org.apache.ctakes.ytex.umls.dao

Class UMLSDaoImpl

java.lang.Object

org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl

All Implemented Interfaces:

UMLSDao

public class UMLSDaoImpl
extends java.lang.Object
implements UMLSDao

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String[]	EXCLUDE_RELA
static java.lang.String[]	INCLUDE_REL
private static Log	log
(package private) SessionFactory	sessionFactory
private JdbcTemplate	t

Fields inherited from interface org.apache.ctakes.ytex.umls.dao.UMLSDao

cuiPattern

Constructor Summary

Constructors

Constructor and Description
UMLSDaoImpl()

Method Summary

Methods

Modifier and Type	Method and Description
void	deleteAuiFirstWord()
java.util.List<java.lang.Object[]>	getAllAuiStr(java.lang.String lastAui) sets up the umls_aui_fword table.
javax.sql.DataSource	getDataSource()
java.lang.String	getLastAui() Get the 'last' UmlsAuiFirstWord.
java.util.Map<java.lang.String,java.lang.String>	getNames(java.util.List<java.lang.String> subList)
java.util.HashSet<java.lang.Integer>	getRXNORMCuis() get a set of all cuis in RXNORM.
SessionFactory	getSessionFactory()
void	insertAuiFirstWord(java.util.List<UmlsAuiFirstWord> listAuiFirstWord)
boolean	isRXNORMCui(java.lang.String cui)
void	setDataSource(javax.sql.DataSource ds)
void	setSessionFactory(SessionFactory sessionFactory)
private void	updateNames(java.lang.String queryName, java.util.List<java.lang.String> subList, java.util.Map<java.lang.String,java.lang.String> names)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

INCLUDE_REL

public static final java.lang.String[] INCLUDE_REL

EXCLUDE_RELA

public static final java.lang.String[] EXCLUDE_RELA

log

private static final Log log

sessionFactory

SessionFactory sessionFactory

t

private JdbcTemplate t

Constructor Detail

UMLSDaoImpl

public UMLSDaoImpl()

Method Detail

getSessionFactory

public SessionFactory getSessionFactory()

setSessionFactory

public void setSessionFactory(SessionFactory sessionFactory)

setDataSource

public void setDataSource(javax.sql.DataSource ds)

getDataSource

public javax.sql.DataSource getDataSource()

getAllAuiStr

public java.util.List<java.lang.Object[]> getAllAuiStr(java.lang.String lastAui)

sets up the umls_aui_fword table.

Specified by:

getAllAuiStr in interface UMLSDao

deleteAuiFirstWord

public void deleteAuiFirstWord()

Specified by:

deleteAuiFirstWord in interface UMLSDao

insertAuiFirstWord

public void insertAuiFirstWord(java.util.List<UmlsAuiFirstWord> listAuiFirstWord)

Specified by:

insertAuiFirstWord in interface UMLSDao

getNames

public java.util.Map<java.lang.String,java.lang.String> getNames(java.util.List<java.lang.String> subList)

Specified by:

getNames in interface UMLSDao

updateNames

private void updateNames(java.lang.String queryName,
               java.util.List<java.lang.String> subList,
               java.util.Map<java.lang.String,java.lang.String> names)

getLastAui

public java.lang.String getLastAui()

Description copied from interface: UMLSDao

Get the 'last' UmlsAuiFirstWord. We insert them in ascending order of auis.

Specified by:

getLastAui in interface UMLSDao

Returns:

getRXNORMCuis

public java.util.HashSet<java.lang.Integer> getRXNORMCuis()

Description copied from interface: UMLSDao

get a set of all cuis in RXNORM. used for DrugNer - need to set the coding scheme to RXNORM. Convert the cui into a numeric representation (chop off the preceding 'C') to save memory.

Specified by:

getRXNORMCuis in interface UMLSDao

Returns:

isRXNORMCui

public boolean isRXNORMCui(java.lang.String cui)

Specified by:

isRXNORMCui in interface UMLSDao