharpSeedUmlsCem

public static void readSharpSeedUmlsCem(File parentDirectory)
                                 throws org.apache.uima.resource.ResourceInitializationException,
                                        org.apache.uima.UIMAException,
                                        IOException

Throws:

org.apache.uima.resource.ResourceInitializationException

org.apache.uima.UIMAException

IOException

readSharpSeedUmlsCem

public static void readSharpSeedUmlsCem(File parentDirectory,
                                        File trainDirectory,
                                        File testDirectory,
                                        File devDirectory)
                                 throws org.apache.uima.resource.ResourceInitializationException,
                                        org.apache.uima.UIMAException,
                                        IOException

Throws:

org.apache.uima.resource.ResourceInitializationException

org.apache.uima.UIMAException

IOException

readSharpStratifiedUmls

public static void readSharpStratifiedUmls(File releaseDirectory,
                                           File trainDirectory,
                                           File testDirectory,
                                           File devDirectory)
                                    throws org.apache.uima.UIMAException,
                                           IOException

Throws:

org.apache.uima.UIMAException

IOException

readSharpSeedUmls

public static void readSharpSeedUmls(File releaseDirectory,
                                     File trainDirectory,
                                     File testDirectory,
                                     File devDirectory)
                              throws org.apache.uima.UIMAException,
                                     IOException

Throws:

org.apache.uima.UIMAException

IOException

readSharpUmls

public static void readSharpUmls(File[] sections,
                                 File trainDirectory,
                                 File testDirectory,
                                 File devDirectory,
                                 com.google.common.base.Function<File,SharpCorpusSplit.Subcorpus> splitFunction)
                          throws org.apache.uima.UIMAException,
                                 IOException

Throws:

org.apache.uima.UIMAException

IOException

readI2B2Challenge2010

public static void readI2B2Challenge2010(File parentDirectory,
                                         File preprocessedDirectory)
                                  throws org.apache.uima.resource.ResourceInitializationException,
                                         org.apache.uima.UIMAException,
                                         IOException

Throws:

org.apache.uima.resource.ResourceInitializationException

org.apache.uima.UIMAException

IOException

readNegexTestSet

public static void readNegexTestSet(File inputFile,
                                    File preprocessedDirectory)
                             throws org.apache.uima.resource.ResourceInitializationException,
                                    org.apache.uima.UIMAException,
                                    IOException

Throws:

org.apache.uima.resource.ResourceInitializationException

org.apache.uima.UIMAException

IOException

readMiPACQ

public static void readMiPACQ(File inputDirectory,
                              File preprocessedDirectory,
                              File testDirectory,
                              File devDirectory)
                       throws org.apache.uima.resource.ResourceInitializationException,
                              org.apache.uima.UIMAException,
                              IOException

Throws:

org.apache.uima.resource.ResourceInitializationException

org.apache.uima.UIMAException

IOException