org.apache.ctakes.assertion.medfacts

Class Converti2b2AnnotationsToCTAKES

java.lang.Object

org.apache.ctakes.assertion.medfacts.Converti2b2AnnotationsToCTAKES

public class Converti2b2AnnotationsToCTAKES
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
private static Logger	logger

Constructor Summary

Constructors

Constructor and Description
Converti2b2AnnotationsToCTAKES()

Method Summary

Methods

Modifier and Type	Method and Description
private static void	adjustAssertionAttributesByI2B2Convertion(IdentifiedAnnotation entityOrEventMention, org.mitre.medfacts.i2b2.annotation.AssertionAnnotation i2b2Assertion)
private static CAS	getTypeSystemFromDescriptor(java.lang.String descriptor)
static void	main(java.lang.String[] args)
private static void	writeXmi(CAS aCas, java.io.File name) Serialize a CAS to a file in XMI format

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

private static Logger logger

Constructor Detail

Converti2b2AnnotationsToCTAKES

public Converti2b2AnnotationsToCTAKES()

Method Detail

getTypeSystemFromDescriptor

private static CAS getTypeSystemFromDescriptor(java.lang.String descriptor)
                                        throws InvalidXMLException,
                                               java.io.IOException,
                                               ResourceInitializationException,
                                               CASException

Throws:

InvalidXMLException

java.io.IOException

ResourceInitializationException

CASException

writeXmi

private static void writeXmi(CAS aCas,
            java.io.File name)
                      throws java.io.IOException,
                             org.xml.sax.SAXException

Serialize a CAS to a file in XMI format

Parameters:

aCas - CAS to serialize

name - output file

Throws:

org.xml.sax.SAXException

java.lang.Exception

ResourceProcessException

java.io.IOException

main

public static void main(java.lang.String[] args)
                 throws java.io.IOException,
                        InvalidXMLException,
                        CASException,
                        org.xml.sax.SAXException,
                        AnalysisEngineProcessException

Throws:

java.io.IOException

InvalidXMLException

CASException

org.xml.sax.SAXException

AnalysisEngineProcessException

adjustAssertionAttributesByI2B2Convertion

private static void adjustAssertionAttributesByI2B2Convertion(IdentifiedAnnotation entityOrEventMention,
                                             org.mitre.medfacts.i2b2.annotation.AssertionAnnotation i2b2Assertion)