org.apache.ctakes.assertion.eval

Class MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

org.apache.ctakes.assertion.eval.MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

@PipeBitInfo(name="Gold View Merger",
             description="Read in gold annotations from XMI and create a view within the current CAS, and copy the gold annotations into the new view within the current CAS.",
             role=SPECIAL,
             dependencies=DOCUMENT_ID,
             products=IDENTIFIED_ANNOTATION)
public class MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas
extends org.apache.uima.fit.component.JCasAnnotator_ImplBase

Read in gold annotations from XMI and create a view within the current CAS, and copy the gold annotations into the new view within the current CAS. Written to handle testing the cTAKES 2.5 assertion (polarity) value against the gold standard, using XMI that had already been created by the Apache cTAKES 3.0 gold standard reader.

Constructor Summary

Constructors

Constructor and Description
MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas()

Method Summary

Modifier and Type	Method and Description
static org.apache.uima.collection.CollectionReader	getCollectionReader(List<File> items)
void	initialize(org.apache.uima.UimaContext context)
void	process(org.apache.uima.jcas.JCas jCas) Copy all annotations of the given types from the corresponding cas that has a gold view to the current cas

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas

public MergeGoldViewFromOneCasIntoInitialViewOfAnotherCas()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext context)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.fit.component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

process

public void process(org.apache.uima.jcas.JCas jCas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Copy all annotations of the given types from the corresponding cas that has a gold view to the current cas

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

getCollectionReader

public static org.apache.uima.collection.CollectionReader getCollectionReader(List<File> items)
                                                                       throws org.apache.uima.resource.ResourceInitializationException

Throws:

org.apache.uima.resource.ResourceInitializationException