org.apache.ctakes.typesystem.type.textsem

Class LabMention_Type

java.lang.Object

Annotation_Type

org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

org.apache.ctakes.typesystem.type.textsem.EventMention_Type

org.apache.ctakes.typesystem.type.textsem.LabMention_Type

public class LabMention_Type
extends EventMention_Type

A text string that refers to a (Lab) Event. This is from the UMLS semantic group of Laboratory Procedures. Based on generic Clinical Element Models (CEMs) Updated by JCasGen Wed Sep 30 11:06:15 EDT 2015

Field Summary

Fields

Modifier and Type	Field and Description
(package private) Feature	casFeat_abnormalInterpretation
(package private) Feature	casFeat_deltaFlag
(package private) Feature	casFeat_labValue
(package private) Feature	casFeat_ordinalInterpretation
(package private) Feature	casFeat_referenceRangeNarrative
(package private) int	casFeatCode_abnormalInterpretation
(package private) int	casFeatCode_deltaFlag
(package private) int	casFeatCode_labValue
(package private) int	casFeatCode_ordinalInterpretation
(package private) int	casFeatCode_referenceRangeNarrative
static boolean	featOkTst
private FSGenerator	fsGenerator
static int	typeIndexID

Fields inherited from class org.apache.ctakes.typesystem.type.textsem.EventMention_Type

casFeat_event, casFeatCode_event

Fields inherited from class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

casFeat_conditional, casFeat_confidence, casFeat_discoveryTechnique, casFeat_generic, casFeat_historyOf, casFeat_id, casFeat_ontologyConceptArr, casFeat_originalText, casFeat_polarity, casFeat_segmentID, casFeat_sentenceID, casFeat_subject, casFeat_typeID, casFeat_uncertainty, casFeatCode_conditional, casFeatCode_confidence, casFeatCode_discoveryTechnique, casFeatCode_generic, casFeatCode_historyOf, casFeatCode_id, casFeatCode_ontologyConceptArr, casFeatCode_originalText, casFeatCode_polarity, casFeatCode_segmentID, casFeatCode_sentenceID, casFeatCode_subject, casFeatCode_typeID, casFeatCode_uncertainty

Constructor Summary

Constructors

Constructor and Description
LabMention_Type(JCas jcas, Type casType) initialize variables to correspond with Cas Type and Features

Method Summary

Methods

Modifier and Type	Method and Description
int	getAbnormalInterpretation(int addr)
int	getDeltaFlag(int addr)
protected FSGenerator	getFSGenerator()
int	getLabValue(int addr)
int	getOrdinalInterpretation(int addr)
int	getReferenceRangeNarrative(int addr)
void	setAbnormalInterpretation(int addr, int v)
void	setDeltaFlag(int addr, int v)
void	setLabValue(int addr, int v)
void	setOrdinalInterpretation(int addr, int v)
void	setReferenceRangeNarrative(int addr, int v)

Methods inherited from class org.apache.ctakes.typesystem.type.textsem.EventMention_Type

getEvent, setEvent

Methods inherited from class org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type

getConditional, getConfidence, getDiscoveryTechnique, getGeneric, getHistoryOf, getId, getOntologyConceptArr, getOntologyConceptArr, getOriginalText, getOriginalText, getPolarity, getSegmentID, getSentenceID, getSubject, getTypeID, getUncertainty, setConditional, setConfidence, setDiscoveryTechnique, setGeneric, setHistoryOf, setId, setOntologyConceptArr, setOntologyConceptArr, setOriginalText, setOriginalText, setPolarity, setSegmentID, setSentenceID, setSubject, setTypeID, setUncertainty

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

fsGenerator

private final FSGenerator fsGenerator

typeIndexID

public static final int typeIndexID

featOkTst

public static final boolean featOkTst

casFeat_abnormalInterpretation

final Feature casFeat_abnormalInterpretation

casFeatCode_abnormalInterpretation

final int casFeatCode_abnormalInterpretation

casFeat_deltaFlag

final Feature casFeat_deltaFlag

casFeatCode_deltaFlag

final int casFeatCode_deltaFlag

casFeat_labValue

final Feature casFeat_labValue

casFeatCode_labValue

final int casFeatCode_labValue

casFeat_ordinalInterpretation

final Feature casFeat_ordinalInterpretation

casFeatCode_ordinalInterpretation

final int casFeatCode_ordinalInterpretation

casFeat_referenceRangeNarrative

final Feature casFeat_referenceRangeNarrative

casFeatCode_referenceRangeNarrative

final int casFeatCode_referenceRangeNarrative

Constructor Detail

LabMention_Type

public LabMention_Type(JCas jcas,
               Type casType)

initialize variables to correspond with Cas Type and Features

Parameters:

jcas - JCas

casType - Type

Method Detail

getFSGenerator

protected FSGenerator getFSGenerator()

Overrides:

getFSGenerator in class EventMention_Type

Returns:

the generator for this type

getAbnormalInterpretation

public int getAbnormalInterpretation(int addr)

Parameters:

addr - low level Feature Structure reference

Returns:

the feature value

setAbnormalInterpretation

public void setAbnormalInterpretation(int addr,
                             int v)

Parameters:

addr - low level Feature Structure reference

v - value to set

getDeltaFlag

public int getDeltaFlag(int addr)

Parameters:

addr - low level Feature Structure reference

Returns:

the feature value

setDeltaFlag

public void setDeltaFlag(int addr,
                int v)

Parameters:

addr - low level Feature Structure reference

v - value to set

getLabValue

public int getLabValue(int addr)

Parameters:

addr - low level Feature Structure reference

Returns:

the feature value

setLabValue

public void setLabValue(int addr,
               int v)

Parameters:

addr - low level Feature Structure reference

v - value to set

getOrdinalInterpretation

public int getOrdinalInterpretation(int addr)

Parameters:

addr - low level Feature Structure reference

Returns:

the feature value

setOrdinalInterpretation

public void setOrdinalInterpretation(int addr,
                            int v)

Parameters:

addr - low level Feature Structure reference

v - value to set

getReferenceRangeNarrative

public int getReferenceRangeNarrative(int addr)

Parameters:

addr - low level Feature Structure reference

Returns:

the feature value

setReferenceRangeNarrative

public void setReferenceRangeNarrative(int addr,
                              int v)

Parameters:

addr - low level Feature Structure reference

v - value to set