org.apache.ctakes.drugner.cc

Class ConsumeNamedEntityRecordModel

java.lang.Object

CasConsumer_ImplBase

org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel

public class ConsumeNamedEntityRecordModel
extends CasConsumer_ImplBase

UIMA annotator that preps the CAS for extraction into DB2.

Field Summary

Fields

Modifier and Type	Field and Description
protected java.util.ArrayList	al
private java.lang.String	clinicNumber
private java.lang.String	docLinkId
private java.lang.String	docRevision
private java.lang.String	drugHeaders
private java.lang.String	fileForIO
private boolean	gotDup
private boolean	gotValidDate
private int	iv_annotVer
private java.lang.String	iv_annotVerPropKey
private java.lang.String	iv_fileForInput
private java.util.Set<java.lang.String>	iv_medicalSections
(package private) java.io.File	iv_outputDirectory
private java.lang.Boolean	iv_useCurrentMedsSectionOnly
(package private) int	keepTrackOfDupBegin
(package private) int	keepTrackOfDupEnd
(package private) int	milliDay
(package private) int	milliWeek
static java.lang.String	PARAM_OUTPUTDIR
private java.lang.String	pathToDrugInclusions
private java.lang.String	vClinicalNumber
private java.lang.String	vNoteDate
private java.lang.String	vRevDate

Constructor Summary

Constructors

Constructor and Description
ConsumeNamedEntityRecordModel()

Method Summary

Methods

Modifier and Type	Method and Description
private void	assignNamedEntityFeats(CAS cas) Assigns typeID and segmentID values to Drug NamedEntities
void	initialize()
static java.util.List	load(java.lang.String filename) Loads text from a file.
protected int	parseIntValue(java.lang.Object strength)
protected java.lang.String	parseStengthValue(java.lang.Object strength)
void	processCas(CAS cas)
void	store(java.lang.String filename, java.lang.String lineToStore) Loads text from a file.
private void	storeAnnotationVersion(JCas jcas) Stores annotation version as a property JCas object.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iv_annotVerPropKey

private java.lang.String iv_annotVerPropKey

al

protected java.util.ArrayList al

iv_outputDirectory

java.io.File iv_outputDirectory

keepTrackOfDupBegin

int keepTrackOfDupBegin

keepTrackOfDupEnd

int keepTrackOfDupEnd

milliWeek

int milliWeek

milliDay

int milliDay

iv_annotVer

private int iv_annotVer

gotValidDate

private boolean gotValidDate

gotDup

private boolean gotDup

vRevDate

private java.lang.String vRevDate

vNoteDate

private java.lang.String vNoteDate

vClinicalNumber

private java.lang.String vClinicalNumber

clinicNumber

private java.lang.String clinicNumber

docLinkId

private java.lang.String docLinkId

docRevision

private java.lang.String docRevision

iv_fileForInput

private java.lang.String iv_fileForInput

pathToDrugInclusions

private java.lang.String pathToDrugInclusions

iv_medicalSections

private java.util.Set<java.lang.String> iv_medicalSections

drugHeaders

private java.lang.String drugHeaders

iv_useCurrentMedsSectionOnly

private java.lang.Boolean iv_useCurrentMedsSectionOnly

PARAM_OUTPUTDIR

public static final java.lang.String PARAM_OUTPUTDIR

See Also:

Constant Field Values

fileForIO

private java.lang.String fileForIO

Constructor Detail

ConsumeNamedEntityRecordModel

public ConsumeNamedEntityRecordModel()

Method Detail

initialize

public void initialize()
                throws ResourceInitializationException

Throws:

ResourceInitializationException

storeAnnotationVersion

private void storeAnnotationVersion(JCas jcas)

Stores annotation version as a property JCas object.

Parameters:

jcas -

processCas

public void processCas(CAS cas)
                throws ResourceProcessException

Throws:

ResourceProcessException

assignNamedEntityFeats

private void assignNamedEntityFeats(CAS cas)
                             throws ResourceProcessException

Assigns typeID and segmentID values to Drug NamedEntities

Throws:

ResourceProcessException

load

public static java.util.List load(java.lang.String filename)
                           throws java.io.FileNotFoundException,
                                  java.io.IOException

Loads text from a file. Specialized to load array idAndDate and return it too

Parameters:

filename -

Returns:

Throws:

java.io.FileNotFoundException

java.io.IOException

store

public void store(java.lang.String filename,
         java.lang.String lineToStore)
           throws java.io.FileNotFoundException,
                  java.io.IOException

Loads text from a file. Specialized to load array idAndDate and return it too

Parameters:

filename -

Throws:

java.io.FileNotFoundException

java.io.IOException

parseStengthValue

protected java.lang.String parseStengthValue(java.lang.Object strength)

parseIntValue

protected int parseIntValue(java.lang.Object strength)