org.apache.ctakes.dictionary.lookup.ae

Class UmlsToSnomedDbConsumerImpl

java.lang.Object

org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl

org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl

org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl

All Implemented Interfaces:

LookupConsumer

public class UmlsToSnomedDbConsumerImpl
extends UmlsToSnomedConsumerImpl

Implementation that takes UMLS dictionary lookup hits and stores as NamedEntity objects only the ones that have a SNOMED synonym, by looking in a database for SNOMED codes that map to the identified CUI.

Author:

Mayo Clinic

Nested Class Summary

Nested classes/interfaces inherited from class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl

BaseLookupConsumerImpl.LookupHitKey

Field Summary

Fields inherited from class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl

props

Constructor Summary

Constructors

Constructor and Description
UmlsToSnomedDbConsumerImpl(org.apache.uima.UimaContext uimaContext, Properties properties)
UmlsToSnomedDbConsumerImpl(org.apache.uima.UimaContext uimaContext, Properties properties, int maxListSize)

Method Summary

Modifier and Type	Method and Description
void	close()
protected Set<String>	getSnomedCodes(String umlsCode) Queries the given UMLS CUI against the DB.

Methods inherited from class org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedConsumerImpl

consumeHits

Methods inherited from class org.apache.ctakes.dictionary.lookup.ae.BaseLookupConsumerImpl

createLookupHitMap, organizeByOffset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UmlsToSnomedDbConsumerImpl

public UmlsToSnomedDbConsumerImpl(org.apache.uima.UimaContext uimaContext,
                                  Properties properties,
                                  int maxListSize)
                           throws Exception

Throws:

Exception

UmlsToSnomedDbConsumerImpl

public UmlsToSnomedDbConsumerImpl(org.apache.uima.UimaContext uimaContext,
                                  Properties properties)
                           throws Exception

Throws:

Exception

Method Detail

close

public void close()

getSnomedCodes

protected Set<String> getSnomedCodes(String umlsCode)
                              throws SQLException

Queries the given UMLS CUI against the DB. Re`turns a set of SNOMED codes.

Specified by:

getSnomedCodes in class UmlsToSnomedConsumerImpl

Parameters:

umlsCode - -

Returns:

-

Throws:

SQLException