org.apache.ctakes.smokingstatus.patientLevel

Class PatientLevelSmokingStatus

java.lang.Object

org.apache.ctakes.smokingstatus.patientLevel.PatientLevelSmokingStatus

public class PatientLevelSmokingStatus
extends java.lang.Object

Patient-level smoking status classification used for the AMIA 2009 paper From PatientLevelSmokingStatus_Jan09.java revised frequency based except for assigning past smoker if exists only past and non-smoker

Field Summary

Fields

Modifier and Type	Field and Description
private static java.lang.String	delimiter
private static java.util.HashMap<java.lang.String,java.lang.String>	finalAssignment
private static java.lang.String	inputFile
private static java.lang.String	outputFile
private static java.util.HashMap<java.lang.String,java.util.Vector<java.lang.Integer>>	patientsStatuses

Constructor Summary

Constructors

Constructor and Description
PatientLevelSmokingStatus()

Method Summary

Methods

Modifier and Type	Method and Description
static void	assignPatientLevelSmokingStatus() performs the patient-level smoking status classification based on document-level classification each patient is assigned only one final smoking status RULE: If exists only U assign U Else if exist N and there is no PCS assign N Else if exist S and there is no PC assign S Else if exist P or C (can be both) If exists either P or C assign P or C respectively Else if exist both P and C If(C freq >= P freq) assign C Else assign P
static void	collectCounts(java.lang.String delim)
static void	main(java.lang.String[] args)
static void	printToFile()
void	setInputFile(java.lang.String fileName)
void	setOutputFile(java.lang.String fileName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputFile

private static java.lang.String inputFile

outputFile

private static java.lang.String outputFile

patientsStatuses

private static java.util.HashMap<java.lang.String,java.util.Vector<java.lang.Integer>> patientsStatuses

finalAssignment

private static java.util.HashMap<java.lang.String,java.lang.String> finalAssignment

delimiter

private static java.lang.String delimiter

Constructor Detail

PatientLevelSmokingStatus

public PatientLevelSmokingStatus()

Method Detail

main

public static void main(java.lang.String[] args)

setInputFile

public void setInputFile(java.lang.String fileName)

setOutputFile

public void setOutputFile(java.lang.String fileName)

collectCounts

public static void collectCounts(java.lang.String delim)

assignPatientLevelSmokingStatus

public static void assignPatientLevelSmokingStatus()

performs the patient-level smoking status classification based on document-level classification each patient is assigned only one final smoking status RULE: If exists only U assign U Else if exist N and there is no PCS assign N Else if exist S and there is no PC assign S Else if exist P or C (can be both) If exists either P or C assign P or C respectively Else if exist both P and C If(C freq >= P freq) assign C Else assign P

printToFile

public static void printToFile()