org.apache.ctakes.clinicalpipeline.ae

Class ExtractionPrepAnnotator

java.lang.Object

JCasAnnotator_ImplBase

org.apache.ctakes.clinicalpipeline.ae.ExtractionPrepAnnotator

public class ExtractionPrepAnnotator
extends JCasAnnotator_ImplBase

UIMA annotator that prepares the CAS for output - performs some (final) updates to the CAS

Field Summary

Fields

Modifier and Type	Field and Description
private int	iv_annotVer
private java.lang.String	iv_annotVerPropKey

Constructor Summary

Constructors

Constructor and Description
ExtractionPrepAnnotator()

Method Summary

Methods

Modifier and Type	Method and Description
private void	assignNamedEntityFeats(JCas jcas) Assigns OID and segmentID values to NamedEntities
private void	generateTokenNormForms(JCas jcas) Generates normalized form for each token annotation.
private void	generateUidValues(JCas jcas) Generates UID values for all IdentifiedAnnotation objects.
void	initialize(UimaContext aCtx) Method invoked by UIMA framework to initialize this annotator
void	process(JCas jcas) Method invoked by UIMA framework to process a document
private void	storeAnnotationVersion(JCas jcas) Stores annotation version as a property JCas object.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iv_annotVerPropKey

private java.lang.String iv_annotVerPropKey

iv_annotVer

private int iv_annotVer

Constructor Detail

ExtractionPrepAnnotator

public ExtractionPrepAnnotator()

Method Detail

initialize

public void initialize(UimaContext aCtx)
                throws ResourceInitializationException

Method invoked by UIMA framework to initialize this annotator

Throws:

ResourceInitializationException

process

public void process(JCas jcas)
             throws AnalysisEngineProcessException

Method invoked by UIMA framework to process a document

Throws:

AnalysisEngineProcessException

storeAnnotationVersion

private void storeAnnotationVersion(JCas jcas)

Stores annotation version as a property JCas object.

Parameters:

jcas -

generateUidValues

private void generateUidValues(JCas jcas)

Generates UID values for all IdentifiedAnnotation objects. This is just a numeric identifier, assigned sequentially.

generateTokenNormForms

private void generateTokenNormForms(JCas jcas)

Generates normalized form for each token annotation. Considers whether it is a WordToken with a canonical form

assignNamedEntityFeats

private void assignNamedEntityFeats(JCas jcas)

Assigns OID and segmentID values to NamedEntities