org.apache.ctakes.template.filler.ae

Class TemplateFillerAnnotator

java.lang.Object

JCasAnnotator_ImplBase

org.apache.ctakes.template.filler.ae.TemplateFillerAnnotator

public class TemplateFillerAnnotator
extends JCasAnnotator_ImplBase

Field Summary

Fields

Modifier and Type	Field and Description
private Logger	logger
private UimaContext	uimaContext

Constructor Summary

Constructors

Constructor and Description
TemplateFillerAnnotator()

Method Summary

Methods

Modifier and Type	Method and Description
private	getAllAnnotations(JCas jcas, int type)
void	initialize(UimaContext aContext)
void	process(JCas jcas)
private void	setAttributesFromOriginal(IdentifiedAnnotation mention, IdentifiedAnnotation original) Copy values from original to mention and add mention to the indexes.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

private Logger logger

uimaContext

private UimaContext uimaContext

Constructor Detail

TemplateFillerAnnotator

public TemplateFillerAnnotator()

Method Detail

initialize

public void initialize(UimaContext aContext)
                throws ResourceInitializationException

Throws:

ResourceInitializationException

setAttributesFromOriginal

private void setAttributesFromOriginal(IdentifiedAnnotation mention,
                             IdentifiedAnnotation original)
                                throws CASException

Copy values from original to mention and add mention to the indexes. If original is a MedicationEventMention (which used to be created by ctakes-drug-ner), create a MedicationMention from the MedicationEventMention, setting the MedicationMention specific attributes like dosage from the MedicationEventMention attributes.

Parameters:

mention - The annotation to copy values to

original - The annotation to copy values from

Throws:

CASException

process

public void process(JCas jcas)
             throws AnalysisEngineProcessException

Throws:

AnalysisEngineProcessException

getAllAnnotations

private  getAllAnnotations(JCas jcas,
                      int type)