Uses of Interface
org.apache.ctakes.core.util.collection.CollectionMap

Packages that use CollectionMap

Package	Description
org.apache.ctakes.core.util.collection
org.apache.ctakes.dictionary.lookup2.ae
org.apache.ctakes.dictionary.lookup2.concept
org.apache.ctakes.dictionary.lookup2.consumer
org.apache.ctakes.dictionary.lookup2.dictionary

Uses of CollectionMap in org.apache.ctakes.core.util.collection

Classes in org.apache.ctakes.core.util.collection that implement CollectionMap

Modifier and Type	Class and Description
class	ArrayListMap<K,V> Author: SPF Affiliation: CHIP-NLP Date: 7/23/14
class	DefaultCollectionMap<K,V,T extends Collection<V>>
class	EnumSetMap<K extends Enum<K>,V>
class	HashSetMap<K,V> Author: SPF Affiliation: CHIP-NLP Date: 6/24/14
class	ImmutableCollectionMap<K,V,T extends Collection<V>> Author: SPF Affiliation: CHIP-NLP Date: 9/5/2014

Constructors in org.apache.ctakes.core.util.collection with parameters of type CollectionMap

Constructor and Description
ImmutableCollectionMap(CollectionMap<K,V,T> collectionMap)

Uses of CollectionMap in org.apache.ctakes.dictionary.lookup2.ae

Methods in org.apache.ctakes.dictionary.lookup2.ae with parameters of type CollectionMap

Modifier and Type	Method and Description
void	DefaultJCasTermAnnotator.findTerms(RareWordDictionary dictionary, List<FastLookupToken> allTokens, List<Integer> lookupTokenIndices, CollectionMap<TextSpan,Long,? extends Collection<Long>> termsFromDictionary) Given a dictionary, tokens, and lookup token indices, populate a terms collection with discovered terms
void	JCasTermAnnotator.findTerms(RareWordDictionary dictionary, List<FastLookupToken> allTokens, List<Integer> lookupTokenIndices, CollectionMap<TextSpan,Long,? extends Collection<Long>> termsFromDictionary) Given a dictionary, tokens, and lookup token indices, populate a terms collection with discovered terms
void	OverlapJCasTermAnnotator.findTerms(RareWordDictionary dictionary, List<FastLookupToken> allTokens, List<Integer> lookupTokenIndices, CollectionMap<TextSpan,Long,? extends Collection<Long>> termsFromDictionary) Given a dictionary, tokens, and lookup token indices, populate a terms collection with discovered terms

Method parameters in org.apache.ctakes.dictionary.lookup2.ae with type arguments of type CollectionMap

Modifier and Type	Method and Description
void	AbstractJCasTermAnnotator.processWindow(org.apache.uima.jcas.JCas jcas, org.apache.uima.jcas.tcas.Annotation window, Map<RareWordDictionary,CollectionMap<TextSpan,Long,? extends Collection<Long>>> dictionaryTerms) Processes a window of annotations for dictionary terms
void	WindowProcessor.processWindow(org.apache.uima.jcas.JCas jcas, org.apache.uima.jcas.tcas.Annotation window, Map<RareWordDictionary,CollectionMap<TextSpan,Long,? extends Collection<Long>>> dictionaryTerms) Processes a window of annotations for dictionary terms

Uses of CollectionMap in org.apache.ctakes.dictionary.lookup2.concept

Constructors in org.apache.ctakes.dictionary.lookup2.concept with parameters of type CollectionMap

Constructor and Description
DefaultConcept(String cui, String preferredText, CollectionMap<String,String,? extends Collection<String>> codes)

Uses of CollectionMap in org.apache.ctakes.dictionary.lookup2.consumer

Methods in org.apache.ctakes.dictionary.lookup2.consumer that return CollectionMap

Modifier and Type	Method and Description
static CollectionMap<TextSpan,Long,? extends Collection<Long>>	PrecisionTermConsumer.createPreciseTerms(CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms) Refine a collection of dictionary terms to only contain the most specific variations: "colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap

Methods in org.apache.ctakes.dictionary.lookup2.consumer with parameters of type CollectionMap

Modifier and Type	Method and Description
void	AbstractTermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	AbstractTermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	SemanticCleanupTermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts) Refine a collection of dictionary terms to only contain the most specific variations: "colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap.
void	SemanticCleanupTermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts) Refine a collection of dictionary terms to only contain the most specific variations: "colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap.
void	TermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	TermConsumer.consumeHits(org.apache.uima.jcas.JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	DefaultTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String codingScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	DefaultTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String codingScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	PrecisionTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String defaultScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms, CollectionMap<Long,Concept,? extends Collection<Concept>> conceptMap) Only uses the largest spans for the type
void	PrecisionTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String defaultScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms, CollectionMap<Long,Concept,? extends Collection<Concept>> conceptMap) Only uses the largest spans for the type
void	SemanticCleanupTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String defaultScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms, CollectionMap<Long,Concept,? extends Collection<Concept>> conceptMap)
void	SemanticCleanupTermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String defaultScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms, CollectionMap<Long,Concept,? extends Collection<Concept>> conceptMap)
void	TermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String codingScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
void	TermConsumer.consumeTypeIdHits(org.apache.uima.jcas.JCas jcas, String codingScheme, int cTakesSemantic, CollectionMap<TextSpan,Long,? extends Collection<Long>> textSpanCuis, CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)
static CollectionMap<TextSpan,Long,? extends Collection<Long>>	PrecisionTermConsumer.createPreciseTerms(CollectionMap<TextSpan,Long,? extends Collection<Long>> semanticTerms) Refine a collection of dictionary terms to only contain the most specific variations: "colon cancer" instead of "cancer", performed by span inclusion /complete containment, not overlap
protected static Collection<Integer>	AbstractTermConsumer.getUsedcTakesSemantics(CollectionMap<Long,Concept,? extends Collection<Concept>> cuiConcepts)

Uses of CollectionMap in org.apache.ctakes.dictionary.lookup2.dictionary

Methods in org.apache.ctakes.dictionary.lookup2.dictionary that return CollectionMap

Modifier and Type	Method and Description
static CollectionMap<String,RareWordTerm,List<RareWordTerm>>	RareWordTermMapCreator.createRareWordTermMap(Iterable<RareWordTermMapCreator.CuiTerm> cuiTerms)

Constructors in org.apache.ctakes.dictionary.lookup2.dictionary with parameters of type CollectionMap

Constructor and Description
MemRareWordDictionary(String name, CollectionMap<String,RareWordTerm,? extends Collection<RareWordTerm>> rareWordTermMap)