public class MetaMapToCTakesAnnotator
extends JCasAnnotator_ImplBase
Modifier and Type | Class and Description |
---|---|
static class |
MetaMapToCTakesAnnotator.NegSpan |
Modifier and Type | Field and Description |
---|---|
private boolean |
checkMedications |
private static Log |
log |
private static java.lang.String[] |
medicationAbrs |
private static java.util.Set<java.lang.String> |
setMedicationAbrs |
Constructor and Description |
---|
MetaMapToCTakesAnnotator() |
Modifier and Type | Method and Description |
---|---|
private boolean |
addConcept(JCas jcas,
java.util.Map<java.lang.String,OntologyConcept> concepts,
Annotation annoCandidate,
Feature cuiFeature,
Feature tuiFeature,
boolean bMedication)
add a concept to the map of concepts for the current named entity.
|
private void |
addNamedEntity(JCas jcas,
int begin,
int end,
java.util.Map<java.lang.String,OntologyConcept> concepts,
boolean bMedication,
java.util.Set<MetaMapToCTakesAnnotator.NegSpan> negSet) |
private java.util.Set<MetaMapToCTakesAnnotator.NegSpan> |
getNegatedSpans(JCas jcas)
get all negated spans
|
void |
initialize(UimaContext aContext) |
void |
process(JCas jcas) |
private static final Log log
private boolean checkMedications
private static final java.lang.String[] medicationAbrs
private static java.util.Set<java.lang.String> setMedicationAbrs
private java.util.Set<MetaMapToCTakesAnnotator.NegSpan> getNegatedSpans(JCas jcas)
jcas
- public void process(JCas jcas) throws AnalysisEngineProcessException
AnalysisEngineProcessException
private void addNamedEntity(JCas jcas, int begin, int end, java.util.Map<java.lang.String,OntologyConcept> concepts, boolean bMedication, java.util.Set<MetaMapToCTakesAnnotator.NegSpan> negSet)
private boolean addConcept(JCas jcas, java.util.Map<java.lang.String,OntologyConcept> concepts, Annotation annoCandidate, Feature cuiFeature, Feature tuiFeature, boolean bMedication)
jcas
- concepts
- annoCandidate
- cuiFeature
- tuiFeature
- bMedication
- public void initialize(UimaContext aContext) throws ResourceInitializationException
ResourceInitializationException