org.apache.ctakes.assertion.cr

Class XMLReader

java.lang.Object

org.apache.ctakes.assertion.cr.XMLReader

public class XMLReader
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
(package private) static java.lang.String[]	attrHeadings
private static boolean	VERBOSE

Constructor Summary

Constructors

Constructor and Description
XMLReader()

Method Summary

Methods

Modifier and Type	Method and Description
private static void	addRelation(java.util.ArrayList<RelationInfo> relations, java.util.List<?> hasSlotMentions, java.util.HashMap<java.lang.String,ArgumentInfo> hashComplexSlotMentions, java.lang.String relationType)
static java.util.HashMap<java.lang.String,ArgumentInfo>	getAttributes(Document document) Attributes of each named entity indexed on mention ids.
static java.util.HashMap<java.lang.String,ArgumentInfo>	getAttributes(Document document, java.lang.String[] headings) Attributes of each named entity indexed on mention ids.
static java.util.HashMap<java.lang.String,java.util.List<java.lang.String>>	getEntityAttributes(Document document) Attribute mention IDs of each named entity, indexed on mention ids Filter based on entity types, so non-NE get left out.
static java.util.HashMap<java.lang.String,java.util.ArrayList<Span>>	getEntityMentions(Document document) Get spans of named entity annotations indexed on knowtator mention id
static java.util.HashMap<java.lang.String,java.lang.String>	getEntityTypes(Document document) Type of each named entity indexed on mention ids
static java.util.ArrayList<RelationInfo>	getRelations(Document document)
private static java.lang.String	normalizeName(java.lang.String role) Convert Argument_CU and Related_to_CU to Argument and Related_to.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

attrHeadings

static java.lang.String[] attrHeadings

VERBOSE

private static boolean VERBOSE

Constructor Detail

XMLReader

public XMLReader()

Method Detail

getEntityMentions

public static java.util.HashMap<java.lang.String,java.util.ArrayList<Span>> getEntityMentions(Document document)

Get spans of named entity annotations indexed on knowtator mention id

getEntityTypes

public static java.util.HashMap<java.lang.String,java.lang.String> getEntityTypes(Document document)

Type of each named entity indexed on mention ids

getEntityAttributes

public static java.util.HashMap<java.lang.String,java.util.List<java.lang.String>> getEntityAttributes(Document document)

Attribute mention IDs of each named entity, indexed on mention ids Filter based on entity types, so non-NE get left out.

getAttributes

public static java.util.HashMap<java.lang.String,ArgumentInfo> getAttributes(Document document)

Attributes of each named entity indexed on mention ids. For now, manually handles different types of Slots

getAttributes

public static java.util.HashMap<java.lang.String,ArgumentInfo> getAttributes(Document document,
                                                             java.lang.String[] headings)

Attributes of each named entity indexed on mention ids. For now, manually handles different types of Slots

getRelations

public static java.util.ArrayList<RelationInfo> getRelations(Document document)

addRelation

private static void addRelation(java.util.ArrayList<RelationInfo> relations,
               java.util.List<?> hasSlotMentions,
               java.util.HashMap<java.lang.String,ArgumentInfo> hashComplexSlotMentions,
               java.lang.String relationType)

normalizeName

private static java.lang.String normalizeName(java.lang.String role)

Convert Argument_CU and Related_to_CU to Argument and Related_to. This will not be necessary in the future when the data will be post-processed to remove _CU suffixes. Currently mipacq data does not have the suffixes and sharp data does.