org.apache.ctakes.dictionary.lookup2.consumer

Interface TermConsumer

All Known Implementing Classes:

AbstractTermConsumer, DefaultTermConsumer, PrecisionTermConsumer, SemanticCleanupTermConsumer

public interface TermConsumer

Stores terms in the cas Author: SPF Affiliation: CHIP-NLP Date: 12/5/13

Method Summary

Methods

Modifier and Type	Method and Description
void	consumeHits(JCas jcas, RareWordDictionary dictionary, CollectionMap<TextSpan,java.lang.Long,? extends java.util.Collection<java.lang.Long>> textSpanCuis, CollectionMap<java.lang.Long,Concept,? extends java.util.Collection<Concept>> cuiConcepts)
void	consumeTypeIdHits(JCas jcas, java.lang.String defaultScheme, int cTakesSemantic, CollectionMap<TextSpan,java.lang.Long,? extends java.util.Collection<java.lang.Long>> textSpanCuis, CollectionMap<java.lang.Long,Concept,? extends java.util.Collection<Concept>> cuiConcepts)

Method Detail

consumeHits

void consumeHits(JCas jcas,
               RareWordDictionary dictionary,
               CollectionMap<TextSpan,java.lang.Long,? extends java.util.Collection<java.lang.Long>> textSpanCuis,
               CollectionMap<java.lang.Long,Concept,? extends java.util.Collection<Concept>> cuiConcepts)
                 throws AnalysisEngineProcessException

Parameters:

jcas - -

dictionary - the dictionary: Anatomical Site, Disease/Disorder, Drug, combination, etc.

textSpanCuis - collection of discovered terms

cuiConcepts - map of cuis to concepts

Throws:

AnalysisEngineProcessException

consumeTypeIdHits

void consumeTypeIdHits(JCas jcas,
                     java.lang.String defaultScheme,
                     int cTakesSemantic,
                     CollectionMap<TextSpan,java.lang.Long,? extends java.util.Collection<java.lang.Long>> textSpanCuis,
                     CollectionMap<java.lang.Long,Concept,? extends java.util.Collection<Concept>> cuiConcepts)
                       throws AnalysisEngineProcessException

Parameters:

jcas - -

defaultScheme - - name of the coding scheme to use if no secondary (snomed, rxnorm) schemes exist

cTakesSemantic - cTakes IdentifiedAnnotation only accepts an integer as a cTakesSemantic

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

AnalysisEngineProcessException